Cpal005175.1
Basic Information
- Insect
- Carterocephalus palaemon
- Gene Symbol
- -
- Assembly
- GCA_944567795.1
- Location
- CALYMS010000059.1:109206-115433[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 1.8e-10 2.6e-07 30.4 0.1 1 35 164 199 164 207 0.91 2 5 1.8e-10 2.6e-07 30.4 0.1 1 35 218 253 218 261 0.91 3 5 1.8e-10 2.6e-07 30.4 0.1 1 35 272 307 272 315 0.91 4 5 3.5e-06 0.0049 16.7 0.2 1 26 326 351 326 351 0.96 5 5 2.4e-10 3.3e-07 30.0 0.1 1 35 354 389 354 392 0.93
Sequence Information
- Coding Sequence
- ATGATTTGTGAGTGGTGCGCGGAGCGGCTGCGGGGGGCCCTGGAGTTCCGCCGGGAGGTGCTGGCCTGCGAGCAGCTGCGGCAGGAGCACCTGGCCAGCGCAGCAGGTCAGAAGATGGACATTATAAAATCAGAAGCTTATGATAATGAGTGCTCGGCTCAGCCCGACCACCTCGAGCAGCAGTCGGAGGGCAGCGACGGCCCGGATGGACAGTTTGCAGATGTGCAGTATCTTGAACTCGATGAAGACTATATTAGTGAAGATGAGGGAGAAATGGACGAGAGCTTATTACATGGAGCTAAGGAATCACTGAAGGGCACGACTGACTTTGAAGAAGAATACCCGGAGCTTGAGAGACCGGAACCAGAGAAGCTTAAGAGGCGAGCGCGGGGGAGGGCGGAAGGAGACGACGAGTCGAACAGCAGCAGAGCCAAGAGGGGGGTGGTGCGCGGCGCTCGCGGGGCGCGCGGCTGGGTGTACAAGCAGTACACGCGCGCGGAGCTGGCGGCGGCCGTGcggggcgtgcggcgcggggAGCTGAGCCGCGCGCAGGCCTGCCGCCGGTACCGCGTGCCGCGCAAGACGCTCCACGCCAAGCTGCTCGCCGCAGGTACACACTCCGGGGCGCGCGGCTGGGTGTACAAGCAGTACACGCGCGCGGAGCTGGCGGCGGCCGTGcggggcgtgcggcgcggggAGCTGAGCCGCGCGCAGGCCTGCCGCCGGTACCGCGTGCCGCGCAAGACGCTCCACGCCAAGCTGCTCGCCGCAGGTACACACTCCGGGGCGCGCGGCTGGGTGTACAAGCAGTACACGCGCGCGGAGCTGGCGGCGGCCGTGcggggcgtgcggcgcggggAGCTGAGCCGCGCGCAGGCCTGCCGCCGGTACCGCGTGCCGCGCAAGACGCTCCACGCCAAGCTGCTCGCCGCAGGTACACACTCCGGGGCGCGCGGCTGGGTGTACAAGCAGTACACGCGCGCGGAGCTGGCGGCGGCCGTGcggggcgtgcggcgcggggAGCTGAGCCGCGCGCAGGCCTGCCGCCGGTACCGCTACACGCGCGCGGAGCTGGCGGCGGCCGTGcggggcgtgcggcgcggggAGCTGAGCCGCGCGCAGGCCTGCCGCCGGTACCGCGTGCCGCGCAAGACGCTCCACGCCAAGCTGCTCGCCGCAGCTGATGCGGAAGACGCAGCGAAGCAGGTCGAGGGGGTGGAGGAGGCGGGGGGCAAGGGGGGGGCGGAGCGCCACGCGCGGCTCGTGCGCGAGCTGCGGCAGCTGCTGGAGCACACCAACGCGGTGCCCTTCAAGACGCGCGCCGGCCGGTACTTCTGCGCCTACTGCTCCACCGCCGGCCCGTGCTTCGAGGAGCccgaggagctgcgcgcgcacacgctggcggcgcacgcggcggAGCGCTCGCGCGGGCTGGAGCTGGCGCTGCGCCCCGCCTGGCTGCACGAGGTGGTGAAGCTGGACGTGCAGGCGCTGCGCTGCGGGCcgtgcgccgcgccgctgcccgcctgGCCCGCCGCGCTGGCGCACCTGCGCGCGCACGGCCTGCAGCTGGACGAGGTGTCCACGCGAGCCATCCCGTACGTGCTGTCCCCCGCGCCCGCGTGCGCGCTGTGCCGCCGCGCCTTCCCCAGCTTCCACCACCTGGACGGCCACATGAACTCCCACTACAGCTCCTACGTGTGCCAGCAGTGCGGCGACACCTTCCTCTCCGCCATGCGGCTCGGCAAGCACGAGCAGGTGCACCGCGTGGGCCGGCACCCGTGCGGCGTGTGCGGCAAGGAGTTCACCCTTGAAAAGTATAGGAAAAGGCACGTCGAGCAGGTCCACATGCAGGAGAAGAGCTTCAAGTGCGTGTACTGCGCGGAGAGGTTCCTGGGCGGCCTGGAGAGGCACCGGCACGCCGTGCAGGCAcacgggcagcgcgtgccggacaccacgtgcgagcgctgcggccgccgcttccgctaccgccggtactacctcgcgcacatgcggcgccggcacccgctcgacacgcccgcctga
- Protein Sequence
- MICEWCAERLRGALEFRREVLACEQLRQEHLASAAGQKMDIIKSEAYDNECSAQPDHLEQQSEGSDGPDGQFADVQYLELDEDYISEDEGEMDESLLHGAKESLKGTTDFEEEYPELERPEPEKLKRRARGRAEGDDESNSSRAKRGVVRGARGARGWVYKQYTRAELAAAVRGVRRGELSRAQACRRYRVPRKTLHAKLLAAGTHSGARGWVYKQYTRAELAAAVRGVRRGELSRAQACRRYRVPRKTLHAKLLAAGTHSGARGWVYKQYTRAELAAAVRGVRRGELSRAQACRRYRVPRKTLHAKLLAAGTHSGARGWVYKQYTRAELAAAVRGVRRGELSRAQACRRYRYTRAELAAAVRGVRRGELSRAQACRRYRVPRKTLHAKLLAAADAEDAAKQVEGVEEAGGKGGAERHARLVRELRQLLEHTNAVPFKTRAGRYFCAYCSTAGPCFEEPEELRAHTLAAHAAERSRGLELALRPAWLHEVVKLDVQALRCGPCAAPLPAWPAALAHLRAHGLQLDEVSTRAIPYVLSPAPACALCRRAFPSFHHLDGHMNSHYSSYVCQQCGDTFLSAMRLGKHEQVHRVGRHPCGVCGKEFTLEKYRKRHVEQVHMQEKSFKCVYCAERFLGGLERHRHAVQAHGQRVPDTTCERCGRRFRYRRYYLAHMRRRHPLDTPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -