Csas005583.1
Basic Information
- Insect
- Carposina sasakii
- Gene Symbol
- -
- Assembly
- GCA_014607495.2
- Location
- CP053172.1:7480996-7483345[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.8 1.4e+02 3.9 0.4 2 19 2 19 1 24 0.90 2 18 2 1.6e+02 3.7 0.5 2 23 49 71 48 71 0.92 3 18 0.0035 0.27 12.4 0.7 1 23 94 116 94 116 0.97 4 18 1.2e-05 0.00091 20.2 1.1 1 23 120 143 120 143 0.97 5 18 0.78 61 5.0 1.0 3 19 150 166 149 169 0.94 6 18 0.0065 0.51 11.5 1.0 3 23 178 199 176 199 0.91 7 18 0.04 3.1 9.0 0.5 1 23 206 229 206 229 0.95 8 18 0.0037 0.29 12.3 2.0 3 20 236 253 235 256 0.88 9 18 0.00021 0.016 16.2 0.3 2 20 264 282 263 285 0.94 10 18 0.85 66 4.9 0.0 2 23 351 373 350 373 0.92 11 18 0.007 0.55 11.4 1.6 1 20 396 415 396 418 0.95 12 18 0.0035 0.27 12.4 1.3 1 21 422 442 422 445 0.95 13 18 0.099 7.7 7.8 0.4 3 21 451 469 450 470 0.94 14 18 2.1 1.6e+02 3.6 0.5 1 21 477 497 474 500 0.85 15 18 0.0027 0.21 12.7 3.4 1 23 507 530 507 530 0.97 16 18 0.00028 0.022 15.8 1.3 2 23 536 557 535 557 0.96 17 18 1.1e-06 8.6e-05 23.4 1.3 1 20 563 582 563 585 0.95 18 18 3.6e-06 0.00028 21.8 2.9 1 23 591 613 591 614 0.96
Sequence Information
- Coding Sequence
- ATGGTTTGCGTTTACTGTTGCGAAGGGTACTCCGACCCTGCTCAGTTCAGGAAACACAATGTGGACGAGCATCTGACGTTCAATGTCGAAATGGCTTTCGCACACATACAAGATGGAGGCGTTAAAGCCGATTGCACAGACCTTCGGTGCCGGCTTTGCGATTTGCATTTAGAAAACCTATCCGACACCGCCAAACATTTATCCGAAATCCACAATAAACAGATCAATCATGACTACGATCTAGGCATACAACCGTTTAAGTTAGAAAGCGCGAACAAATTCTCCTGCGCCATTTGTAGCGAGAAATTTACGGCTCTACGCACGCTTAGCAGACATACGTTGTCGCATTTCGCCAACTACACGTGTGAGGCTTGCGGCAAATCGTACACCACGTACTCCTCACTACAGTATCACGTGAGAAACTCCCACGAAAGCGACGCGAGAATATGCCGCAAGTGTAAAGCTAGGTTCACCACATTAGCCGATTGGAAGGAACACTGCAAAGTGTCCAAGCAGTGCGGCCAACACCTGTGCAACGTTTGCGGGGAGCGTTTTTCCGCCTGGCATTTGAAACAGAACCACATGGAGGCGGTGCATGGAAAACCGAAACGCACGTACCCATGCCTAGAATGCAATGAGGTCTTCGAGAAGAGGGACGCTTGTAGGATACATTTCAGGATCGCGCACACGAGCGACCATGTTGCGTGCACGTGTTGCGGCCGAAAGTTTGACACCGAGACAAACCTGAAAAGGCACATGCCTATGCATACCGGAGAGAAATTTTTGATTCCTTGCAATCTTTGCTCCAAGTCTTTTGAAACTAAACGATTGCTGCGTGTCCACATGTGGGAGCACGATGCTTCGAAGAAAAAGAATAACACTGTGCTGCAAGGAAAGTCGCTGATATGTGTCTACTGCTGCGACACTGTTGACACTCCACGCGACTATAGATATCATATGGACATGATGCACCAAACTTTCAAAGTGTCCAATGCATTCCATCATCTTCAGAGAACAAAAGAATACCTAAAAGTGGACTTATTGTACTTGAAATGTCGTGATTGTGATATATCTTTAGAATCCATCGAAGCAGCAACCTCTCATATCCAAGAGATTCATAAAGATACTAGACTTGATCTGGATTATGACGTTGGACTCCAACCGTACGTCCTGGAAAATGATAAGTTTGTATGTTACATCTGCAAAAAGAATCTACCCACATTGTTCAACCTTGTAAGGCATATGGCTTGCCATTGCCAAAAATACACCTGTGAGGTTTGTGGTAAACAGTACATTACTGTAAATGCTCTTAAATACCATGTGAGGTGTAGCCATACAAAGAACAATATGTGCAGGAAATGTTGGAAGGCGTTCGCTTCAATGGAAGAGAAAAAAAATCACTTACGTAACTCTAAATCCTGTTGGAGTTTTGCCTGCATATATTGTGGTGAACGATTCCTATCTTGGGAGAGCAAGCAGAGGCATCTAGTGGATGTACACAATAAACCTAAGAATATTTACGAATGCAAAGAGTGCAACCTTACTTTCGCGTCTAGGAAGCCTTTTCATAATCATTACAAAATTTTCCATACGGATGAAGCGTTGATCTGTGCACATTGCGGCTTAAAGTTTGATTCAAAGAACAAACTGGAGAACCATAGGATTACGCATACGGGTATCAAACTGTTTAAGTGCGACGTGTGTAACAAGTCGTTCTCTAGAAAGAATAGTCTGACTCAGCACATGTGGATACACAGCGAAGTCAAGAGGTTCTCTTGCCAAATTTGCAACAAACAGTTTGCTCAAAAAGTCAGTTTGAAAGGTCACATGAAAACTCATCATCCTGATATTCAGTTTGAATTATAA
- Protein Sequence
- MVCVYCCEGYSDPAQFRKHNVDEHLTFNVEMAFAHIQDGGVKADCTDLRCRLCDLHLENLSDTAKHLSEIHNKQINHDYDLGIQPFKLESANKFSCAICSEKFTALRTLSRHTLSHFANYTCEACGKSYTTYSSLQYHVRNSHESDARICRKCKARFTTLADWKEHCKVSKQCGQHLCNVCGERFSAWHLKQNHMEAVHGKPKRTYPCLECNEVFEKRDACRIHFRIAHTSDHVACTCCGRKFDTETNLKRHMPMHTGEKFLIPCNLCSKSFETKRLLRVHMWEHDASKKKNNTVLQGKSLICVYCCDTVDTPRDYRYHMDMMHQTFKVSNAFHHLQRTKEYLKVDLLYLKCRDCDISLESIEAATSHIQEIHKDTRLDLDYDVGLQPYVLENDKFVCYICKKNLPTLFNLVRHMACHCQKYTCEVCGKQYITVNALKYHVRCSHTKNNMCRKCWKAFASMEEKKNHLRNSKSCWSFACIYCGERFLSWESKQRHLVDVHNKPKNIYECKECNLTFASRKPFHNHYKIFHTDEALICAHCGLKFDSKNKLENHRITHTGIKLFKCDVCNKSFSRKNSLTQHMWIHSEVKRFSCQICNKQFAQKVSLKGHMKTHHPDIQFEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -