Csas002909.1
Basic Information
- Insect
- Carposina sasakii
- Gene Symbol
- -
- Assembly
- GCA_014607495.2
- Location
- CP053176.1:3127921-3165349[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 6 4.7e+02 2.2 0.2 2 23 524 545 523 545 0.95 2 13 0.0073 0.57 11.4 0.0 1 23 555 578 555 578 0.96 3 13 0.068 5.3 8.3 2.0 1 20 704 723 704 725 0.94 4 13 0.046 3.6 8.8 4.2 2 23 786 807 785 807 0.95 5 13 0.00038 0.029 15.4 1.5 2 23 849 872 848 872 0.96 6 13 0.081 6.3 8.1 0.2 1 23 878 900 878 900 0.93 7 13 0.0025 0.2 12.8 3.3 1 23 906 928 906 928 0.98 8 13 1.6 1.2e+02 4.0 0.1 1 23 1037 1059 1037 1059 0.96 9 13 2.4 1.9e+02 3.5 7.2 1 23 1066 1088 1066 1088 0.95 10 13 0.0016 0.13 13.4 1.8 1 23 1127 1150 1127 1150 0.95 11 13 0.0011 0.084 14.0 1.8 1 23 1157 1180 1157 1180 0.97 12 13 0.0037 0.29 12.3 0.2 2 23 1202 1224 1201 1224 0.96 13 13 0.00091 0.071 14.2 1.3 3 23 1288 1309 1287 1309 0.96
Sequence Information
- Coding Sequence
- ATGTGCCAGTTGCGTGCCAATAAAGTTGTGAATTTTGATAAATTATCGATATTTGCAATGGCGGATATACCAATACCAACGTCTCCAGTGGTTGTCTGCGTGGAGAATTCTGCTGGTGAGGAGGTATCCTTGACGGTGGAGCCTGATGATGACTTCCACGGGTTTCTGGATAAGGCCAAATTAATCCTAGGCTACGATCTAGACATAAACTCAATAACAAGAAACCAAGCAGTGTCTCTAGAGGACAACATTTACCAATTCCTCATCAGTTCTGAACACAATAGATCCCATTCCTCTCTTTGCACTCAGAATTATGATAAAATATTTGGTCAAAATAATAATTTGAATGATCAGGAATATGTCCTTGATGATGGTACTCAAATAAAAGCCTCACAAATACATTTTGATAATGATGATATGCAAGTCGATTTTACTGTTGATAAAATACCCTTTGTCAAGTATATTGACGATGGTGTGGATGATAATGATGATGATATCTCCATTGGTGATGTTAGACAATATAATATAGTCGACAGTCCTGTTTCACGATGGTCCAGTAAAAATTCCAGTCCGAAACGTAGTTTTATTAACACGTTGCCTTTTAAACTTGTTTGCAATAACGCATCGGCTTTCGAATCACAATTCATGAAGTTTGTAGAATCGAGCACCATTAAACCTATAACAGTTGCAGCGAAACCTAAATCGCCTAAAACTGTAGTTAAGGATGTACCTAAACCATATGAAGAGCTTAAAGCGAAAAGAACTGATGATTTTACAACTTATACGCGCGATGAAATACTTAACATGTTCAAAGATTCGCCGGTAACTTTATCGTATGAGACGAATAGAAGCCACACTGAAAAGCGTAGACATGCCCGCAAAAGTGATCCGTCCAAACTGGTACATAAGAATTGGAATGCCAGATCTATATCTTACGTGGACGTTGATGGCGTTATAATAGGTGGCACGGAAAACCAGAATTGCTGCATATGCGGTAAGTTCGTTGATAGCGTCGAAAAGATGTATCTATTCGATAACGAGGATCAAAGACTGCATAGATCATCGCCGCAAAAGAAAACATCGAAGCAACTTAAGGTGATTTGCGATGTGTGTCTCACGAGCAATTTTAGACCAGGTCGATTGAAAAGTCCAAATCAATCTCTGAATTCTGATGAATATTTAGTTATTAGAAACAACCAGCAGTACATATTCCAGAAAATAAATAATTTAGAACTTAATACTAATTTTGGTAAAGAAAATAAGGCGTTTAAAGATAACCTACAGTCGGATATAGTTAAAAACGCTAAAGCGAAAGAAAAAGTTGAATTTGTAAAAGTTGAGATAGGATCGGATGGTGAAATAGTAACTAAACCAATAGAGAATGAGTTAAGGTCGCCTGATGATGTTGTGATAGTGAAAGATGAAAATAAAGATAGTTCAAGCGATATAGAAATTATAGAAACAGATAATTTGGATGATAACATAATTGATAATTTGGAAAATGCAGATGAACAAGTGAAAGAGTTTTTGGGAAAATATCAGCATAATAATGCGCAAATTACTGAATTGAAATGCAGATTTTGCGAGAATATTTTTGAGGATTTGACCAAAGTGATGGACCATGTCGAAATGCATAAGCACTATTTGGAAGATGGGGAAGTGTTTCCATGTCCGTTGTGTGATTACGGATACGCCAATGTTAAATGGCTAAAAGGTCATTTGAGAGCAGCTCATGAACACGTCAAAAACGATGGAAAAAACACTACAGAGGATACTAAATTTCATGCAGGCGGCGATGGTGACAAAAAAAACGTCAACGAGACGTCTCCTGTAGCTAAAAGGACCAGAAGTGCAGCTAAAAAAAGCGACGATGAAAAACCAAAAGACAATTCGGAGTCCCCTGTCGGCACTCACAACTTGGAAACTAAAATTGAACAAATTGACGGTGAGCCAATCACCCTGAAGACAGAGGTGAAGCAAGAAGCGATAGAGTCCAGCGATGATGAGATATGGATAGTGCAGACAGCTGATGATGAGACGTCGGAACAACTGAAGAAGTTGCTTAACTCTGATAAGGAAAATGAAAAATCCAGCTCGTACAGAAAGAAACACAAGTGTTTTAGTTGCAGTCGTATATTTGCAACAGCGGACGCGTTGACCACACACAAATGCCTGCGTCGGCGCGTGCGCAAGCCTAAAGGGGATTTCGACACCATCATTATACCGAGTGAAGAAGACTTTATAAAGAGAGCACAAGGTCGCCCGAGACAAACTGATACGGATTATGACGATATGCTAGTTGAGAAATCTCGACGGAAACGTAAGGGTGAACCATCATCGGATCCTCAAATACTGACCTGCCACAACTGTAATGAATCGTTCACGTCTAAAGTCAGACTGAAATTCCACATGCAATTTCACGAGAAGACCAGCATGCTATCATCGGGCGTGTACCACTGTGCGTCATGTCCGGGCTCCTGCTTCGACACGGAGACGCAGCTGTTTGACCACGTGCACTTCCGACACCACAAGCAGACCCGCTGGCAGTGTCCGGTCGATAGCTGCGGGAAAACATTCTGTTTGAGAGCGACACTGACGAAGCACAGTCGCACGCACACAGACACGCGGCGCTACGTGTGTGTGACGTGCGGGAAACGGTTCCTCGACAAGCAGACGCTGGATGAACATGGCGTTACTCATTTACAGATAAAGCCCTTCCAATGCCACATCTGTTTGAAACAACTCACTCGACGCTCTCGACTGAGGATGCACTTGAGGGCTCATGAAGAAGAGCTTATTCCAACTCCGGTGTTGGCTTGTGCGGTGTGCCGTCGTGCTTTCCCTGACTCTCTTGCGGCGCAAGAGCACGCAAACAAATCGGTAGCTTGCATCCAAGAATATGCAGATCAGGTTAAGGAGGAAAAGGAACAGCAAGTCCAATTGTCGCCCACCAGTGGGATTGTTAGTCATACTGTCCATGTCATTGAATTCGCAAGTCGCCCGGCGGCCATCCAACGCGAGATGTCGCCTCGCAGCGCCGCGCCACATTTACGTCGATTGGACGATACCGCACGAAGCATTATACGAGTCGTGCAGATTGAGAAGGCTTTCCGATGCGAGTTTTGCGAAGATGTGTTTTATCTGGAAGACCCGTTGAACAGCCACCGTGCGGTACACAAGGGAGTGAAAAACCCTTTCACCTGCCATATTTGTAAAGTCAGCTTCGCTACTTATTCTAGATGCACAACGCACAAAACAACGCACGGTTTCTACAAGCGTTCCCTAGACGACGCGATGAAGAGCGCTGCTACCGACGCTAAAGCGGGTCCCTCCGCTACCGGTATATTGGGGTACGGCGGCTTTCCTGTCGCCAAACATTTCTTGTGCGAGGACTGTGGCAGGTCATATCTCCATTGGACGTACCTTCAAGTACATCGACGCATGAAGCACGCAAACGAAAATTACATCTACAAATGTAACCACTGCGATCTTACTTTCCCTAACAGTTGGAGCATAGCATATCATAGGAAGAAAGTGCACGGAAAGACCGGCCAAGACGATGTGAATGGTACCACGAAAATACTTAAACAAGATCATAAGATACCTTGTAGGGATTGCAATGAAGTGCTTCCAGACAAAACTGCACTCTATAAACATAGGAGGAAAGAACATAGTGATGTGCCCGTTAAGTCCAATGGCCGGAAAGAAGGTTTGTTCTGGTGCCATACATGTAACAAGCAGCACACAGTTAGACTGGATGTTCAGAAAAAACAGACAGCGTGCGCCCAGTGCGGCGATAACCTTACCACAGAGCATCCTAACACTCTAGGTCGCCCGCGCACCGCACCTCGCGATTGGCTTTGCTCGCGCTGCCCGAAACGGTTTCGCATCAGATCCGATCTGAAGGCTCATCTGAAACTCAAGCATCCCATGTATTTGACGGTTATAGAGATACAAGGCCTAAACCCCAGTTTGGAAGAGGTGATTGAGTGCTTGAATGTTAACAAGATATCAAGGGAGAACGTCATTGAGATTAACAAGATGTCGTTTGCAGAGGGCACGACCAGTATAATACCAAACAGCGCGCGAGCATTGGCCATGTTGTCATCAGTACCTAAGACTCCAGTGCCCGGGGTTAAGCTAACCACGCCGCAGCCGAAGCCAGAGGAGTTCCAGCCACTAGTGTTTTCTCGCTCGCACAAGCCTAACATCTTGCAGCGCGGAGAGGACAGACAGAGTGACCTGTCTGTCACTGAGATTTCCGACGTGAACCTACAAATGTTGCTACAAAATGGAGTGCTTGTGAACGGAAATCAGATGGTGCAGCTACAACTAGACGATCCCATCCTTATGGAGTAG
- Protein Sequence
- MCQLRANKVVNFDKLSIFAMADIPIPTSPVVVCVENSAGEEVSLTVEPDDDFHGFLDKAKLILGYDLDINSITRNQAVSLEDNIYQFLISSEHNRSHSSLCTQNYDKIFGQNNNLNDQEYVLDDGTQIKASQIHFDNDDMQVDFTVDKIPFVKYIDDGVDDNDDDISIGDVRQYNIVDSPVSRWSSKNSSPKRSFINTLPFKLVCNNASAFESQFMKFVESSTIKPITVAAKPKSPKTVVKDVPKPYEELKAKRTDDFTTYTRDEILNMFKDSPVTLSYETNRSHTEKRRHARKSDPSKLVHKNWNARSISYVDVDGVIIGGTENQNCCICGKFVDSVEKMYLFDNEDQRLHRSSPQKKTSKQLKVICDVCLTSNFRPGRLKSPNQSLNSDEYLVIRNNQQYIFQKINNLELNTNFGKENKAFKDNLQSDIVKNAKAKEKVEFVKVEIGSDGEIVTKPIENELRSPDDVVIVKDENKDSSSDIEIIETDNLDDNIIDNLENADEQVKEFLGKYQHNNAQITELKCRFCENIFEDLTKVMDHVEMHKHYLEDGEVFPCPLCDYGYANVKWLKGHLRAAHEHVKNDGKNTTEDTKFHAGGDGDKKNVNETSPVAKRTRSAAKKSDDEKPKDNSESPVGTHNLETKIEQIDGEPITLKTEVKQEAIESSDDEIWIVQTADDETSEQLKKLLNSDKENEKSSSYRKKHKCFSCSRIFATADALTTHKCLRRRVRKPKGDFDTIIIPSEEDFIKRAQGRPRQTDTDYDDMLVEKSRRKRKGEPSSDPQILTCHNCNESFTSKVRLKFHMQFHEKTSMLSSGVYHCASCPGSCFDTETQLFDHVHFRHHKQTRWQCPVDSCGKTFCLRATLTKHSRTHTDTRRYVCVTCGKRFLDKQTLDEHGVTHLQIKPFQCHICLKQLTRRSRLRMHLRAHEEELIPTPVLACAVCRRAFPDSLAAQEHANKSVACIQEYADQVKEEKEQQVQLSPTSGIVSHTVHVIEFASRPAAIQREMSPRSAAPHLRRLDDTARSIIRVVQIEKAFRCEFCEDVFYLEDPLNSHRAVHKGVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRSLDDAMKSAATDAKAGPSATGILGYGGFPVAKHFLCEDCGRSYLHWTYLQVHRRMKHANENYIYKCNHCDLTFPNSWSIAYHRKKVHGKTGQDDVNGTTKILKQDHKIPCRDCNEVLPDKTALYKHRRKEHSDVPVKSNGRKEGLFWCHTCNKQHTVRLDVQKKQTACAQCGDNLTTEHPNTLGRPRTAPRDWLCSRCPKRFRIRSDLKAHLKLKHPMYLTVIEIQGLNPSLEEVIECLNVNKISRENVIEINKMSFAEGTTSIIPNSARALAMLSSVPKTPVPGVKLTTPQPKPEEFQPLVFSRSHKPNILQRGEDRQSDLSVTEISDVNLQMLLQNGVLVNGNQMVQLQLDDPILME
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -