Csas015019.1
Basic Information
- Insect
- Carposina sasakii
- Gene Symbol
- -
- Assembly
- GCA_014607495.2
- Location
- CP053160.1:2808736-2821995[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 6.3 4.9e+02 2.1 0.2 3 23 119 139 117 139 0.94 2 17 1 78 4.6 0.1 2 23 143 165 142 165 0.91 3 17 5.9 4.6e+02 2.2 2.2 3 23 170 191 168 191 0.90 4 17 0.078 6 8.1 1.6 2 23 387 409 386 409 0.95 5 17 0.055 4.3 8.6 0.2 1 20 417 436 417 438 0.94 6 17 0.012 0.93 10.7 0.7 2 23 448 469 447 469 0.94 7 17 0.077 6 8.2 1.7 1 23 517 540 517 540 0.93 8 17 0.71 55 5.1 1.4 6 23 590 608 588 608 0.97 9 17 0.085 6.6 8.0 0.2 2 23 617 639 616 639 0.92 10 17 2.9 2.3e+02 3.2 0.5 1 23 644 667 644 667 0.86 11 17 4.9e-05 0.0038 18.2 1.5 1 23 673 695 673 695 0.97 12 17 2.6e-06 0.0002 22.2 1.2 1 23 702 724 702 724 0.97 13 17 5.8e-05 0.0045 18.0 1.4 1 23 729 751 729 751 0.96 14 17 4.7e-06 0.00037 21.4 0.3 1 23 757 779 757 779 0.98 15 17 7.6e-07 5.9e-05 23.9 1.2 1 23 785 807 785 807 0.98 16 17 0.00016 0.012 16.6 2.5 2 23 814 835 814 835 0.97 17 17 7.2e-05 0.0056 17.7 0.9 1 23 842 865 842 865 0.98
Sequence Information
- Coding Sequence
- ATGGTGTCCGATGATTCAGACGACGAACCGTTGTCAGTAATCGCCTTGGCTAAAAAGGTAAAGTCAGAGGAACCTATAGGTTTACCTCCAGACATTGAGGTAACTGAAGTATCAAGTAAGCGAAAGCGTAAGAATGCTAAGAATAAGAAAGCAAAGAATATCGACACGTCTTCAGAACTATCTATTAAATTACACAAACCATTGCCTGTAATAATAAAGCGCCCCAAAGATGTGTGGCTATATTTCAAAGATTTGAACCCAGTTGGACCTTACACTTGTTTATTGTGTACTGACTGGTTCCTAAAAAGGTCTCAAATGGTGCTACATTACATATTAAACCACAAGAAAGACTTCTGTGGCATATGTCGCTACTTTATTCCTGAAAGGGACCAATGGTGGTCTCATCAACAGTTCCATGCACCTTGGCCATGTTCCCAGTGTGTAGAGAGCTTTGAATCTGAGTATGTGTGGCGGCAACACTTCAGTAAAGCTCACAACCTAGTTCATTGTCGTTTGTGTCACTTTCGGGTGCCCGACAACGACCAGTACCTGACCCATCTAGTCCAAAAGCATGCTGTGACAAATGTAGCCAGTAAAGATCAGGTGTTTCCTTGGGACTTTGAGTTTCAAGGAAGCACTCATTTCACCTGCTTACTTTGTTCAAGATATCACAATCCCAATAACACTTTTTATAATCACTACATAGGATACCATCACCTTACATTGAAATGCTTAACAAATTTGGTGTCAGGAAAGGATGTGCCGTTTACGATCAGTGGTGCTGACTTAAGTTCAGATTTTGTGGAAAAACATTTGAAGGAGCACAAGAAAGTAGGGTATGTTCAGTTGGAAGTTGAAAGAATAGCAGGGCAGCAATCTGAGGATAAGGCCTACATTCCAATTGAGGATTTAATCAAAGAAGAAGTGTTGAGTGAACCAGAAGAGAAAGAAGGAGAAAGTAACTCTACACAAGTGGATCCCTCTTCAAAACCATACAGAGGCCATGAAGACTTTGATATGACTCTTACTGATATCTTCATTGTACAAAAATGTTACTACCACTATGTCACCCAAGTTCTAAATAGTATCAATTCAAATGTTGTCCCTGAAATGTCAGATATACACTATGATACTGCTAAACCAGAGAATTTTGAATGGGAATGCTCTATATGTAAAGCAAAGTTTGAGACTGTGCAGCATTTTGGTTCTCATATGACAAAGTTTCATGGAATTAAAGTAGTGCCTATATTCTCTTGTAGAGTATGTGCTACTACATTTGAAAACCAGACTGACCTTGATAATCATACTGTGAAAGAGCTCTGCGAGTTTGATGATTTGTGGATATGCCAGTTTTGTGACAGGGACTTCAGTGATAGGGAGATGACAAGGAAGCATTTAACCGAACACATGGATGTTTTGCAGTTTGACAACTGTTTTAGTCCACATTTAGGATTTAAATGCATGTACTGTCCAAACCTTTTTTGGAATGAGACAGACAGAGAGACTCACCAAGTGAGGGTACATTTGAACAAACACATAGACCAGTATTACAAATGTGAGCCCTGCTCTGAAGTGTTCAGTGACAAAGTTTGGTATATCCACCACTATTTCAACAAACATGAGGATATAAATGGCACAGAAACCCCCCATTTCCTGCTAAAGTGTCGCATCTGTGCCATAGTACAGCAGGATGTGGACAAGATGAGGGAGCACTTCTGTAACACGCATCCTGAAAGCAGGAAGCTGTTTTGTTCCTTACCGCCATGTTGTTACAAACCATTGAGTCACAGGAAGTCTCTGAAACTGCATGTCAAGACAATTCACGGGCAGGCCCGCGACCATAAAATAGTATGCACGATCTGCAGCAAAGAATTTCAAACATCCCAAGCCAGAGGTGCCCATATGAGTCAGATGCATGGCGCCGGACACTACAAGTGCAAGTTGTGTGATGATGTGTTACGTAGCGTGGACGAACGCAAGCTGCACTACCTGCTGCGGCACCCGGGGCAGCACCAGTTCCCGTGCGCGTCGTGCGGCAAGTCGTTCCGCTACAAGTCCTCGCTGTACCTGCACCGGCAGCAACACGCGGTCGTCAAGCAGAACTATGCGTGTGCGCACTGCGGGAAGGTGTTTACGAAAAAGGACTCGTACCGCGAGCACATACAAATCCACGCGGGCCCGCGCCACGCGTGCTCGTACTGCCCCATGCGCTTCGTACAACGTTCCAACATGCTGCGACACGAACGGATACACACGGGCGAGCGGCCCTACTCCTGCAGCCACTGCCCCAAGGCCTTCGCCGACAAGGGCGCCATGAAGGCACACGTCATGACGCATTCGTCGGAAGTCAGTTTTGTCTGTGTGTACTGCGGGCAGACGTTTGCGCAAAAATCGAAGCTGACGTATCATATCAGGCGGCACACAGGGGAAAATTTAGAGACCTGTTCGTTGTGTTCGAAGATATTTACTAGCGCGTGTTCTCTGCGGGAACATATGAAGATACATAACAACAAGAAGGATGCCTTCAAATGTCCCCTATGTGACCGCGGTTTCCAAGACGAGCGCTACATGCTGCGTCACTTACGCACGACGCACACGCGTGCGCCCGCGCTACCTTGCCCGCTGTGCGCCACATGA
- Protein Sequence
- MVSDDSDDEPLSVIALAKKVKSEEPIGLPPDIEVTEVSSKRKRKNAKNKKAKNIDTSSELSIKLHKPLPVIIKRPKDVWLYFKDLNPVGPYTCLLCTDWFLKRSQMVLHYILNHKKDFCGICRYFIPERDQWWSHQQFHAPWPCSQCVESFESEYVWRQHFSKAHNLVHCRLCHFRVPDNDQYLTHLVQKHAVTNVASKDQVFPWDFEFQGSTHFTCLLCSRYHNPNNTFYNHYIGYHHLTLKCLTNLVSGKDVPFTISGADLSSDFVEKHLKEHKKVGYVQLEVERIAGQQSEDKAYIPIEDLIKEEVLSEPEEKEGESNSTQVDPSSKPYRGHEDFDMTLTDIFIVQKCYYHYVTQVLNSINSNVVPEMSDIHYDTAKPENFEWECSICKAKFETVQHFGSHMTKFHGIKVVPIFSCRVCATTFENQTDLDNHTVKELCEFDDLWICQFCDRDFSDREMTRKHLTEHMDVLQFDNCFSPHLGFKCMYCPNLFWNETDRETHQVRVHLNKHIDQYYKCEPCSEVFSDKVWYIHHYFNKHEDINGTETPHFLLKCRICAIVQQDVDKMREHFCNTHPESRKLFCSLPPCCYKPLSHRKSLKLHVKTIHGQARDHKIVCTICSKEFQTSQARGAHMSQMHGAGHYKCKLCDDVLRSVDERKLHYLLRHPGQHQFPCASCGKSFRYKSSLYLHRQQHAVVKQNYACAHCGKVFTKKDSYREHIQIHAGPRHACSYCPMRFVQRSNMLRHERIHTGERPYSCSHCPKAFADKGAMKAHVMTHSSEVSFVCVYCGQTFAQKSKLTYHIRRHTGENLETCSLCSKIFTSACSLREHMKIHNNKKDAFKCPLCDRGFQDERYMLRHLRTTHTRAPALPCPLCAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -