Cpal004684.1
Basic Information
- Insect
- Carterocephalus palaemon
- Gene Symbol
- -
- Assembly
- GCA_944567795.1
- Location
- CALYMS010000049.1:1396559-1405604[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 3.9e-05 0.0023 18.4 1.4 1 23 138 160 138 160 0.98 2 22 0.0018 0.1 13.2 0.6 1 21 165 185 165 186 0.93 3 22 0.00025 0.014 15.9 4.3 1 23 205 227 205 227 0.98 4 22 6.4e-05 0.0037 17.7 1.5 1 23 237 259 237 259 0.98 5 22 7.5e-07 4.4e-05 23.8 3.1 1 23 265 287 265 287 0.99 6 22 1.9e-05 0.0011 19.4 6.7 1 23 293 315 293 315 0.98 7 22 2.5e-07 1.5e-05 25.3 0.8 1 23 321 343 321 343 0.95 8 22 8.2e-05 0.0048 17.4 2.7 1 23 349 371 349 371 0.97 9 22 0.00015 0.0087 16.6 0.2 1 23 377 399 377 399 0.97 10 22 4.2 2.4e+02 2.6 0.7 1 22 405 426 405 430 0.85 11 22 0.00015 0.0087 16.6 0.2 1 23 440 462 440 462 0.97 12 22 0.00015 0.0087 16.6 0.2 1 23 503 525 503 525 0.97 13 22 4.2 2.4e+02 2.6 0.7 1 22 531 552 531 556 0.85 14 22 0.00015 0.0087 16.6 0.2 1 23 566 588 566 588 0.97 15 22 0.00015 0.0087 16.6 0.2 1 23 629 651 629 651 0.97 16 22 0.00015 0.0087 16.6 0.2 1 23 692 714 692 714 0.97 17 22 0.00015 0.0087 16.6 0.2 1 23 735 757 735 757 0.97 18 22 0.00015 0.0087 16.6 0.2 1 23 778 800 778 800 0.97 19 22 0.00015 0.0087 16.6 0.2 1 23 841 863 841 863 0.97 20 22 0.00031 0.018 15.6 4.7 1 23 869 891 869 891 0.98 21 22 1.2e-05 0.00068 20.1 0.9 1 23 897 919 897 919 0.99 22 22 0.00016 0.0091 16.5 0.5 1 20 925 944 925 947 0.94
Sequence Information
- Coding Sequence
- ATGCTGGAAGTATCGATGACCTGTCGCAGCTGTATGACGAATGATGTAGATTTAGTGGATTTGTTCATCCCACTGAACCTTGATAATTGCCCTATACAGTTAGACGATTTGTTCATGTCGACGGTTTCAATTCAGATAAGCCGAGAAGATGGACTGCCCCACAAGGTATGCTACAAATGTGCACAGTTCTTACAGTCTGTGCACATGTTTCGCAAGCAAGCTCTATCAGCTGAGCAAGAGCTAAAAAGGCTGTTATTTTCTAAATCTGATGTTAAAGAAGAAATTGAACCAAAATCTGAAAATATTTGTGACTTCTTTGATGTATATGATGATTACGTACATGATAATCAAATTGTTCCTAAAGACGAGATTCAAGAGACTGATTTAAAGGAAGAAGTAAGAGATGAGGgatatgtatgtaatgtttgtCAGAGATCCTACACTAATGAAGATAAATTTTTAAAGCATATGTCTTCTCACATCAAAGCTAAGTATTTTTGTAGTGCATGCAGTAAGCCATTCCAAAAGCAATCTTCTCTAAATAGACATATTGAGAAGAAATGCAAAGGTACACTAGTGTCAATTAAAACAGAGAAAGGTGAAGATGGAGTATTTCGATGTGAAATATGTAAGTTGAGCTTTACAAAGCATAGATCCCTCATTTCACATTTAAAGAAACATAAAGGAAAGCGTAAAGCAAGAGTGAACTACGAGTGTGACTATTGTAGCAAGGAGTTCACACTGAAAATGGTTCTGAAAAGGCATATGAAACTGCATTTGGACAATGAACAATACCAGTGCAATATATGCTCTAAAAAGTATTCCAGACAAGACCAGTTGAATAACCATACGAGAAAACACACTGGAGTTAAGCCGCACACATGCCCTCACTGTAATAAAGGCTTCTCGCAACTGTGCAGCCTGAAGGACCACATCCGGACCCACACGAAGGAGACCCCGTTCCTGTGCTCGGAGTGCGGCAAGGGCTTCAGCAACAGCTCGAATCTCCGCCAGCATTTGCTGCGCCACTCCGGCCACAAGCCCTTCTCCTGCCATCTATGTCCCAAGTCCTTCTACACCAAGGGTCAGATGAAGAGCCACGAGGCGACGCACACGGGCGCGCGCCGGCACGAGTGCCCCGAGTGCGGCGCGGTGCTCACCACCGGCAGCTCGCTCAAGAAGCACCGCCTCATCCACCTCGGCGTCAAGCCGTACGCCTGCGACACCTGCGGCCTCAGGTATGCTGcactgacagacagacacacacacagacagacagacaagaccCACGAGGCGACGCACACGGGCGCGCACCGGCACGAGTGCCCCGAGTGCGGCGCGGTGCTCACCACCGGCAGCTCGCTCAAGAAGCACCGCCTCATCCACCTCGGCGTCAAGCCGTACGCCTGCGACACCTGCGGCCTCAGGTATGCTGCACTatcagacagacacacagacagacagacagacaagaccCACGAGGCGACGCACACGGGCGCGCGCCGGCACGAGTGCCCCGAGTGCGGCGCGGTGCTCACCACCGGCAGCTCGCTCAAGAAGCACCGCCTCATCCACCTCGGCGTCAAGCCGTACGCCTGCGACACCTGCGGCCTCAGGTATGCTGcactgacagacagacacacacacagacagacagacaagaccCACGAGGCGACGCACACGGGCGCGCACCGGCACGAGTGCCCCGAGTGCGGCGCGGTGCTCACCACCGGCAGCTCGCTCAAGAAGCACCGCCTCATCCACCTCGGCGTCAAGCCGTACGCCTGCGACACCTGCGGCCTCAGGTATGCTGCACTatcagacagacacacagacagacagacagacaagaccCACGAGGCGACGCACACGGGCGCGCGCCGGCACGAGTGCCCCGAGTGCGGCGCGGTGCTCACCACCGGCAGCTCGCTCAAGAAGCACCGGCTCATCCACCTCGGCGTCAAGCCGTACGCCTGCGACACCTGCGGCCTCAGGTATGCTGCAttatcagacagacagacagacagacagacagacaagagcCACGAGGCGACGCACACGGGCGCGCGCCGGCACGAGTGCCCCGAGTGCGGCGCGGTGCTCACCACCGGCAGCTCGCTCAAGAAGCACCGCCTCATCCACCTCGGCGTCAAGCCacagacagacaagagcCACGAGGCGACGCACACGGGCGCACGCCGGCACGAGTGCCCCGAGTGCGGCGCGGTGCTCACCACCGGCAGCTCGCTCAAGAAGCACCGCCTCATCCACCTCGGCGTCAAGCCacagacagacaagagcCACGAGGCGACGCACACGGGCGCACGCCGGCACGAGTGCCCCGAGTGCGGCGCGGTGCTCACCACCGGCAGCTCGCTCAAGAAGCACCGCCTCATCCACCTCGGCGTCAAGCCGTACGCCTGCGACACCTGCGGCCTCAGGTATGCTGCACTgtcagacagacacacagacagacagacagacaagaccCACGAGGCGACGCACACGGGCGCGCGCCGGCACGAGTGCCCCGAGTGCGGCGCGGTGCTCACCACCGGCAGCTCGCTCAAGAAGCACCGCCTCATCCACCTCGGCGTCAAGCCGTACGCCTGCGACACCTGCGGCGTCAGATTCACGTGCAAGGACCACCTGAAGCGTCACCAGCGGATCCACacgggcgagaagccgtacCGCTGCGCGCACTGCGAGCGCGCCTTCGCCCAGAGCAACGACCTGGTCAAGCACGTGCGCTCGCACGTCGGCCAGAACATCTACCAGTGTACAATATGCGATATGAAGTTCCGTCTGCGCGGCGAACTAAAACGGCACTATCCAATCCACTACGTCAACGACGCTACCGTCGCGCCCCTAGACGTGGCGCAGTCACTCCTACTGGGAGGGGAGAGGAGGGAAAGTTTGGATCACCGGGGGGACATAGTAGGTCAGGGGGAAGAGGGGGAAAACACAAACGATCACACGATCAATCACACAGAGAACCACATCACGATCACGTTTAACAGCAATGTTCTGGACAAGGAGGGCATTGCTGGTGACATCACTATCAACATATCGCCGACGAAGAGTTAG
- Protein Sequence
- MLEVSMTCRSCMTNDVDLVDLFIPLNLDNCPIQLDDLFMSTVSIQISREDGLPHKVCYKCAQFLQSVHMFRKQALSAEQELKRLLFSKSDVKEEIEPKSENICDFFDVYDDYVHDNQIVPKDEIQETDLKEEVRDEGYVCNVCQRSYTNEDKFLKHMSSHIKAKYFCSACSKPFQKQSSLNRHIEKKCKGTLVSIKTEKGEDGVFRCEICKLSFTKHRSLISHLKKHKGKRKARVNYECDYCSKEFTLKMVLKRHMKLHLDNEQYQCNICSKKYSRQDQLNNHTRKHTGVKPHTCPHCNKGFSQLCSLKDHIRTHTKETPFLCSECGKGFSNSSNLRQHLLRHSGHKPFSCHLCPKSFYTKGQMKSHEATHTGARRHECPECGAVLTTGSSLKKHRLIHLGVKPYACDTCGLRYAALTDRHTHRQTDKTHEATHTGAHRHECPECGAVLTTGSSLKKHRLIHLGVKPYACDTCGLRYAALSDRHTDRQTDKTHEATHTGARRHECPECGAVLTTGSSLKKHRLIHLGVKPYACDTCGLRYAALTDRHTHRQTDKTHEATHTGAHRHECPECGAVLTTGSSLKKHRLIHLGVKPYACDTCGLRYAALSDRHTDRQTDKTHEATHTGARRHECPECGAVLTTGSSLKKHRLIHLGVKPYACDTCGLRYAALSDRQTDRQTDKSHEATHTGARRHECPECGAVLTTGSSLKKHRLIHLGVKPQTDKSHEATHTGARRHECPECGAVLTTGSSLKKHRLIHLGVKPQTDKSHEATHTGARRHECPECGAVLTTGSSLKKHRLIHLGVKPYACDTCGLRYAALSDRHTDRQTDKTHEATHTGARRHECPECGAVLTTGSSLKKHRLIHLGVKPYACDTCGVRFTCKDHLKRHQRIHTGEKPYRCAHCERAFAQSNDLVKHVRSHVGQNIYQCTICDMKFRLRGELKRHYPIHYVNDATVAPLDVAQSLLLGGERRESLDHRGDIVGQGEEGENTNDHTINHTENHITITFNSNVLDKEGIAGDITINISPTKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -