Csas024754.1
Basic Information
- Insect
- Carposina sasakii
- Gene Symbol
- Zfa
- Assembly
- GCA_014607495.2
- Location
- CP053173.1:1708665-1722281[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.003 0.23 12.6 0.9 1 23 243 265 243 265 0.98 2 11 0.018 1.4 10.2 1.0 1 23 272 294 272 294 0.98 3 11 5.7 4.4e+02 2.3 0.6 1 23 298 320 298 321 0.85 4 11 0.0003 0.023 15.7 4.6 1 23 328 351 328 351 0.94 5 11 0.00014 0.011 16.8 0.2 2 23 358 380 357 380 0.92 6 11 2.3e-05 0.0018 19.2 0.2 1 23 391 413 391 413 0.96 7 11 3.4e-05 0.0027 18.7 0.3 1 22 419 440 419 444 0.94 8 11 5.4e-05 0.0042 18.1 0.6 3 23 454 475 453 475 0.95 9 11 8.1e-05 0.0063 17.5 0.9 1 23 481 504 481 504 0.97 10 11 0.088 6.9 8.0 4.8 1 23 513 535 513 535 0.96 11 11 0.00017 0.013 16.5 0.4 1 23 541 564 541 564 0.96
Sequence Information
- Coding Sequence
- ATGGAAATCTTGGAAGGCCAAGAGATATCAACAAAAATTGATTGTTGTTTTGGCTGCCTATGCAAGAAAAATGAACTTACACTCAGTTCCTACAAGTTTCAGAACGAGGGGCTGAAAAAAATTCTTCAGCTGGATTCTCTTAATTTATGCTTTTTGTGTATGCGTTTGGCTCAAAGAACAGAAGCATTTATTCAAGCAGTACAAAGCAATCAGATGTTGTTTGTAAATTTTGAGACGATCTTAAGGCCTACATTCCGTAAAATGAACTCTCAACCCCATCCAATTGTCAACCTTATATGTAATGACATAGAGACTGTAGACCTCGGACCAGAAAGTGAAATAAAAGCTCTAGAAAAGTTCTCTGTAACCTTCCAGTGTCCTAATAATGTTAAAACAGAGGTTAAAAATGAGCTGAAAGAAGAAACAGAGATTAGTACATGTTTAGAGGGAGAGTTTGTTAATGATTTCGATGATACATTTATAAAAGCTGAAAATGATGATGAAGATGATTTCCCACTGAAAGAGTTATTAAAACAGGCGCTAGAAGTGGAGAAAATGCCTCGAAAGATCAAAAAGAAGAAGACTGTTAGTAAGGTGAAGAAGAAAAAGACTGAGGTCATTGAAACTGAAACAATAAATCCAATCGAAACAATAGTAATAACTCTAGAAGATTGTTTAAGAGAGAGAGAAAAGATGGCGTCTGAGACAAAATACCTCGACTCACCATTCAAGTGCGAGTTCTGTATAAAAGCATTTGTTATAAAAGACAGTTATGAGAAACATATGGAAAAACATAATGCTGAAAGTGGTGAATTTGAATGTGATATCTGCAAATTACGGACTGACTCGGAAGAAAAGTTATCTAGTCATAGAAAATATCATTTTATTCGTTACCGCTGCGGGTCATGCGGCCTGACGCGTGTCGGTCGCGTGAGTGTGAAGGAACACTTCTCCGCACATCACGCGCCGGCGCCGCGCGCGCATGTCTGTCTACACTGCGAGAAGACATTCAAGCGTGAAGTATCTCTAAAGAAGCACGTTTTATACAAACACCGCCATCGCGAACGAGTTACGTGTCCCGTTTGTAAGAAGTCCTACGCTACTAAAGAAGTACTCAAAACGCATATGGTGGAACGCCACAATCCCGACCGTAACGGCGTGACCAAGAAGTTTGTCTGCACGGAATGCGGGATGGCTTTCCGAGCCCCCTCGCAGCTTCGCAACCACGCATACAAGCACGCCACGTCACGGGATTACTACTGCGTCGAGTGCGACAAAACATTCAAGTCGGACCAGGCGCTGAAAAACCATTTAAAAACGGCCGTACCTCATATAGACTGTAACGATTTACCACGACCTTGTCTACTCTGCGACAAGCGATTCGCGAGTCGCCGCGATTTAGAGCGACACACGAATCGCATTCATCTCAAGGTCAAACCTTACCAGTGCGATAAATGTGAAAAGGCGTACATAAACTCGTGGACGTTGAACGAACACAAACGCTACACACACGACGGAGCTAAACGACCGCTTACACACGCTTGCACGGTTTGCAGCCGGGTGTTCGATCGAAAACAGATTCTGAAATGCCACATGCGCACGCACACGGGCGAGCGTCCATACCAATGTCAAACGTGTCCGGCCAAGTTCAGTCAAACCAGCGCTCTGAGCACACATGTCAAACTTATACACATGAAGCTCACGAGGGACGGCCGGCCTAAGGGAATACTTAAGTATTGA
- Protein Sequence
- MEILEGQEISTKIDCCFGCLCKKNELTLSSYKFQNEGLKKILQLDSLNLCFLCMRLAQRTEAFIQAVQSNQMLFVNFETILRPTFRKMNSQPHPIVNLICNDIETVDLGPESEIKALEKFSVTFQCPNNVKTEVKNELKEETEISTCLEGEFVNDFDDTFIKAENDDEDDFPLKELLKQALEVEKMPRKIKKKKTVSKVKKKKTEVIETETINPIETIVITLEDCLREREKMASETKYLDSPFKCEFCIKAFVIKDSYEKHMEKHNAESGEFECDICKLRTDSEEKLSSHRKYHFIRYRCGSCGLTRVGRVSVKEHFSAHHAPAPRAHVCLHCEKTFKREVSLKKHVLYKHRHRERVTCPVCKKSYATKEVLKTHMVERHNPDRNGVTKKFVCTECGMAFRAPSQLRNHAYKHATSRDYYCVECDKTFKSDQALKNHLKTAVPHIDCNDLPRPCLLCDKRFASRRDLERHTNRIHLKVKPYQCDKCEKAYINSWTLNEHKRYTHDGAKRPLTHACTVCSRVFDRKQILKCHMRTHTGERPYQCQTCPAKFSQTSALSTHVKLIHMKLTRDGRPKGILKY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -