Cpal009448.2
Basic Information
- Insect
- Carterocephalus palaemon
- Gene Symbol
- -
- Assembly
- GCA_944567795.1
- Location
- CALYMS010000120.1:1100836-1111782[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 42 0.011 0.67 10.7 2.5 2 23 74 96 73 96 0.94 2 42 0.00054 0.032 14.8 0.0 1 23 102 124 102 124 0.97 3 42 0.00054 0.032 14.8 0.0 1 23 143 165 143 165 0.97 4 42 0.00054 0.032 14.8 0.0 1 23 184 206 184 206 0.97 5 42 0.00054 0.032 14.8 0.0 1 23 225 247 225 247 0.97 6 42 0.00054 0.032 14.8 0.0 1 23 266 288 266 288 0.97 7 42 0.00054 0.032 14.8 0.0 1 23 307 329 307 329 0.97 8 42 0.00054 0.032 14.8 0.0 1 23 348 370 348 370 0.97 9 42 0.00054 0.032 14.8 0.0 1 23 389 411 389 411 0.97 10 42 0.00054 0.032 14.8 0.0 1 23 430 452 430 452 0.97 11 42 0.00054 0.032 14.8 0.0 1 23 471 493 471 493 0.97 12 42 0.00054 0.032 14.8 0.0 1 23 512 534 512 534 0.97 13 42 0.00054 0.032 14.8 0.0 1 23 553 575 553 575 0.97 14 42 0.00054 0.032 14.8 0.0 1 23 594 616 594 616 0.97 15 42 0.00054 0.032 14.8 0.0 1 23 635 657 635 657 0.97 16 42 0.00054 0.032 14.8 0.0 1 23 676 698 676 698 0.97 17 42 0.00054 0.032 14.8 0.0 1 23 717 739 717 739 0.97 18 42 0.00054 0.032 14.8 0.0 1 23 758 780 758 780 0.97 19 42 0.00054 0.032 14.8 0.0 1 23 799 821 799 821 0.97 20 42 0.00054 0.032 14.8 0.0 1 23 840 862 840 862 0.97 21 42 0.00054 0.032 14.8 0.0 1 23 881 903 881 903 0.97 22 42 0.00054 0.032 14.8 0.0 1 23 922 944 922 944 0.97 23 42 0.00054 0.032 14.8 0.0 1 23 963 985 963 985 0.97 24 42 0.00054 0.032 14.8 0.0 1 23 1004 1026 1004 1026 0.97 25 42 0.00054 0.032 14.8 0.0 1 23 1045 1067 1045 1067 0.97 26 42 0.00054 0.032 14.8 0.0 1 23 1086 1108 1086 1108 0.97 27 42 0.00054 0.032 14.8 0.0 1 23 1127 1149 1127 1149 0.97 28 42 0.00054 0.032 14.8 0.0 1 23 1168 1190 1168 1190 0.97 29 42 0.00054 0.032 14.8 0.0 1 23 1209 1231 1209 1231 0.97 30 42 0.00054 0.032 14.8 0.0 1 23 1250 1272 1250 1272 0.97 31 42 0.00054 0.032 14.8 0.0 1 23 1291 1313 1291 1313 0.97 32 42 0.00054 0.032 14.8 0.0 1 23 1332 1354 1332 1354 0.97 33 42 0.00054 0.032 14.8 0.0 1 23 1373 1395 1373 1395 0.97 34 42 0.00054 0.032 14.8 0.0 1 23 1414 1436 1414 1436 0.97 35 42 0.013 0.77 10.5 0.2 1 23 1445 1468 1445 1468 0.92 36 42 0.0017 0.1 13.2 3.9 5 23 1476 1494 1475 1494 0.96 37 42 0.00087 0.051 14.2 3.3 5 23 1514 1532 1500 1532 0.92 38 42 0.00087 0.051 14.2 3.3 5 23 1552 1570 1538 1570 0.92 39 42 2.2e-05 0.0013 19.2 0.8 1 23 1576 1598 1576 1598 0.97 40 42 0.00012 0.0068 16.9 5.7 1 23 1604 1626 1604 1626 0.98 41 42 7.1e-07 4.2e-05 23.9 0.3 1 23 1632 1654 1632 1654 0.98 42 42 0.04 2.3 8.9 1.8 1 23 1660 1682 1660 1682 0.95
Sequence Information
- Coding Sequence
- ATGAAAGATCAGGCGTCGCCGTGTTTGCCGGACCTCTCCGCCGCCGTGGAACCAAAGCAAGAGGTTTCATTGGTAGAGGACGTGGATCCCCTGGGCAATATTGTGGAGCAGCTGGTCCCTGATGGTGCAAGCTTGGAAACCAATCCCCTTGAGGTCGTGGAGGCGACTCCGAGCGCCAGCGCGGATGTGGCGCCACCGCCCGGCGGCGCACAGAAGCTCAAGTGCAACCACTGCGACAAGCTGTTCAGCAATAAGCAGAGCAAGTCGCTGCATATCAAGGCAGTTCACCTTGGCGAGCGGCCGTACGCGTGCAAGGAGTGCGGCGCGACGTTCGCGTACCCGCGCTCGCTCGCGCTGCACGCGGCCACGCACCGCCGCCGGCGCACCGGCAAGGGCTTCGCCTGCGACCTCTGCGGGAAGCGGCCGTACGCGTGCAAGGAGTGCGGCGCGACGTTCGCGTACCCGCGCTCGCTCGCGCTGCACGCGGCCACGCACCGCCGCCGGCGCACCGGCAAGGGCTTCGCCTGCGACCTCTGCGGGAAGCGGCCGTACGCGTGCAAGGAGTGCGGCGCGACGTTCGCGTACCCGCGCTCGCTCGCGCTGCACGCGGCCACGCACCGCCGCCGGCGCACCGGCAAGGGCTTCGCCTGCGACCTCTGCGGGAAGCGGCCGTACGCGTGCAAGGAGTGCGGCGCGACGTTCGCGTACCCGCGCTCGCTCGCGCTGCACGCGGCCACGCACCGCCGCCGGCGCACCGGCAAGGGCTTCGCCTGCGACCTCTGCGGGAAGCGGCCGTACGCGTGCAAGGAGTGCGGCGCGACGTTCGCGTACCCGCGCTCGCTCGCGCTGCACGCGGCCACGCACCGCCGCCGGCGCACCGGCAAGGGCTTCGCCTGCGACCTCTGCGGGAAGCGGCCGTACGCGTGCAAGGAGTGCGGCGCGACGTTCGCGTACCCGCGCTCGCTCGCGCTGCACGCGGCCACGCACCGCCGCCGGCGCACCGGCAAGGGCTTCGCCTGCGACCTCTGCGGGAAGCGGCCGTACGCGTGCAAGGAGTGCGGCGCGACGTTCGCGTACCCGCGCTCGCTCGCGCTGCACGCGGCCACGCACCGCCGCCGGCGCACCGGCAAGGGCTTCGCCTGCGACCTCTGCGGGAAGCGGCCGTACGCGTGCAAGGAGTGCGGCGCGACGTTCGCGTACCCGCGCTCGCTCGCGCTGCACGCGGCCACGCACCGCCGCCGGCGCACCGGCAAGGGCTTCGCCTGCGACCTCTGCGGGAAGCGGCCGTACGCGTGCAAGGAGTGCGGCGCGACGTTCGCGTACCCGCGCTCGCTCGCGCTGCACGCGGCCACGCACCGCCGCCGGCGCACCGGCAAGGGCTTCGCCTGCGACCTCTGCGGGAAGCGGCCGTACGCGTGCAAGGAGTGCGGCGCGACGTTCGCGTACCCGCGCTCGCTCGCGCTGCACGCGGCCACGCACCGCCGCCGGCGCACCGGCAAGGGCTTCGCCTGCGACCTCTGCGGGAAGCGGCCGTACGCGTGCAAGGAGTGCGGCGCGACGTTCGCGTACCCGCGCTCGCTCGCGCTGCACGCGGCCACGCACCGCCGCCGGCGCACCGGCAAGGGCTTCGCCTGCGACCTCTGCGGGAAGCGGCCGTACGCGTGCAAGGAGTGCGGCGCGACGTTCGCGTACCCGCGCTCGCTCGCGCTGCACGCGGCCACGCACCGCCGCCGGCGCACCGGCAAGGGCTTCGCCTGCGACCTCTGCGGGAAGCGGCCGTACGCGTGCAAGGAGTGCGGCGCGACGTTCGCGTACCCGCGCTCGCTCGCGCTGCACGCGGCCACGCACCGCCGCCGGCGCACCGGCAAGGGCTTCGCCTGCGACCTCTGCGGGAAGCGGCCGTACGCGTGCAAGGAGTGCGGCGCGACGTTCGCGTACCCGCGCTCGCTCGCGCTGCACGCGGCCACGCACCGCCGCCGGCGCACCGGCAAGGGCTTCGCCTGCGACCTCTGCGGGAAGCGGCCGTACGCGTGCAAGGAGTGCGGCGCGACGTTCGCGTACCCGCGCTCGCTCGCGCTGCACGCGGCCACGCACCGCCGCCGGCGCACCGGCAAGGGCTTCGCCTGCGACCTCTGCGGGAAGCGGCCGTACGCGTGCAAGGAGTGCGGCGCGACGTTCGCGTACCCGCGCTCGCTCGCGCTGCACGCGGCCACGCACCGCCGCCGGCGCACCGGCAAGGGCTTCGCCTGCGACCTCTGCGGGAAGCGGCCGTACGCGTGCAAGGAGTGCGGCGCGACGTTCGCGTACCCGCGCTCGCTCGCGCTGCACGCGGCCACGCACCGCCGCCGGCGCACCGGCAAGGGCTTCGCCTGCGACCTCTGCGGGAAGCGGCCGTACGCGTGCAAGGAGTGCGGCGCGACGTTCGCGTACCCGCGCTCGCTCGCGCTGCACGCGGCCACGCACCGCCGCCGGCGCACCGGCAAGGGCTTCGCCTGCGACCTCTGCGGGAAGCGGCCGTACGCGTGCAAGGAGTGCGGCGCGACGTTCGCGTACCCGCGCTCGCTCGCGCTGCACGCGGCCACGCACCGCCGCCGGCGCACCGGCAAGGGCTTCGCCTGCGACCTCTGCGGGAAGCGGCCGTACGCGTGCAAGGAGTGCGGCGCGACGTTCGCGTACCCGCGCTCGCTCGCGCTGCACGCGGCCACGCACCGCCGCCGGCGCACCGGCAAGGGCTTCGCCTGCGACCTCTGCGGGAAGCGGCCGTACGCGTGCAAGGAGTGCGGCGCGACGTTCGCGTACCCGCGCTCGCTCGCGCTGCACGCGGCCACGCACCGCCGCCGGCGCACCGGCAAGGGCTTCGCCTGCGACCTCTGCGGGAAGCGGCCGTACGCGTGCAAGGAGTGCGGCGCGACGTTCGCGTACCCGCGCTCGCTCGCGCTGCACGCGGCCACGCACCGCCGCCGGCGCACCGGCAAGGGCTTCGCCTGCGACCTCTGCGGGAAGCGGCCGTACGCGTGCAAGGAGTGCGGCGCGACGTTCGCGTACCCGCGCTCGCTCGCGCTGCACGCGGCCACGCACCGCCGCCGGCGCACCGGCAAGGGCTTCGCCTGCGACCTCTGCGGGAAGCGGCCGTACGCGTGCAAGGAGTGCGGCGCGACGTTCGCGTACCCGCGCTCGCTCGCGCTGCACGCGGCCACGCACCGCCGCCGGCGCACCGGCAAGGGCTTCGCCTGCGACCTCTGCGGGAAGCGGCCGTACGCGTGCAAGGAGTGCGGCGCGACGTTCGCGTACCCGCGCTCGCTCGCGCTGCACGCGGCCACGCACCGCCGCCGGCGCACCGGCAAGGGCTTCGCCTGCGACCTCTGCGGGAAGCGGCCGTACGCGTGCAAGGAGTGCGGCGCGACGTTCGCGTACCCGCGCTCGCTCGCGCTGCACGCGGCCACGCACCGCCGCCGGCGCACCGGCAAGGGCTTCGCCTGCGACCTCTGCGGGAAGCGGCCGTACGCGTGCAAGGAGTGCGGCGCGACGTTCGCGTACCCGCGCTCGCTCGCGCTGCACGCGGCCACGCACCGCCGCCGGCGCACCGGCAAGGGCTTCGCCTGCGACCTCTGCGGGAAGCGGCCGTACGCGTGCAAGGAGTGCGGCGCGACGTTCGCGTACCCGCGCTCGCTCGCGCTGCACGCGGCCACGCACCGCCGCCGGCGCACCGGCAAGGGCTTCGCCTGCGACCTCTGCGGGAAGCGGCCGTACGCGTGCAAGGAGTGCGGCGCGACGTTCGCGTACCCGCGCTCGCTCGCGCTGCACGCGGCCACGCACCGCCGCCGGCGCACCGGCAAGGGCTTCGCCTGCGACCTCTGCGGGAAGCGGCCGTACGCGTGCAAGGAGTGCGGCGCGACGTTCGCGTACCCGCGCTCGCTCGCGCTGCACGCGGCCACGCACCGCCGCCGGCGCACCGGCAAGGGCTTCGCCTGCGACCTCTGCGGGAAGCGGCCGTACGCGTGCAAGGAGTGCGGCGCGACGTTCGCGTACCCGCGCTCGCTCGCGCTGCACGCGGCCACGCACCGCCGCCGGCGCACCGGCAAGGGCTTCGCCTGCGACCTCTGCGGGAAGCGGCCGTACGCGTGCAAGGAGTGCGGCGCGACGTTCGCGTACCCGCGCTCGCTCGCGCTGCACGCGGCCACGCACCGCCGCCGGCGCACCGGCAAGGGCTTCGCCTGCGACCTCTGCGGGAAGCGGCCGTACGCGTGCAAGGAGTGCGGCGCGACGTTCGCGTACCCGCGCTCGCTCGCGCTGCACGCGGCCACGCACCGCCGCCGGCGCACCGGCAAGGGCTTCGCCTGCGACCTCTGCGGGAAGGTACTGTCACACCCGTCGTCGGTGGTGTACCACAAGCAGGCTGTGCACGCGAGCCAGCAGTACGTGTGCACCTGCGGCAAGCGGTTCCGCCACAAGCAGCTGCTGCAGCGGCACCAGCTGGTGCACACGCAGGCGCGCCCCTTCGTCTGCAAGGCGGTGCACGCGAGCCAGCAGTACGTGTGCACTTGCGGCAAGCGGTTCCGCCACAAGCAGCTGCTGCAGCGGCACCAGCTGGTGCACACGCAGGCGCGCCCCTTCGTGTGCAAGGCGGTGCACGCGAGCCAGCAGTACGTGTGCACCTGCGGCAAGCGGTTCCGCCACAAGCAGCTGCTGCAGCGGCACCAGCTGGTGCACACGCAGGCGCGCCCCTTCGTCTGCAAGATTTGTTCGGCCAAATTCAAGACCAAGGCGAATCTGATGAACCACCAGCTGCTCCACTATGGCGTGAAGAAGTTCTCTTGCGAGATCTGCAAGCACCGCTTCTCGCACAAGACTAGCTTGACGCTTCACATGCGATGGCATTCCGGCGTGAAACCGTTCTCGTGCGGGGTGTGCGGCAAGAGCTTCAGCCAGAAGGGGAACCTGTCGGAGCACGAGCGCATCCACACGGGGGAGAAGCCGTACGCGTGCGCGCTCTGCCCGCGCCGGTTCACCACCTCCTCGCAGCACCGCCTGCACACGGCCCGGCACGCCAGGTGA
- Protein Sequence
- MKDQASPCLPDLSAAVEPKQEVSLVEDVDPLGNIVEQLVPDGASLETNPLEVVEATPSASADVAPPPGGAQKLKCNHCDKLFSNKQSKSLHIKAVHLGERPYACKECGATFAYPRSLALHAATHRRRRTGKGFACDLCGKRPYACKECGATFAYPRSLALHAATHRRRRTGKGFACDLCGKRPYACKECGATFAYPRSLALHAATHRRRRTGKGFACDLCGKRPYACKECGATFAYPRSLALHAATHRRRRTGKGFACDLCGKRPYACKECGATFAYPRSLALHAATHRRRRTGKGFACDLCGKRPYACKECGATFAYPRSLALHAATHRRRRTGKGFACDLCGKRPYACKECGATFAYPRSLALHAATHRRRRTGKGFACDLCGKRPYACKECGATFAYPRSLALHAATHRRRRTGKGFACDLCGKRPYACKECGATFAYPRSLALHAATHRRRRTGKGFACDLCGKRPYACKECGATFAYPRSLALHAATHRRRRTGKGFACDLCGKRPYACKECGATFAYPRSLALHAATHRRRRTGKGFACDLCGKRPYACKECGATFAYPRSLALHAATHRRRRTGKGFACDLCGKRPYACKECGATFAYPRSLALHAATHRRRRTGKGFACDLCGKRPYACKECGATFAYPRSLALHAATHRRRRTGKGFACDLCGKRPYACKECGATFAYPRSLALHAATHRRRRTGKGFACDLCGKRPYACKECGATFAYPRSLALHAATHRRRRTGKGFACDLCGKRPYACKECGATFAYPRSLALHAATHRRRRTGKGFACDLCGKRPYACKECGATFAYPRSLALHAATHRRRRTGKGFACDLCGKRPYACKECGATFAYPRSLALHAATHRRRRTGKGFACDLCGKRPYACKECGATFAYPRSLALHAATHRRRRTGKGFACDLCGKRPYACKECGATFAYPRSLALHAATHRRRRTGKGFACDLCGKRPYACKECGATFAYPRSLALHAATHRRRRTGKGFACDLCGKRPYACKECGATFAYPRSLALHAATHRRRRTGKGFACDLCGKRPYACKECGATFAYPRSLALHAATHRRRRTGKGFACDLCGKRPYACKECGATFAYPRSLALHAATHRRRRTGKGFACDLCGKRPYACKECGATFAYPRSLALHAATHRRRRTGKGFACDLCGKRPYACKECGATFAYPRSLALHAATHRRRRTGKGFACDLCGKRPYACKECGATFAYPRSLALHAATHRRRRTGKGFACDLCGKRPYACKECGATFAYPRSLALHAATHRRRRTGKGFACDLCGKRPYACKECGATFAYPRSLALHAATHRRRRTGKGFACDLCGKRPYACKECGATFAYPRSLALHAATHRRRRTGKGFACDLCGKRPYACKECGATFAYPRSLALHAATHRRRRTGKGFACDLCGKRPYACKECGATFAYPRSLALHAATHRRRRTGKGFACDLCGKVLSHPSSVVYHKQAVHASQQYVCTCGKRFRHKQLLQRHQLVHTQARPFVCKAVHASQQYVCTCGKRFRHKQLLQRHQLVHTQARPFVCKAVHASQQYVCTCGKRFRHKQLLQRHQLVHTQARPFVCKICSAKFKTKANLMNHQLLHYGVKKFSCEICKHRFSHKTSLTLHMRWHSGVKPFSCGVCGKSFSQKGNLSEHERIHTGEKPYACALCPRRFTTSSQHRLHTARHAR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -