Csas021560.1
Basic Information
- Insect
- Carposina sasakii
- Gene Symbol
- ZNF462
- Assembly
- GCA_014607495.2
- Location
- CP053175.1:765390-769122[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.3e-05 0.00098 20.1 2.5 1 23 182 204 182 204 0.98 2 17 0.00019 0.015 16.3 0.1 1 23 234 257 234 257 0.94 3 17 0.46 36 5.7 0.1 2 23 320 342 319 342 0.94 4 17 0.0024 0.18 12.9 0.5 1 23 348 371 348 371 0.92 5 17 0.18 14 7.0 0.9 2 14 376 388 375 394 0.85 6 17 0.19 15 6.9 3.9 1 23 404 427 404 427 0.94 7 17 8.4e-05 0.0065 17.5 5.4 1 23 432 454 432 454 0.99 8 17 0.031 2.4 9.4 0.3 3 23 467 488 466 488 0.93 9 17 0.00033 0.026 15.6 4.2 1 23 492 514 492 514 0.99 10 17 0.014 1.1 10.5 1.0 3 23 523 542 521 542 0.96 11 17 1.6e-06 0.00012 22.9 0.6 1 23 555 577 555 577 0.98 12 17 0.00041 0.032 15.3 0.1 2 23 582 602 581 602 0.96 13 17 0.011 0.82 10.9 1.1 1 23 616 639 616 639 0.98 14 17 0.0017 0.13 13.4 0.4 1 23 645 667 645 667 0.98 15 17 0.0067 0.52 11.5 1.8 2 23 676 697 675 697 0.97 16 17 0.00081 0.063 14.4 0.5 1 23 703 726 703 726 0.97 17 17 0.019 1.5 10.1 1.7 3 23 733 754 732 754 0.96
Sequence Information
- Coding Sequence
- ATGGCTCTAGACATGCTCAAAGAACCAATACCACATGCTGGGGCCAGCGATGCCCAATCCAAAATGGATGGGATAGAACTTAAGCTTCGGAATGTGCTTTTCGAACCAAAGATTTGCTCCTTCTGTTTTCAAGTATCACAAGATCTCTTTACTTTGGAAAGAAAGTTTGGTATTATAATGGATAAGGAGAAACATACAAAGCCATTGAAAGATATTATTGATACTGTTCTCAGTTATCCTGGTTCGATAACAAACATCATGGCGAGCAAATACATCTGCGCAATGTGCACTGAAAAAGCAATTCAAGTGTACTCCTACATAGAGACAATGAAATATTCAGTATTATTAATGAACAGTTTTGTAAACGACTTGGTAATGAAAACTGATGCTATAGAGAGTCAGGTAAACCCTAAAGAGTATGACGATGAAAAACCCAATGTTTTTGTCATTCTAGAAAGTGATTTAAGCGGTCGGGAAAACATCGAGCTAACCGAAACAAATCTTAAAAAGGAACTGCACGAGGAAAGTCCACAGAAAGTGAAACACCAATGCAGTATTTGCGATAAAGAGTTCACGTCCAATGCCTTTTTGACTACACACTACAAAGTGCACAACAAAGTTAAATGCCAATTTTGCAATATTTATATACCGAAAGATGATATGACTGACCATATGAAACTTAATCATCCGAATACAGTATTTCCATGCAACATTTGCGGCGTGGCTTTCTATTCTGAAACGGAATTATTTCGCCATGCCAAAGAGACACATTCGACTGAACCCATAACGTTAGATACTGATGAGCTCCTATGTGTTTGTCTTGCAAAACTAAAGAAGGAAAAGGCTAAATATCACAAATGCTTCTACGGCTGTGGTGATTGCTTTACCGTGCCGTGCGTACATTATAAATACTTGCGTTCTTTCAGAGAACAGGTTTTAAATAAAGCTGCTAAAATCAAGTGTGTAGATTGCGATTTCTACTATAAAAAGAAAATTGAAATACTTGCACATGCCAATCGTATACATTTAAATCATCATCCTTACACTTGTGATGACTGCGGTACACAGTTCTTCACCAAGCAAGGCATTAAAACTCATATAGTGGAAACTCATTGGGAATTCCAAGTTTGCCAGTTTTGTGATAAGAGGTTTAGAGATAAAGCACTGTGCGCTGAACATGTAGACTTGTGTAAAGTGAACGAAAGAGCGCACAAGTGTAAAGAATGTGTTGCGTCATTCCATACTGAGAAAGCTTTGGAATATCATGTCAAATTTAAACATGCAGATGAACTGTTTCAGTGCAATAAGTGTAATAGAAAATTTATTTCGATTACGTGCTTACAACAGCATATGAAAACACATAAAAGTGTTCAAAGGTTAATGATTAGAAGCAGAGATTGTCCAATTTGCGACGAGAGATTTGACTGTAGAGATGCTTATAATAAGCACATTGAAGAGGTGCATAAGGACAATTACAAATGTAAGCTCTGTCCTAAGAGTTATAAGAGCCTATTATGCTTAAAATCTCATTTAAGACTGCATAAAGGCAAGCTGATAAAAGTGAACTGCCCGATTTGTTCTAAACTTTGCAGTTCATACATGTTACGGGCACATATAAAATCACATTCGCAATTGAAAGCCCGCGACGGAGCCCCTAGAATCTATTCATGTAAAATATGCAATAAAAGCTATCCGAACAAAGGTACGTTATCTGTGCACATCAGGAACCATGGCAAATGTGATCCATGTCCGTATTGCGGGAAAATAATCACTCCAAGCAATTATAAGAAGCATCTACTGAGACATACTAATCCTGAGCTGGCAGTGCCCCAGAAAAGAACGTTGTATCAGTGTGATTTGTGTACATACATAACCGCGTATGGGCATATGTTGGAAAAACATATGAATAAAGAGCACCTAAAGATCTATCCATACGCATGTGGTGTATGCGATAAGCGGTTTTTGAATAGGCCAATGATGAATTCGCATATGAAAATGCATGCAGACCAGTCAGAGAAGAAAGTGAAATGTCTGATGTGCGATATGATGTTTCATACAAACACATTAATGAAAATACATCTACGTTTGCATACGGGTGAGAAACCGTATGAATGTGATTTGTGTGAGGAGAAATTCTCAACGGCAAGTAGGGTTAAAGCTCACAAGCTTACAAAACATATGGAAAAAATGGCTCCATGTCCGTTATGTGACAAGAAATTCCATCTAATGTCCACTATGAGGTCTCATGTTAAAAAAGTGCATTGGAGAAAGAAGGATGAAAAGTTCGACCCGCGGAAAATTAAAGAGTTGACCAAAGATCAATATTATCTTTTTGAGGATTCTAGAAGGACTAAATTAAATGAAGAAGACTTTCATTTTGCGTGA
- Protein Sequence
- MALDMLKEPIPHAGASDAQSKMDGIELKLRNVLFEPKICSFCFQVSQDLFTLERKFGIIMDKEKHTKPLKDIIDTVLSYPGSITNIMASKYICAMCTEKAIQVYSYIETMKYSVLLMNSFVNDLVMKTDAIESQVNPKEYDDEKPNVFVILESDLSGRENIELTETNLKKELHEESPQKVKHQCSICDKEFTSNAFLTTHYKVHNKVKCQFCNIYIPKDDMTDHMKLNHPNTVFPCNICGVAFYSETELFRHAKETHSTEPITLDTDELLCVCLAKLKKEKAKYHKCFYGCGDCFTVPCVHYKYLRSFREQVLNKAAKIKCVDCDFYYKKKIEILAHANRIHLNHHPYTCDDCGTQFFTKQGIKTHIVETHWEFQVCQFCDKRFRDKALCAEHVDLCKVNERAHKCKECVASFHTEKALEYHVKFKHADELFQCNKCNRKFISITCLQQHMKTHKSVQRLMIRSRDCPICDERFDCRDAYNKHIEEVHKDNYKCKLCPKSYKSLLCLKSHLRLHKGKLIKVNCPICSKLCSSYMLRAHIKSHSQLKARDGAPRIYSCKICNKSYPNKGTLSVHIRNHGKCDPCPYCGKIITPSNYKKHLLRHTNPELAVPQKRTLYQCDLCTYITAYGHMLEKHMNKEHLKIYPYACGVCDKRFLNRPMMNSHMKMHADQSEKKVKCLMCDMMFHTNTLMKIHLRLHTGEKPYECDLCEEKFSTASRVKAHKLTKHMEKMAPCPLCDKKFHLMSTMRSHVKKVHWRKKDEKFDPRKIKELTKDQYYLFEDSRRTKLNEEDFHFA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00276712;
- 90% Identity
- iTF_00276712;
- 80% Identity
- -