Csas002401.1
Basic Information
- Insect
- Carposina sasakii
- Gene Symbol
- -
- Assembly
- GCA_014607495.2
- Location
- CP053177.1:5577046-5588356[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.003 0.23 12.6 2.6 1 23 115 137 115 137 0.99 2 11 0.00011 0.0086 17.1 2.1 1 23 144 167 144 167 0.91 3 11 0.19 15 6.9 0.4 1 23 171 193 171 193 0.96 4 11 0.00084 0.065 14.3 1.0 1 23 198 221 198 221 0.97 5 11 0.045 3.5 8.9 1.1 1 23 225 248 225 248 0.93 6 11 0.0082 0.64 11.2 0.2 3 20 262 279 261 281 0.95 7 11 0.052 4.1 8.7 3.3 3 23 313 334 312 334 0.96 8 11 0.0045 0.35 12.0 0.1 2 19 350 367 349 371 0.93 9 11 0.37 29 6.0 2.1 1 19 377 395 377 400 0.84 10 11 6.8e-05 0.0053 17.8 1.7 1 23 407 430 407 430 0.95 11 11 0.00018 0.014 16.4 2.6 1 21 436 456 436 459 0.95
Sequence Information
- Coding Sequence
- ATGGAAGATAAAAATAAAAATGAATCTTTCACTAAAATGAAAGATGAATTTAACAATGATGATGATGATTTTGTTGACTTTGATGGTGACAATGCACTACTTATTGTAAATATACCTGAAAATCATGATTTTATAGAGAGCACAAGAGAAGAGAAGAAAAAGGCAGTAAAAAAAAAGTCAGGTGGCAAAAAAGAACCAAAGATTCCAAAACCTACAGGTCGAATGGCATCTAGTGCAATATTAGAAGAATTAAACAGTTTTTCAGTTAGCATAATGAGTTTTGAAGAGCAAATCGCTGAAATTCAGGCGAGACAAGAGACTAGTGAATATATTAATGCCTTATTTAAGTGTAACCTTTGCTTTAGAGGATTCAAAATTAAGGAAACTTATGACAATCATATGCAGAGGCATTCTGATGTGTGTGGTGAATTCGAATGCCCCGTCTGTCACCTACGCTTCGACACGCAGAGACATTTGCGTGCTCACGGCAGTAACATGCACAAGCAGAGATTCAGCTGTAAGGAGTGTGACTTTGTTAGTGTATTCCGACGACTAGCGATTTTACACGCTCGAAAACATAAGGGAGTTCGCTATAAATGTTCAAAATGTGATGCTGTGTTCAGCTCACTAACGACAAAGTTAAACCACGTCCGTATAAAACACCCGTCGGACTATGTCTGCGAACAATGCGGGTATTCGTTCTTAGGGGAGAAAGGGGTGACTCATCACAAGAGGAAGGTGCACAGACTTAATATGAAAGAGATACCAGAAGATGGTCCGTTCTGCGAACAGTGTAACATTTGCTTTGTCTCCGAGGAAGCTTTATCAAAACATCTAGGTGTATCTCCAAAACATACTACTCATAGCTCATACAACCAGAAACAACATAAATATGCATACAAAAAACGAATACCTATCCCATGGGTAAATAGAGCGTGTGAACATTGCGGCGAAGAACTAACATCATCACGAATGTACTATAGACACTTGCATAAAAAGCACAACTTAACGTTCGATCGAAAGCATAATTTAAAAAAGTATTATGTCATGTGCGAATCGTGCGGGAAGCAGTTTCCGTCCTCAACAGCCTTACGGGACCATGCTTGGGTCCACACAGGAGAGAAAGCTTATAAATGCGAGAAATGTGGAAAACTATACGCATGTAAAATAGCGTTGAAAACCCATGACATGAAATCACATTTGGGCATAGTGTCGATGTTTCCTTGCAAAATATGTGACAGACAATTCAGTCAGATCGCAAATCGGAATCGGCATATGAAATTCTTCCACACGGATTACAGACCCTTCAAATGCGAGATCTGTGAAAAAACTTACAAGAGTAGAACTGATCTACAGTTGCACGTCAAATGTGTGCATTTAAACCATCCATGGCCGAAACGATCCAGGGGAAAAGAACAACGGACTGTCAACTCTTAG
- Protein Sequence
- MEDKNKNESFTKMKDEFNNDDDDFVDFDGDNALLIVNIPENHDFIESTREEKKKAVKKKSGGKKEPKIPKPTGRMASSAILEELNSFSVSIMSFEEQIAEIQARQETSEYINALFKCNLCFRGFKIKETYDNHMQRHSDVCGEFECPVCHLRFDTQRHLRAHGSNMHKQRFSCKECDFVSVFRRLAILHARKHKGVRYKCSKCDAVFSSLTTKLNHVRIKHPSDYVCEQCGYSFLGEKGVTHHKRKVHRLNMKEIPEDGPFCEQCNICFVSEEALSKHLGVSPKHTTHSSYNQKQHKYAYKKRIPIPWVNRACEHCGEELTSSRMYYRHLHKKHNLTFDRKHNLKKYYVMCESCGKQFPSSTALRDHAWVHTGEKAYKCEKCGKLYACKIALKTHDMKSHLGIVSMFPCKICDRQFSQIANRNRHMKFFHTDYRPFKCEICEKTYKSRTDLQLHVKCVHLNHPWPKRSRGKEQRTVNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -