Csas009175.1
Basic Information
- Insect
- Carposina sasakii
- Gene Symbol
- -
- Assembly
- GCA_014607495.2
- Location
- CP053178.1:1767926-1776186[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00096 0.075 14.1 1.7 1 23 167 190 167 190 0.95 2 13 4 3.1e+02 2.8 4.3 1 21 195 215 194 216 0.94 3 13 0.38 29 6.0 1.1 2 23 224 245 223 245 0.96 4 13 2.8e-05 0.0022 19.0 1.1 2 23 252 273 251 273 0.95 5 13 6.8e-07 5.3e-05 24.1 0.4 1 23 280 303 280 303 0.98 6 13 1e-05 0.00079 20.4 3.1 1 23 309 331 309 331 0.98 7 13 2e-06 0.00016 22.6 1.6 1 23 336 358 336 358 0.98 8 13 0.00018 0.014 16.5 3.9 1 23 365 387 365 387 0.98 9 13 0.0015 0.12 13.5 3.2 1 23 393 415 393 415 0.93 10 13 0.00046 0.036 15.1 6.2 1 23 421 444 421 444 0.97 11 13 5 3.9e+02 2.5 0.2 2 12 455 465 454 473 0.77 12 13 2.7e-05 0.0021 19.0 1.2 1 23 478 501 478 501 0.97 13 13 0.00048 0.038 15.1 2.0 1 23 507 530 507 530 0.93
Sequence Information
- Coding Sequence
- ATGTCTGAAATATGGAATTTAGAGTCACTGTGTCGCTGTTGCCACTCAGACGGTAATTTTAAGAGCTTGCAAACAACATATTATCACGACGATGGACAGGAAACCTACGCACAAATGCTGCAGGATATTTTTGGTGTCACGATCAAACCTCCTGAATTTGTGGCCAGCTTTGCTATATGCGAGACATGTATGAAATATCTAGAAGATGCATTTAATTTTAAAGCAGCAGTTTTGAGATGTGAGAGAAAATTTGAGGAATATTTGCAGAATTATGAAACTGATGACAAAGATTTTGACTTAGACCTTGTTGGTGAATACGATGACAATCTGAATAATGGAGGTGTTGAGATTGAGGCCAAAAATGAGTTCGCAAATGAGGTCGCAGTGAAGGTAGAGCCCAAAGAGAAAAAGTCCATCAAGAAACCTACAGCCAAACAAAGTAAGAAAAGTACACCCAATAAATTATATGAAAAGACTAAAACGTCGGACGGCAAAAGGTATACGTGCAAAAATTGCAGTGAATCATTCACGTCCGTATCTCAAATTACTAGCCATTTATTTAGCAGACACAGCAAACAATGCCATAAATGCCAAGCATGCCGCAGAAAATTCTTATACGTCGACAATCTAAATAAACATCGAAAATTATCCCAAGTAGGGAAGCAACTACAGTGTGATTTTTGCAAGAGAAATTTCCTCGGCAAATGTGCTCTAGCTAACCATGTAGCGACACACACAAGAAAACCTTCAGTCGTCTGCCATATATGCCAAAAAGAGTACGCCAACAAATCTACGTTCAGACGACATTTAATCTGGCATGAGGGTAGGAACAAAAAATTTGTCTGCGACATTTGTGGGCACGGCTTCAATGACAAAACGAATCTAAACATACACATACAAACCGTTCATTTGAAATTGCGCAATTTCCGCTGCGATGTGTGCCCGAAAACTTTTACGGCGAAAAAACATTTAACCATCCACTACATGAAGCATACCGGGGAAGCGTTTTGTTGCGAGATATGCACTAAAAAATTTGCTACACCAAACAGTTTGAGAGTACACATGATAACGCACGAAAATCCCGAAAAGAAGTATTGTTGTAAAGTGTGCAGCAAAGTGTTTAGTGCAAAACGGAGTTATATGGCCCATACTAGAACTCATTTGGGGGAAAAACCATTTTTGTGTTCGGAATGCGGCAAAGATTTTACGTGCAAATACAGTTTGAACCGACATTTGGATCAGCATAGAGGTATCAAACCTCATTCGTGTTCAGAATGTGGGTTCAAATTTCAACACAAAACGCAGTTAGATAGGCATATACGTAGACGACATAATCCCTTACCAGAGTTAGTTGTTAAAGTTAAATGTCCAATATGTAAACTGGTAGTAAAAAATATGGAAAAACACACGGAGGCTCACACAAAAAGACCGTATTCGTGTGAGTATTGTCAGAAAATGTATCCAGAAAGAAGAACGTTGAATCGCCATATTAAAGTACGGCATTTCGGTTCTAGACCCCACGAATGTGACCTTTGCGACAAAAAATACGCAACTTCTACTGCTTTGAAAAACCATAAGGTTAGGAAACATGGTATGTCGACGAAAAAAGAGATTAGTATAGATCAGTTTATACCGCAATATAATATTTGTAAAAGTGAAATAGAGTAA
- Protein Sequence
- MSEIWNLESLCRCCHSDGNFKSLQTTYYHDDGQETYAQMLQDIFGVTIKPPEFVASFAICETCMKYLEDAFNFKAAVLRCERKFEEYLQNYETDDKDFDLDLVGEYDDNLNNGGVEIEAKNEFANEVAVKVEPKEKKSIKKPTAKQSKKSTPNKLYEKTKTSDGKRYTCKNCSESFTSVSQITSHLFSRHSKQCHKCQACRRKFLYVDNLNKHRKLSQVGKQLQCDFCKRNFLGKCALANHVATHTRKPSVVCHICQKEYANKSTFRRHLIWHEGRNKKFVCDICGHGFNDKTNLNIHIQTVHLKLRNFRCDVCPKTFTAKKHLTIHYMKHTGEAFCCEICTKKFATPNSLRVHMITHENPEKKYCCKVCSKVFSAKRSYMAHTRTHLGEKPFLCSECGKDFTCKYSLNRHLDQHRGIKPHSCSECGFKFQHKTQLDRHIRRRHNPLPELVVKVKCPICKLVVKNMEKHTEAHTKRPYSCEYCQKMYPERRTLNRHIKVRHFGSRPHECDLCDKKYATSTALKNHKVRKHGMSTKKEISIDQFIPQYNICKSEIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -