Cpal014713.1
Basic Information
- Insect
- Carterocephalus palaemon
- Gene Symbol
- -
- Assembly
- GCA_944567795.1
- Location
- CALYMS010000227.1:12849-30408[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 39 0.74 43 5.0 0.8 1 23 218 240 218 240 0.95 2 39 0.74 43 5.0 0.8 1 23 258 280 258 280 0.95 3 39 0.035 2.1 9.1 0.0 2 22 288 308 287 310 0.88 4 39 0.00012 0.007 16.9 0.5 1 23 341 364 341 364 0.98 5 39 0.17 10 6.9 1.8 1 23 368 391 368 391 0.94 6 39 4.7 2.8e+02 2.4 2.9 4 23 425 445 418 445 0.87 7 39 4.7 2.8e+02 2.4 2.9 4 23 479 499 472 499 0.87 8 39 0.041 2.4 8.9 0.1 2 21 516 535 516 540 0.92 9 39 0.026 1.5 9.6 0.1 3 23 594 615 592 615 0.96 10 39 0.00026 0.015 15.8 1.8 3 23 626 646 624 646 0.97 11 39 4.8e-05 0.0028 18.1 0.5 1 23 652 674 652 674 0.99 12 39 0.00077 0.045 14.3 0.3 1 22 680 701 680 704 0.90 13 39 0.00077 0.045 14.3 0.3 1 22 714 735 714 738 0.90 14 39 0.00077 0.045 14.3 0.3 1 22 748 769 748 772 0.90 15 39 0.00077 0.045 14.3 0.3 1 22 782 803 782 806 0.90 16 39 0.00077 0.045 14.3 0.3 1 22 816 837 816 840 0.90 17 39 0.00077 0.045 14.3 0.3 1 22 850 871 850 874 0.90 18 39 0.00077 0.045 14.3 0.3 1 22 884 905 884 908 0.90 19 39 0.008 0.47 11.1 0.3 1 20 918 937 918 942 0.95 20 39 0.00077 0.045 14.3 0.3 1 22 952 973 952 976 0.90 21 39 0.00077 0.045 14.3 0.3 1 22 986 1007 986 1010 0.90 22 39 0.00077 0.045 14.3 0.3 1 22 1020 1041 1020 1044 0.90 23 39 0.00077 0.045 14.3 0.3 1 22 1054 1075 1054 1078 0.90 24 39 0.00077 0.045 14.3 0.3 1 22 1088 1109 1088 1112 0.90 25 39 0.00077 0.045 14.3 0.3 1 22 1122 1143 1122 1146 0.90 26 39 0.00077 0.045 14.3 0.3 1 22 1156 1177 1156 1180 0.90 27 39 0.00077 0.045 14.3 0.3 1 22 1190 1211 1190 1214 0.90 28 39 0.00077 0.045 14.3 0.3 1 22 1224 1245 1224 1248 0.90 29 39 0.00077 0.045 14.3 0.3 1 22 1258 1279 1258 1282 0.90 30 39 0.00077 0.045 14.3 0.3 1 22 1292 1313 1292 1316 0.90 31 39 0.00077 0.045 14.3 0.3 1 22 1326 1347 1326 1350 0.90 32 39 0.00077 0.045 14.3 0.3 1 22 1360 1381 1360 1384 0.90 33 39 0.00077 0.045 14.3 0.3 1 22 1394 1415 1394 1418 0.90 34 39 0.00077 0.045 14.3 0.3 1 22 1428 1449 1428 1452 0.90 35 39 0.00077 0.045 14.3 0.3 1 22 1462 1483 1462 1486 0.90 36 39 0.00077 0.045 14.3 0.3 1 22 1496 1517 1496 1520 0.90 37 39 0.00077 0.045 14.3 0.3 1 22 1530 1551 1530 1554 0.90 38 39 6.3e-05 0.0037 17.8 0.2 1 23 1564 1586 1564 1586 0.96 39 39 0.00012 0.0069 16.9 0.8 1 23 1592 1615 1592 1615 0.98
Sequence Information
- Coding Sequence
- ATGGATATCAGCCAAATATGTAAAATATGCTTATCAATGAATGTACAAATGTTTAATATAACCAACACATCATTGCAAGAAATGTACGAAAAACTAACGAGTTTGCCGTTCAGTAAATTAACCGGGATCGCAGAGACTGTTTGCTACCAGTGCGCAGCCAGGCTGAGGAGTTGCAGGAGGCTGCAGCAGACTGCCACCAGGGCTGCTGAAGTGCTCACACTACTGCTGAGTGGGAATTCCATGGTAGAGGAGTCCTTAAGGCATTTCCAGGGGCACATCCCCAGTGGCAAGTTGATCGTGGATGTGTTGGAGAGCATTGACATCGGTGGCAACACCGACGATGTCAAGAGTGAACCGGAGGATATCAAGATTGAACCGGCTAGAGAAGAAAAGGGAATTGAACACGTACAAAACTCGGACGGAGAGTGCAATGAACCAGCGGACACCGCGCCACCTTCGGACAGTGATGATGACCTGCCTCTCAAGAGCATCAGCACTAAGGGCCGTGGCGGGGGAGCGAGACAGACTGCGCGCAAGCGGAGAAAGAAGACAGAAGCCGTCCTCGACGCCGTGGAGGTGACGCTGAGCCGGGAGCAGCAGCGCGAGGAgctggccgcgcgcgcgcagtcCGCGAACTACCTGCACTCGCCGTACAGGTGCCGGCTGTGCTTCAGGGGGTTCGTGGACCCGGGGGCGCACCGCAACCACGCGCTCCGGCACAGCGAGGAgctggccgcgcgcgcgcagtcCGCGAACTACCTGCACTCGCCGTACAGGTGCCGGCTGTGCTTCAGGGGGTTCGTGGACCCGGGGGCGCACCGCAACCACGCGCTCAGGCACAGCGAGgcTCACGGCGCCCTGGAGTGCCCCGTGTGCCGGCTGCGCTACCCCAGCGCGcggcagctgcgcgcgcacgcggccgccgcgcacgAGCGCCGCTACGTGTGCAACCGCTGCCCGCACCGCGCGCACACCAAGAACCAGGCGTTGGAGCACGAGAAATGGCACAACGGCCATACTTATCCCTGCAGGCTGTGCGGGGAGACGTTCAGCAAGCCAACGACGTACCTGACGCACCTGCGCAAGGCGCACGCGAGCGAGCACGTGTGCGCGCGCTGCGGCCACAGCTTCGTGGGGCGGCACGGGCTGCTCATGCACGCGAGCAAGGCGCACCGCGCGCCCGACCCGCTTCGTGGGGCGGCACGGGCTGCTCATGCACGCGAGCAAGGCGCACCGCGCGCCCGACCCGGTGAGTGCACGCACGCGAGCGAGCACGTGTGCGGCCACAGCTTCGTGGGGCGGCACGGGCTGCTCATGCACGCGAGCAAGGCGCACCGCGCGCCCGACCCGCTTCGTGGGGCGGCACGGGCTGCTCATGCACGCGAGCAAGGCGCACCGCGCGCCCGACCCGGTGAGTGCACGCACGCGAGCGAGCACGTGTGCGGCCACAGCTTCGTGGGGCGGCACGGGCTGCTCATGCACGCGAGCAAGGCGCACCGCGCGCCCGACCCGGAACCGAACCCGGAGGAGAGTCCGGACACGAGGAGCTGCAAGGACTGCGAGATCCTGTTCGCGTCGCGCGAGGCGTGGACGCGGCACATGCTCGTGTCGGTCAAGCACGAGCCGTGGACGGAGGACGGCGCATGCGTGGTGTGCGGCGAGGCGGTGCCCGCGGAGCTGCGGCGCGAGCACGAGCGCGCGCACGTGCGCGCCctccgccccgcgcccgcgcccgcctccgcgcccgcgcccgcctccgcgccgctcgcgctgctAGCTTGCGACCAGTGCGAGTCGCGCTTCGCGTCGGCGGcgcggctgcgcgcgcacgtGCGGCGCGTGCACCTCGGCCTCAAGTACGACAAGAACGTCATCTGCGAGCTGTGCGGCAAGAAGTGCACcTCGGAGGCGACCCTGCGCTACCACCAGCGCCGGCACACGGGCCTGCGCCCCTACCGCTGCGCCACGTGCGACGCCCGCTTCTCGGACTCCAACCAGCTGCGCATCCACGCGCGCCGCCACTCGGGCGAGCGGCCGTACGCGTGCGCCGCGTGCCCCAAGCGGTTCACGCAGAGGCCGGCGCTCACGCGACACTACCGGCTGCGCATCCACGCGCGCCGCCACTCGGGCGAGCGGCCGTACGCGTGCGCCGCGTGCCCCAAGCGGTTCACGCAGAGGCCGGCGCTCACGCGACACTACCGGCTGCGCATCCACGCGCGCCGCCACTCGGGCGAGCGGCCGTACGCGTGCGCCGCGTGCCCCAAGCGGTTCACGCAGAGGCCGGCGCTCACGCGACACTACCGGCTGCGCATCCACGCGCGCCGCCACTCGGGCGAGCGGCCGTACGCGTGCGCCGCGTGCCCCAAGCGGTTCACGCAGAGGCCGGCGCTCACGCGACACTACCGGCTGCGCATCCACGCGCGCCGCCACTCGGGCGAGCGGCCGTACGCGTGCGCCGCGTGCCCCAAGCGGTTCACGCAGAGGCCGGCGCTCACGCGACACTACCGGCTGCGCATCCACGCGCGCCGCCACTCGGGCGAGCGGCCGTACGCGTGCGCCGCGTGCCCCAAGCGGTTCACGCAGAGGCCGGCGCTCACGCGACACTACCGGCTGCGCATCCACGCGCGCCGCCACTCGGGCGAGCGGCCGTACGCGTGCGCCGCGTGCCCCAAGCGGTTCACGCAGAGGCCGGCGCTCACGCGGCACTACCGGCTGCGCATCCACGCGCGCCGCCACTCGGGCGAGCGGCCGTACGCGTGCGCCGCGTGCCCCAAGCGGTTCACGCAGAGGCCGGCGCTCACGCGACACTACTGGCTGCGCATCCACGCGCGCCGCCACTCGGGCGAGCGGCCGTACGCGTGCGCCGCGTGCCCCAAGCGGTTCACGCAGAGGCCGGCGCTCACGCGACACTACCGGCTGCGCATCCACGCGCGCCGCCACTCGGGCGAGCGGCCGTACGCGTGCGCCGCGTGCCCCAAGCGGTTCACGCAGAGGCCGGCGCTCACGCGACACTACCGGCTGCGCATCCACGCGCGCCGCCACTCGGGCGAGCGGCCGTACGCGTGCGCCGCGTGCCCCAAGCGGTTCACGCAGAGGCCGGCGCTCACGCGACACTACCGGCTGCGCATCCACGCGCGCCGCCACTCGGGCGAGCGGCCGTACGCGTGCGCCGCGTGCCCCAAGCGGTTCACGCAGAGGCCGGCGCTCACGCGGCACTACCGGCTGCGCATCCACGCGCGCCGCCACTCGGGCGAGCGGCCGTACGCGTGCGCCGCGTGCCCCAAGCGGTTCACGCAGAGGCCGGCGCTCACGCGACACTACCGGCTGCGCATCCACGCGCGCCGCCACTCGGGCGAGCGGCCGTACGCGTGCGCCGCGTGCCCCAAGCGGTTCACGCAGAGGCCGGCGCTCACGCGACACTACCGGCTGCGCATCCACGCGCGCCGCCACTCGGGCGAGCGGCCGTACGCGTGCGCCGCGTGCCCCAAGCGGTTCACGCAGAGGCCGGCGCTCACGCGACACTACCGGCTGCGCATCCACGCGCGCCGCCACTCGGGCGAGCGGCCGTACGCGTGCGCCGCGTGCCCCAAGCGGTTCACGCAGAGGCCGGCGCTCACGCGACACTACCGGCTGCGCATCCACGCGCGCCGCCACTCGGGCGAGCGGCCGTACGCGTGCGCCGCGTGCCCCAAGCGGTTCACGCAGAGGCCGGCGCTCACGCGACACTACCGGCTGCGCATCCACGCGCGCCGCCACTCGGGCGAGCGGCCGTACGCGTGCGCCGCGTGCCCCAAGCGGTTCACGCAGAGGCCGGCGCTCACGCGACACTACCGGCTGCGCATCCACGCGCGCCGCCACTCGGGCGAGCGGCCGTACGCGTGCGCCGCGTGCCCCAAGCGGTTCACGCAGAGGCCGGCGCTCACGCGACACTACCGGCTGCGCATCCACGCGCGCCGCCACTCGGGCGAGCGGCCGTACGCGTGCGCCGCGTGCCCCAAGCGGTTCACGCAGAGGCCGGCGCTCACGCGGCACTACCGGCTGCGCATCCACGCGCGCCGCCACTCGGGCGAGCGGCCGTACGCGTGCGCCGCGTGCCCCAAGCGGTTCACGCAGAGGCCGGCGCTCACGCGACACTACCGGCTGCGCATCCACGCGCGCCGCCACTCGGGCGAGCGGCCGTACGCGTGCGCCGCGTGCCCCAAGCGGTTCACGCAGAGGCCGGCGCTCACGCGGCACTACCGGCTGCGCATCCACGCGCGCCGCCACTCGGGCGAGCGGCCGTACGCGTGCGCCGCGTGCCCCAAGCGGTTCACGCAGAGGCCGGCGCTCACGCGACACTACCGGCTGCGCATCCACGCGCGCCGCCACTCGGGCGAGCGGCCGTACGCGTGCGCCGCGTGCCCCAAGCGGTTCACGCAGAGGCCGGCGCTCACGCGACACTACCGGCTGCGCATCCACGCGCGCCGCCACTCGGGCGAGCGGCCGTACGCGTGCGCCGCGTGCCCCAAGCGGTTCACGCAGAGGCCGGCGCTCACGCGGCACTACCGGCTGCGCATCCACGCGCGCCGCCACTCGGGCGAGCGGCCGTACGCGTGCGCCGCGTGCCCCAAGCGGTTCACGCAGAGGCCGGCGCTCACGCGACACTACCGGCTGCGCATCCACGCGCGCCGCCACTCGGGCGAGCGGCCGTACGCGTGCGCCGCGTGCCCCAAGCGGTTCACGCAGAGGCCGGCGCTCACGCGACACTACCGGGTACACACCGGCGCTAAGCCCTACGAGTGCCAGTTGTGTTCGAAGAGCTTCAGCCAGTCCAACTCGGTCAAGCTGCACGTCAACACTGTCCACCTGAAGCTGGGCTCGCGCCGGTACCGCGAGGACAAGCCGCGCCCCGCGGGATCTGCTGATGTGCTGCAGCCTGGCGTGTCTGTGCGTTAA
- Protein Sequence
- MDISQICKICLSMNVQMFNITNTSLQEMYEKLTSLPFSKLTGIAETVCYQCAARLRSCRRLQQTATRAAEVLTLLLSGNSMVEESLRHFQGHIPSGKLIVDVLESIDIGGNTDDVKSEPEDIKIEPAREEKGIEHVQNSDGECNEPADTAPPSDSDDDLPLKSISTKGRGGGARQTARKRRKKTEAVLDAVEVTLSREQQREELAARAQSANYLHSPYRCRLCFRGFVDPGAHRNHALRHSEELAARAQSANYLHSPYRCRLCFRGFVDPGAHRNHALRHSEAHGALECPVCRLRYPSARQLRAHAAAAHERRYVCNRCPHRAHTKNQALEHEKWHNGHTYPCRLCGETFSKPTTYLTHLRKAHASEHVCARCGHSFVGRHGLLMHASKAHRAPDPLRGAARAAHAREQGAPRARPGECTHASEHVCGHSFVGRHGLLMHASKAHRAPDPLRGAARAAHAREQGAPRARPGECTHASEHVCGHSFVGRHGLLMHASKAHRAPDPEPNPEESPDTRSCKDCEILFASREAWTRHMLVSVKHEPWTEDGACVVCGEAVPAELRREHERAHVRALRPAPAPASAPAPASAPLALLACDQCESRFASAARLRAHVRRVHLGLKYDKNVICELCGKKCTSEATLRYHQRRHTGLRPYRCATCDARFSDSNQLRIHARRHSGERPYACAACPKRFTQRPALTRHYRLRIHARRHSGERPYACAACPKRFTQRPALTRHYRLRIHARRHSGERPYACAACPKRFTQRPALTRHYRLRIHARRHSGERPYACAACPKRFTQRPALTRHYRLRIHARRHSGERPYACAACPKRFTQRPALTRHYRLRIHARRHSGERPYACAACPKRFTQRPALTRHYRLRIHARRHSGERPYACAACPKRFTQRPALTRHYRLRIHARRHSGERPYACAACPKRFTQRPALTRHYWLRIHARRHSGERPYACAACPKRFTQRPALTRHYRLRIHARRHSGERPYACAACPKRFTQRPALTRHYRLRIHARRHSGERPYACAACPKRFTQRPALTRHYRLRIHARRHSGERPYACAACPKRFTQRPALTRHYRLRIHARRHSGERPYACAACPKRFTQRPALTRHYRLRIHARRHSGERPYACAACPKRFTQRPALTRHYRLRIHARRHSGERPYACAACPKRFTQRPALTRHYRLRIHARRHSGERPYACAACPKRFTQRPALTRHYRLRIHARRHSGERPYACAACPKRFTQRPALTRHYRLRIHARRHSGERPYACAACPKRFTQRPALTRHYRLRIHARRHSGERPYACAACPKRFTQRPALTRHYRLRIHARRHSGERPYACAACPKRFTQRPALTRHYRLRIHARRHSGERPYACAACPKRFTQRPALTRHYRLRIHARRHSGERPYACAACPKRFTQRPALTRHYRLRIHARRHSGERPYACAACPKRFTQRPALTRHYRLRIHARRHSGERPYACAACPKRFTQRPALTRHYRLRIHARRHSGERPYACAACPKRFTQRPALTRHYRLRIHARRHSGERPYACAACPKRFTQRPALTRHYRLRIHARRHSGERPYACAACPKRFTQRPALTRHYRVHTGAKPYECQLCSKSFSQSNSVKLHVNTVHLKLGSRRYREDKPRPAGSADVLQPGVSVR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -