Cpal017770.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Carterocephalus palaemon
Gene Symbol
Zfa
Assembly
GCA_944567795.1
Location
CALYMS010000670.1:13306-26360[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 36 3.1e-05 0.0018 18.7 1.2 2 23 11 33 11 33 0.94
2 36 6.3e-05 0.0037 17.8 0.5 2 20 47 65 47 67 0.94
3 36 3.1e-05 0.0018 18.7 1.2 2 23 85 107 85 107 0.94
4 36 2.2e-06 0.00013 22.4 0.3 2 23 121 142 121 142 0.98
5 36 0.001 0.061 13.9 3.6 1 23 148 170 148 170 0.98
6 36 0.0016 0.096 13.3 1.9 1 22 176 197 176 201 0.93
7 36 0.0011 0.065 13.8 0.2 1 23 209 232 209 232 0.94
8 36 0.029 1.7 9.4 0.0 1 23 238 261 238 261 0.97
9 36 1.7e-05 0.00099 19.6 0.7 1 23 270 292 270 292 0.98
10 36 5e-05 0.0029 18.1 0.4 1 23 298 321 298 321 0.95
11 36 5e-05 0.0029 18.1 0.4 1 23 351 374 351 374 0.95
12 36 0.00011 0.0064 17.0 0.5 1 23 404 427 404 427 0.95
13 36 0.00011 0.0064 17.0 0.5 1 23 436 459 436 459 0.95
14 36 0.00011 0.0064 17.0 0.5 1 23 529 552 529 552 0.95
15 36 5e-05 0.0029 18.1 0.4 1 23 561 584 561 584 0.95
16 36 0.00011 0.0064 17.0 0.5 1 23 614 637 614 637 0.95
17 36 0.0022 0.13 12.9 1.5 2 23 644 666 644 666 0.95
18 36 0.00011 0.0064 17.0 0.5 1 23 748 771 748 771 0.95
19 36 0.00011 0.0064 17.0 0.5 1 23 833 856 833 856 0.95
20 36 0.00011 0.0064 17.0 0.5 1 23 913 936 913 936 0.95
21 36 0.00011 0.0064 17.0 0.5 1 23 993 1016 993 1016 0.95
22 36 0.00011 0.0064 17.0 0.5 1 23 1046 1069 1046 1069 0.95
23 36 0.00011 0.0064 17.0 0.5 1 23 1137 1160 1137 1160 0.95
24 36 0.00011 0.0064 17.0 0.5 1 23 1202 1225 1202 1225 0.95
25 36 5e-05 0.0029 18.1 0.4 1 23 1267 1290 1267 1290 0.95
26 36 0.00011 0.0064 17.0 0.5 1 23 1320 1343 1320 1343 0.95
27 36 0.0022 0.13 12.9 1.5 2 23 1350 1372 1350 1372 0.95
28 36 0.00011 0.0064 17.0 0.5 1 23 1424 1447 1424 1447 0.95
29 36 0.00011 0.0064 17.0 0.5 1 23 1473 1496 1473 1496 0.95
30 36 5e-05 0.0029 18.1 0.4 1 23 1521 1544 1521 1544 0.95
31 36 0.00011 0.0064 17.0 0.5 1 23 1574 1597 1574 1597 0.95
32 36 0.0022 0.13 12.9 1.5 2 23 1604 1626 1604 1626 0.95
33 36 0.00011 0.0064 17.0 0.5 1 23 1678 1701 1678 1701 0.95
34 36 0.00051 0.03 14.9 0.9 2 23 1708 1730 1708 1730 0.95
35 36 0.00011 0.0064 17.0 0.5 1 23 1761 1784 1761 1784 0.95
36 36 0.00011 0.0064 17.0 0.5 1 23 1793 1816 1793 1816 0.95

Sequence Information

Coding Sequence
ATGCGCAACCAccacggcggcgcgcggcccaaGTGCGACGAGTGCGGGAAGACATTCATCAACAAGGACTCGCTCGCGGAGCACCAGCACGAGACCCACCGGGGCCACGTGCGCAACCAccacggcggcgcgcggcccaaGTGCGACGAGTGCGGGAAGACATTCATCAACAAGGACTCGCTCGCGGAGCACCAGCACAACGGCGAGACCCACCGGGGCCACGTGCGCAACCAccacggcggcgcgcggcccaaGTGCGACGAGTGCGGGAAGACATTCATCAACAAGGACTCGCTCGCGGAGCACCAGCACGAGACCCACCGGGGCCACGTGCGCAACCAccacggcggcgcgcggcccaaGTGCGACGAGTGCGGGAAGACATTCATCAACAAGGACTCGCTCGCGGAGCACCAGCAGATCCACCAGGGAATCAAGAACTACGAGTGCCAGATCTGCGGCAGCCGGTTCAGAACGCGGAACCAGATCAAGCATCACCAGCTCAAGCACACCGACGTCAAGGAGTACTACTGCGTGGAGTGCGACGTCAGGTTTAAATCAGCGCACACACTACGACAGCACCTGCAGAAGAGTCTCAAGCACAAGGACCTGCAGAGTCTCAAGTACGAGTGCGCGCGCTGCCAGAAGCGGTTCGAGACggagcgcgcgctgcagcggcacGCGGCCGTGCAGCACGACGGCGTGCGCGCGTTCAGGTGCGCGCAGTGCCCCGCGGCGCTGGCCACGGCGGGCTCGCTGGCGAAGCACGCGCGCGTCGTGCACGCCGGGCGACGCCCGCCGCCGCGGCACGTGTGCGACACGTGCGGGAAGGTCTTCCGGGGTAAGAGCGTGCTGGTGAACCACGTCCgcacgcacacgggcgagaagccgttcgagtgctccgtgtgcgggcgcacgttcacgcagcgcacggccatgcgcacgcacgtgcagctcgtgcacCTCAAGCTGGCGCGCCGCAAGGTGAGCCCgaggacggacggacggacggacatggcccacgtgcgcacgcacacgggcgagaagccgttcgagtgctccgtgtgcgggcgcacgttcacgcagcgcacggccatgcgcacgcacgtgcagctcgtgcacCTCAAGCTGGCGCGCCGCAAGGTGAGCCCgaggacggacggacggacggacatggcccacgtgcgcacgcacacgggcgagaagccgttcgagtgctccgtgtgcgggcgcaagttcacgcagcgcacggccatgcgcacgcacgtgcagctcgtgcacCTCAAGCTGGCGCGCCGCAAGccgttcgagtgctccgtgtgcgggcgcaagttcacgcagcgcacggccatgcgcacgcacgtgcagctcgtgcacCTCAAGCTGGCGCGCCGCAAGGTGAGCCCcaggacggacggacggacggacggacatggcccacgtgcgcacgcacacgggcgagaagccgttcgagtgctccgtgtgcgggcgcaagttcacgcagcgcacggccatgcgcacgcacgacggacggacggacggacggacatggcccacgtgcgcacgcacacgggcgagaagccgttcgagtgctccgtgtgcgggcgcaagttcacgcagcgcacggccatgcgcacgcacgtgcagctcgtgcacCTCAAGCTGGCGCGCCGCAAGccgttcgagtgctccgtgtgcgggcgcacgttcacgcagcgcacggccatgcgcacgcacgtgcagctcgtgcacCTCAAGCTGGCGCGCCGCAAGGTGAGCCCgaggacggacggacggacggacatggcccacgtgcgcacgcacacgggcgagaagccgttcgagtgctccgtgtgcgggcgcaagttcacgcagcgcacggccatgcgcacgcacgtgcagctcgtgcacCTCAAGCTGGCGCGCCGCAAGtgctccgtgtgcgggcgcaagttcacgcagcgcacgttcatgcgcacgcacgtgcagctcgtgcaTCTCAAGCTGGCGCGCCGCAAGGTGAGCCCcaggacggacggacggacggacggacatggcccacgtgcacacgcacacgggcgagaagccgttcgagtgctccgtgtgcgggcgcaagttcacgcagcgcacggccatgcgcacgcacgtgcagctcgtgcacctcaagctggcgcgccgcaaggtaagacggacggacggacggacatggcccacgtgcacacgcacacgggcgagaagccgttcgagtgctccgtgtgcgggcgcaagttcacgcagcgcacggccatgcgcacgcacgtgcagctcgtgcacctcaagctggcgcgccgcaaggtaagacggacggacggacggacatggcccacgtgcacacgcacacgggcgagaagccgttcgagtgctccgtctcgtgcacctcaagctggcgcgccgcaaggtaagacggacggacggacggacatggcccacgtgcacacgcacacgggcgagaagccgttcgagtgctccgtgtgcgggcgcaagttcacgcagcgcacggccatgcgcacgcacgtgcagctcgtgcacctcaagctggcgcgccgcaaggtaagacggacggacggacggacatggcccacgtgcacacgcacacgggcgagaagccctcgtgcacctcaagctggcgcgccgcaaggtaagacggacggacggacggacatggcccacgtgcacacgcacacgggcgagaagccgttcgagtgctccgtgtgcgggcgcaagttcacgcagcgcacggccatgcgcacgcacgtgcagctcgtgcacctcaagctggcgcgccgcaaggtaagacggacggacggacggacatggcccacgtgcacacgcacacgggcgagaagccctcgtgcacctcaagctggcgcgccgcaaggtaagacggacggacggacggacatggcccacgtgcacacgcacacgggcgagaagccgttcgagtgctccgtgtgcgggcgcaagttcacgcagcgcacggccatgcgcacgcacgtgcagctcgtgcacCTCAAGCTGGCGCGCCGCAAGGTGAGCCCgaggacggacggacggacggacatggcccacgtgcgcacgcacacgggcgagaagccgttcgagtgctccgtgtgcgggcgcaagttcacgcagcgcacggccatgcgcacgcacgtgcagctcgtgcacCTCAAGCTGGCGCGCCGCAAGATGAGCCCcaggacggacggacggacggacagacatggcccacgtgcgcacgcacacgggcgagaagccgttcgagtgctccgtctcgtgcacCTCAAGCTGGCGCGCCGCAAGGTGAGCCCgaggacggacggacggacggacatggcccacgtgcgcacgcacacgggcgagaagccgttcgagtgctccgtgtgcgggcgcaagttcacgcagcgcacggccatgcgcacgcacgtgcagctcgtgcacCTCAAGCTGGCGCGCCGCAAGGTGAGCCCcaggacggacggacggacggacggacatggcccacgacggacggacggacggacggacatggcccacgtgcgcacgcacacgggcgagaagccgttcgagtgctccgtgtgcgggcgcaagttcacgcagcgcacggccatgcgcacgcacgtgcagctcgtgcacCTCAAGCTGGCGCGCCGCAAGGTGAGCCCcaggacggacggacggacggacggacatggcccacgacggacggacggacggacggacatggcccacgtgcgcacgcacacgggcgagaagccgttcgagtgctccgtgtgcgggcgcacgttcacgcagcgcacggccatgcgcacgcacgtgcagctcgtgcacCTCAAGCTGGCGCGCCGCAAGGTGAGCCCgaggacggacggacggacggacatggcccacgtgcgcacgcacacgggcgagaagccgttcgagtgctccgtgtgcgggcgcaagttcacgcagcgcacggccatgcgcacgcacgtgcagctcgtgcacCTCAAGCTGGCGCGCCGCAAGtgctccgtgtgcgggcgcaagttcacgcagcgcacgttcatgcgcacgcacgtgcagctcgtgcaTCTCAAGCTGGCGCGCCGCAAGGTGAGCCCcaggacggacggacggacggacggacatggcccacctcgtgcacctcaagctggcgcgccgcaaggtaagacggacggacggacggacatggcccacgtgcacacgcacacgggcgagaagccgttcgagtgctccgtgtgcgggcgcaagttcacgcagcgcacggccatgcgcacgcacgtgcagctcgtgcacctcaagctggcgcgccgcaagacggacggacggacggacatggcccacgtgcacacgcacacgggcgagaagccgttcgagtgctccgtgtgcgggcgcaagttcacgcagcgcacggccatgcgcacgcacgtgcagctcgtgcacctcaagctggcgcgccgcaaggacggacggacggacatggcccacgtgcgcacgcacacgggcgagaagccgttcgagtgctccgtgtgcgggcgcacgttcacgcagcgcacggccatgcgcacgcacgtgcagctcgtgcacCTCAAGCTGGCGCGCCGCAAGGTGAGCCCgaggacggacggacggacggacatggcccacgtgcgcacgcacacgggcgagaagccgttcgagtgctccgtgtgcgggcgcaagttcacgcagcgcacggccatgcgcacgcacgtgcagctcgtgcacCTCAAGCTGGCGCGCCGCAAGtgctccgtgtgcgggcgcaagttcacgcagcgcacgttcatgcgcacgcacgtgcagctcgtgcaTCTCAAGCTGGCGCGCCGCAAGGTGAGCCCcaggacggacggacggacggacggacatggcccacctcgtgcacctcaagctggcgcgccgcaaggtaagacggacggacggacggacatggcccacgtgcacacgcacacgggcgagaagccgttcgagtgctccgtgtgcgggcgcaagttcacgcagcgcacggccatgcgcacgcacgtgcagctcgtgcacctcaagctggcgcgccgcaagtgctccgtgtgcgggcgcaagttcacgcagcgcacggccatgcgcacgcacgtgcagctcgtgcacCTCAAGCTGGCGCGCCGCAAGGTGAGCCgaggacggacggacggacggacggacatggcccacgtgcgcacgcacacgggcgagaagccgttcgagtgctccgtgtgcgggcgcaagttcacgcagcgcacggccatgcgcacgcacgtgcagctcgtgcacCTCAAGCTGGCGCGCCGCAAGCCGTTCGAGTGCTCCGTGTGCGGGCGCAAGTTCACGCAGCGCACGGCCATGCGCAcgcacgtgcagctcgtgcacCTCAAGCTGGCGCGCCGCAAGGTGAAAGCGgagcccgcgccgccggggGCGAAGGCCGAGGCGGGCAAGGCGCCCCCGCTGTACGACTGGCGAAGCTCCAACTGCGAGTACTTCATCGTCACCGCGGGGACGTAG
Protein Sequence
MRNHHGGARPKCDECGKTFINKDSLAEHQHETHRGHVRNHHGGARPKCDECGKTFINKDSLAEHQHNGETHRGHVRNHHGGARPKCDECGKTFINKDSLAEHQHETHRGHVRNHHGGARPKCDECGKTFINKDSLAEHQQIHQGIKNYECQICGSRFRTRNQIKHHQLKHTDVKEYYCVECDVRFKSAHTLRQHLQKSLKHKDLQSLKYECARCQKRFETERALQRHAAVQHDGVRAFRCAQCPAALATAGSLAKHARVVHAGRRPPPRHVCDTCGKVFRGKSVLVNHVRTHTGEKPFECSVCGRTFTQRTAMRTHVQLVHLKLARRKVSPRTDGRTDMAHVRTHTGEKPFECSVCGRTFTQRTAMRTHVQLVHLKLARRKVSPRTDGRTDMAHVRTHTGEKPFECSVCGRKFTQRTAMRTHVQLVHLKLARRKPFECSVCGRKFTQRTAMRTHVQLVHLKLARRKVSPRTDGRTDGHGPRAHAHGREAVRVLRVRAQVHAAHGHAHARRTDGRTDMAHVRTHTGEKPFECSVCGRKFTQRTAMRTHVQLVHLKLARRKPFECSVCGRTFTQRTAMRTHVQLVHLKLARRKVSPRTDGRTDMAHVRTHTGEKPFECSVCGRKFTQRTAMRTHVQLVHLKLARRKCSVCGRKFTQRTFMRTHVQLVHLKLARRKVSPRTDGRTDGHGPRAHAHGREAVRVLRVRAQVHAAHGHAHARAARAPQAGAPQGKTDGRTDMAHVHTHTGEKPFECSVCGRKFTQRTAMRTHVQLVHLKLARRKVRRTDGRTWPTCTRTRARSRSSAPSRAPQAGAPQGKTDGRTDMAHVHTHTGEKPFECSVCGRKFTQRTAMRTHVQLVHLKLARRKVRRTDGRTWPTCTRTRARSPRAPQAGAPQGKTDGRTDMAHVHTHTGEKPFECSVCGRKFTQRTAMRTHVQLVHLKLARRKVRRTDGRTWPTCTRTRARSPRAPQAGAPQGKTDGRTDMAHVHTHTGEKPFECSVCGRKFTQRTAMRTHVQLVHLKLARRKVSPRTDGRTDMAHVRTHTGEKPFECSVCGRKFTQRTAMRTHVQLVHLKLARRKMSPRTDGRTDRHGPRAHAHGREAVRVLRLVHLKLARRKVSPRTDGRTDMAHVRTHTGEKPFECSVCGRKFTQRTAMRTHVQLVHLKLARRKVSPRTDGRTDGHGPRRTDGRTDMAHVRTHTGEKPFECSVCGRKFTQRTAMRTHVQLVHLKLARRKVSPRTDGRTDGHGPRRTDGRTDMAHVRTHTGEKPFECSVCGRTFTQRTAMRTHVQLVHLKLARRKVSPRTDGRTDMAHVRTHTGEKPFECSVCGRKFTQRTAMRTHVQLVHLKLARRKCSVCGRKFTQRTFMRTHVQLVHLKLARRKVSPRTDGRTDGHGPPRAPQAGAPQGKTDGRTDMAHVHTHTGEKPFECSVCGRKFTQRTAMRTHVQLVHLKLARRKTDGRTDMAHVHTHTGEKPFECSVCGRKFTQRTAMRTHVQLVHLKLARRKDGRTDMAHVRTHTGEKPFECSVCGRTFTQRTAMRTHVQLVHLKLARRKVSPRTDGRTDMAHVRTHTGEKPFECSVCGRKFTQRTAMRTHVQLVHLKLARRKCSVCGRKFTQRTFMRTHVQLVHLKLARRKVSPRTDGRTDGHGPPRAPQAGAPQGKTDGRTDMAHVHTHTGEKPFECSVCGRKFTQRTAMRTHVQLVHLKLARRKCSVCGRKFTQRTAMRTHVQLVHLKLARRKVSRGRTDGRTDMAHVRTHTGEKPFECSVCGRKFTQRTAMRTHVQLVHLKLARRKPFECSVCGRKFTQRTAMRTHVQLVHLKLARRKVKAEPAPPGAKAEAGKAPPLYDWRSSNCEYFIVTAGT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-