Csas004922.1
Basic Information
- Insect
- Carposina sasakii
- Gene Symbol
- -
- Assembly
- GCA_014607495.2
- Location
- CP053172.1:5853475-5854923[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0017 0.13 13.4 1.8 1 23 137 159 137 159 0.97 2 10 0.63 49 5.3 0.0 2 23 186 208 185 208 0.94 3 10 0.00034 0.027 15.6 1.0 2 23 231 252 230 252 0.97 4 10 0.0001 0.0081 17.2 0.6 1 23 256 278 256 278 0.98 5 10 0.073 5.6 8.2 2.2 1 23 283 306 283 306 0.94 6 10 0.23 18 6.6 1.8 2 23 314 336 313 336 0.90 7 10 1.8e-05 0.0014 19.6 1.2 2 23 344 366 343 366 0.96 8 10 6.6e-05 0.0051 17.8 1.8 1 23 372 394 372 394 0.97 9 10 1.5e-05 0.0012 19.8 0.7 1 23 400 422 400 422 0.99 10 10 6.5e-05 0.005 17.8 4.8 1 23 428 451 428 451 0.98
Sequence Information
- Coding Sequence
- ATGGTATATCCAAGATTGCAGGATGACGAAGATCTCACTACTTATAGCATAGCTGTGCTTCGTGTCCGTCACAAGGACCGGGCGAAAAAAGATATTAAAGAGAGCATTTACGCAAAAGAGCTCAGGGACTGGAGTGTAACGGTCGTAAAGAGCGAGTTCATTGAAATCAAAGACGAAATAGACGATCCATTCGATATTGAACCGAAACGAAAGAAGACGCGCGGAGAATCGAGTAGTAAAAAAGATATGAAAGACTCCAGCAAACTGTTAAGAACTCGTAAAATCGCGAACGCGACAAACATAACGCTGTTCGACAATGTGACGGAGTTAGAGAAGCATAGACATAACATTAAAGTGATTCTGGAGTCTAGCAACGCGACGCCGATTCGATGTCGCGGCGGCATTGGATACGCGTGTTGTTTCTGCACAGAACAGTTCCCCGATGCGGCTGATCTGAAGGCTCACACCCACACACATGAGGATAAACTCAAAAAGAACTTCATGAAGAAGAAAATGATGTACTCCTTCTTAGTCAAACTGGATATCACGGCGCTCGTCTGCAAGATGTGCCAGCTACCTATCGATACATACGACGGTCTGGTTGATCACCTAACGAAAGCGCACCAAAAAAAGTTCTTCACAGACATCAAAAATCATATAATACCCTTCAAATTTACAGATGACGTGCTTCGGTGCACGCTCTGTCCGAACGTTTTCAACAAATTTAAGATGCTACAAGAGCATATGAATACCCATTACAGGAACTACGTATGTACGGTGTGTGATGCAGGTTTCGTAAATAGGCACATGCTGCAAAGCCACACGGAGAGTCACAAGCTCGGCTCGTTCGCTTGCTCGTTCTGCGAAAAAGTCTTCGACACGTTCCGCAAGAAGAAATCGCACGAGAAATCCGTGCACGTACACGCGAATTTCCTCAACAAATGCGGCTATTGCAAGCAAAAGTTTAAAGACTATAGGAAGAAAGACGAACATCTGATAAAAGTGCACGGCGTTAAGGCAATGTCGTTAAAATGCCAGGCGTGTGATAAAGTGTTCGATAACCGTTCCTCACTGACGACTCATACGAAACGAGACCATTTATTGGAACGACGACACAAGTGTCCCGAATGTGATATGAAGTTCTTCAGCTCTGGAGAACTAAAGGAACATAAGATCAAACATTCTGGACAGAAGGAATATCGATGCGAGGTGTGTTTAAAAGCGTACGGGCGAAGGAAGACGTTGCGCGAGCATATGAGGATCCATGAGGATGACCGACGCTTTAAGTGTGAACATTGCGGGTTGTCGTTCGTGCAAAAGTGTAGTTGGAGAGGACATATGCGCTCTAAGCATGGAGAAAACTTGTAG
- Protein Sequence
- MVYPRLQDDEDLTTYSIAVLRVRHKDRAKKDIKESIYAKELRDWSVTVVKSEFIEIKDEIDDPFDIEPKRKKTRGESSSKKDMKDSSKLLRTRKIANATNITLFDNVTELEKHRHNIKVILESSNATPIRCRGGIGYACCFCTEQFPDAADLKAHTHTHEDKLKKNFMKKKMMYSFLVKLDITALVCKMCQLPIDTYDGLVDHLTKAHQKKFFTDIKNHIIPFKFTDDVLRCTLCPNVFNKFKMLQEHMNTHYRNYVCTVCDAGFVNRHMLQSHTESHKLGSFACSFCEKVFDTFRKKKSHEKSVHVHANFLNKCGYCKQKFKDYRKKDEHLIKVHGVKAMSLKCQACDKVFDNRSSLTTHTKRDHLLERRHKCPECDMKFFSSGELKEHKIKHSGQKEYRCEVCLKAYGRRKTLREHMRIHEDDRRFKCEHCGLSFVQKCSWRGHMRSKHGENL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -