Basic Information

Insect: Carposina sasakii
Gene Symbol: -
Assembly: GCA_014607495.2
Location: CP053176.1:6414147-6416889[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 2.2 1.7e+02 3.6 3.4 2 23 207 231 206 231 0.82

2 10 0.00011 0.0084 17.1 1.1 1 23 237 259 237 259 0.98

3 10 8.9e-05 0.0069 17.4 0.6 1 23 265 288 265 288 0.95

4 10 1.1 85 4.5 0.0 5 20 299 314 296 316 0.88

5 10 2.3e-07 1.8e-05 25.5 1.0 2 23 332 353 331 353 0.96

6 10 3.5e-06 0.00027 21.8 2.2 1 23 360 382 360 382 0.98

7 10 8.9e-06 0.00069 20.5 0.5 1 23 388 410 388 410 0.97

8 10 6.9e-06 0.00053 20.9 2.1 1 23 416 438 416 438 0.96

9 10 0.00013 0.01 16.8 3.9 1 23 444 466 444 466 0.97

10 10 6.4e-05 0.005 17.8 4.5 1 23 472 495 472 495 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	2.2	1.7e+02	3.6	3.4	2	23	207	231	206	231	0.82
2	10	0.00011	0.0084	17.1	1.1	1	23	237	259	237	259	0.98
3	10	8.9e-05	0.0069	17.4	0.6	1	23	265	288	265	288	0.95
4	10	1.1	85	4.5	0.0	5	20	299	314	296	316	0.88
5	10	2.3e-07	1.8e-05	25.5	1.0	2	23	332	353	331	353	0.96
6	10	3.5e-06	0.00027	21.8	2.2	1	23	360	382	360	382	0.98
7	10	8.9e-06	0.00069	20.5	0.5	1	23	388	410	388	410	0.97
8	10	6.9e-06	0.00053	20.9	2.1	1	23	416	438	416	438	0.96
9	10	0.00013	0.01	16.8	3.9	1	23	444	466	444	466	0.97
10	10	6.4e-05	0.005	17.8	4.5	1	23	472	495	472	495	0.98

Sequence Information

Coding Sequence: ATGTCGGAAGAAGGAGATACTTATTGCCGCCTATGTGCTGAACCTACACCCATAACACAGCTAATAACGCCCACAGAAGATGTTGGAGTCTCGTCCAAAATCACAACAAAAATGCAGTGGATAAATATCGATATTACTATTAATAATCTACCTAATACAATATGCTTTTCGTGCTTCGACCAATTAGAAAGAACATGGACGTTCCTACACAACGTTCGGACAGCTCAAAACAAGTTAAATTCAATATTCCTGAAGCAACCAATTGATATGGAAAATGATAATAAATCGAATGAACCTGGCAAACCAGCCGATAAGGACTGGGAAGAGTTTCAAGATCCTAAAGTAGAAATCAAATGCGAGGTACAGAAATTGAATAACATCATAAACAATGTAGACACAAACTTTAATGTCGAAATTGTGAAGACTGAGCTACCTACAGACGACGAAGTTATGGATTCTCTATTAAACCACGAAGGCTGGAAGTCATCGGACAGCGATAATATACCTTTGCTGTCCGTTTCTAAGAAGAAAATAAAAAATAAAAAGAAAAGCAAGTTAAAATTTATATCGGAAGAGATTCCAATCGAGATGGCGCTACTACTCACATGGGAAGACTACATGTGCCATTGTGGGACTTGCGACGCTCAGTGCAAAAATATAGAGTCATTAAGACTGCATTCGTTAGAGATCCATCAACAATGCTGTTCATTTAAATGTGCGGATTGCGGCAAAGTTTTGAGTAACCACAAATCTTTCATTACACATGCTAGAGGTCATAAAAAACTACTTAAATACAGCTGTGAATACTGCAACAAACAATTCCCTAAGCCCGGCTTAGTAAAACGGCATAGAAATGAGATGCACATAGAAAAAGAATTTGTTAGGACATGTATTACTTGCGGTATCATATTTGACGATAGATACCTATATGAAGACCACTTAGATATATATGGTAAACAGATGATTAAAAAGAAAGTTAGCATTGAGAAACTTGTATGCAATTATTGCGATAAAGAGTTCAAATCTCGAAGCAATTTACAGCAACATAGGTTAGTTCATACAGAACGTAGGAGAGAGTTCTCCTGTCACGTTTGCGGTAAGATGTTCTTTACGAAGGGCACATTAGGCACGCACATGTTAACGCATGACGACACAAAACGCTTCAAATGTGAATACTGCCCAATGACATTCAGAGCTAGGGGTAATCTCCAATCACACATCAGCTTGCACTCCGGTGTAAAGCCATTTGTGTGTGAACAGTGCGGTAAAAGCTTCAGAGTAAAACGTCATTTGAAATCTCATTCAATTGTACACACAGATCTCATGCCTTACGCATGTGAGTACTGCCACAAAGCATTCCGATTCAAAACTAGATTGAATCTACATTTAAGACAGCATACTGGTGCCAAACCGTACAGTTGTGTTCACTGTGAAAGAGACTTTACCAACGGTTCTAATTTCAAAAAGCATATGAAACGCAGACATAATATTGACACGTCTAGGAAACGTTATAACAATGTTGTTGAACATAAAATAGAGGATGGTGTAATTAGTGACCAAAATGTCAGTCAAACTTAA
Protein Sequence: MSEEGDTYCRLCAEPTPITQLITPTEDVGVSSKITTKMQWINIDITINNLPNTICFSCFDQLERTWTFLHNVRTAQNKLNSIFLKQPIDMENDNKSNEPGKPADKDWEEFQDPKVEIKCEVQKLNNIINNVDTNFNVEIVKTELPTDDEVMDSLLNHEGWKSSDSDNIPLLSVSKKKIKNKKKSKLKFISEEIPIEMALLLTWEDYMCHCGTCDAQCKNIESLRLHSLEIHQQCCSFKCADCGKVLSNHKSFITHARGHKKLLKYSCEYCNKQFPKPGLVKRHRNEMHIEKEFVRTCITCGIIFDDRYLYEDHLDIYGKQMIKKKVSIEKLVCNYCDKEFKSRSNLQQHRLVHTERRREFSCHVCGKMFFTKGTLGTHMLTHDDTKRFKCEYCPMTFRARGNLQSHISLHSGVKPFVCEQCGKSFRVKRHLKSHSIVHTDLMPYACEYCHKAFRFKTRLNLHLRQHTGAKPYSCVHCERDFTNGSNFKKHMKRRHNIDTSRKRYNNVVEHKIEDGVISDQNVSQT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -