Csas027103.1
Basic Information
- Insect
- Carposina sasakii
- Gene Symbol
- -
- Assembly
- GCA_014607495.2
- Location
- CP053151.1:2593181-2602542[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 4.7e-06 0.00036 21.4 1.1 1 23 189 211 189 211 0.99 2 27 0.00027 0.021 15.9 0.6 2 21 248 267 247 268 0.92 3 27 0.002 0.16 13.1 2.2 3 23 305 326 304 326 0.97 4 27 6.1 4.7e+02 2.2 0.2 2 12 343 353 342 360 0.86 5 27 0.0049 0.38 11.9 0.8 1 23 373 396 373 396 0.97 6 27 0.0034 0.26 12.4 0.2 1 23 415 437 415 437 0.96 7 27 0.0013 0.1 13.8 1.0 2 23 471 492 470 492 0.95 8 27 2.3e-05 0.0018 19.2 1.1 2 23 534 556 533 556 0.97 9 27 0.0024 0.18 12.9 1.4 1 23 606 629 606 629 0.98 10 27 0.00092 0.071 14.2 0.4 1 23 683 705 683 705 0.97 11 27 0.00028 0.022 15.8 3.1 2 23 717 738 716 738 0.96 12 27 1.3 1e+02 4.3 0.6 2 23 750 771 749 771 0.94 13 27 0.007 0.55 11.4 1.1 1 23 781 803 781 803 0.98 14 27 0.009 0.7 11.1 5.4 1 23 832 854 832 854 0.95 15 27 0.0049 0.38 11.9 2.9 1 23 865 887 865 887 0.97 16 27 4.7e-05 0.0037 18.3 1.5 1 23 895 917 895 917 0.96 17 27 0.00063 0.049 14.7 0.2 2 23 937 959 936 959 0.97 18 27 1.3 1e+02 4.3 1.7 1 23 977 999 977 999 0.95 19 27 0.0024 0.19 12.9 0.3 2 23 1039 1061 1038 1061 0.95 20 27 0.0054 0.42 11.8 0.2 2 23 1084 1105 1083 1105 0.94 21 27 0.4 31 5.9 0.9 2 20 1109 1127 1108 1128 0.93 22 27 0.0033 0.26 12.5 0.2 2 23 1186 1207 1185 1207 0.95 23 27 0.036 2.8 9.2 0.9 2 23 1246 1268 1245 1268 0.94 24 27 0.18 14 7.0 2.7 2 23 1285 1303 1285 1303 0.90 25 27 0.19 15 6.9 0.5 2 23 1376 1397 1375 1397 0.93 26 27 0.00021 0.016 16.2 0.4 2 23 1408 1430 1407 1430 0.96 27 27 1.1 82 4.6 2.6 2 20 1468 1486 1467 1488 0.92
Sequence Information
- Coding Sequence
- ATGGCCCTCAAACTTGGAAAATGCAGGCTTTGCCTCAAACTCGGCGACTTCTTCTCTATCTATGCGGTGGACAATTCCCTTCAGCTCGCAGAAATGGTTATGGAGTGTACGCGTGTTAAAGTTTACGAAGGAGATGGACTTCCAGACAAGATATGTTCCGAGTGTGTTCAGAAGCTTAGCTCTGCTTACATCTTCAAACAACAGTGTGAACGATCTGATGAGGAGCTGCGCAGAAACTATGTACCACCTCCAGGGTTCAGCATTTCCCCTCCGCCGACGGCAGTTAACCGGCAGAGCAGCGACTCTGCGTTCTCCAACCAGACGGACAGCTCGGGCCAGGCCAAGCCGGCGGCGGACGCGCCGGGCCCGGCCGGCCGCCGCAAGCGAAGCCGCGACGCCGAGCGCCCGCCGTCTGCCAACAAGCGCGTGCAGGAGCTCAAGCGCCCGCCCAAGAGGCCGCGCTACCCGTCCGGGAACACCTCCTTCATGGACTCCGACTACGACGACAACAGCGTCTCCCGTTTCTCGGCGGAAACCGACTCGGACGAGCCGCTGCTGGGGAATTTCAAGTGCAACGCGTGCGATAAATCCTTCAAAACTGCCGTCAGTCTGGCCAATCACAAACGCACGCACACCGATAAAAGTCAACCCGACGAGCGCAGCAAATCGCTGGGGGAGAATGCGGTCGTCAACGTGTCGACGCACGGCATGGACGACGCTCACGACTCGGAGGACCGCCTCAGTTGTCAGAAATGTGGGAAGAGTTTCAAGTTGAAGATAATGCTGAAGCGGCATTTAGATACGTGCGGGAAGACGCCGCAAGTGTCGCCCCAGAAAGAGTTGTTTATCAGCTTGGAACCGATCGATCAGGTGGTGAGTCAGTCTCCTCCGAAACCGACGAATGCAGTCGATTGTCATATATGCCAGGATAAGTTTAAAACTACGGCAAATCTGAAGAAGCATCTGAAAGTAGTGCACGCAGCGGCGCTTCCAAATCCGGAACCGTCGGCAAAAAAATTGACGGTTTCGTGTTTATATTGTCATGAATCATTCGACGACTTGTACGTGCACAATTCTCATTTCAATTCGTGCTCCAGAAGATCTGTTTTGAACTCGTATCCCTGTCCTATATGTCAACGGGAGATGAGTAACAGGAATTCGTATTTTAGACACTTAAAGAGTCTGCACTTTGAGGCCCCAGAGGGTTCGGCCAGCAAGCCCGGGGAGAGTGCGCAGAGCAAGTTCGAGTGTCGCATGTGTAACAGGAAGCTGCCCTCGCAGGACCTGCTCATCAAACACCTGGCCGAGCACGTCTCCAACATCGACGATGACGAGTCTAGACCTAGCACCGTAGACGATTCGGTGTCCGTTCACTCGGAGTACAGCGCTACAAAAAGCGAGGGTCCGCTAAAGTGTCGCGCGTGTGACAAATCCTTCAAGTACAAGAAGGCTCTAGAAACGCACGAGGCGAGGCACACCTCCGACGAGATAACGGTGAAGACGGAACCTCCGGACAAGGGCCCCGGCGAGGTGTTGGAGATGACGTACTCGCCCGACGGCTTCGACAGCGAGTCCAGCGGCTCCGAGCGGGACGACCTGACGTGCTCGGTGTGCGACAAGCAGTTCTCGTACCGGCGCCTGCTGGACGCGCACATGCGCACCAAGCACACGCGCTGCGCCGGCGTCAAGCGCGCGCGCGTGGGCCTCAAGGACTGCGCCGTGCGCTGCCTCATCTGTGACGCCAGCATGACGGTGGGCGCCGTCAACGCGCACAACGCCACGCACCAGGCGCAGGGCGTCAAGCCGCGCAACCTGTACACGTGCCGCGACTGCGGGGACCAGTTCAAGTCGTGCACCAGCCTCGCCACGCACATCAAGATCGTGCACCGCCTCAAACAGGTGCCTAAGAAGGACGAGTTTGAGGGCGCAGACCTGGCGGATTTTTGTGAAGTCGTTGTGACGAAAGCGGAACCCCTGGACGATCTCCAGACTCACAACGGCTTGGAAGGCGTTCCGCGGGCCGCGCCCAGCGTCAACCTGGCCGGCTTCACGTGCCCCATCTGCGGCAAGCAGATGAAGACGCTGCTGTCCCTCAAGCGGCACGTCAACTGGCATTCCAACGTCGGCAACAACTTGGAGAAGAAGCTCGAGTGTTTCGTTTGTAAGGAGACGTTCCGCTTCCAGAGCCACTACAAGCTGCACATGCGCGCGCACTCGCGCGACCCGCACGTGGACCCCGCGCTGCTGACGTGCGGCGTGTGCGGGCGCCGCAGCCAGCACCTGCGGGCCGCGCAGGCGCACACCAACTACCACAAGCAGACGCGCTTCAACACGCGCGACTACCAGTGCTCCATCTGCAAGCGCGTGTTCCAGTTCCGCAAGGTGTACCTCTCGCACATGGCCATCCACTACAAGCGCGGCGAGGGCCTGTCGGACACGGTGGTCGGACACGCCACGCCCAAGAACGCGGACCTGAGCGTGTTCGACGGTACACACACGTGTCATCTGTGCGGCAAGGTGTGCGCGTCCGAGGTGTCGCTGAAGCACCACGTGACGTGGCATCGCTCCAAGACTATGCTGTACGGCGCGCGGCACGAGTGCCCGGTCTGCCACACGCTGTTCACCAACAAGAAGCGGCTGGAGCTCCACGTTCGCGAACACTACGAGGACCCGGCCGGCCCGCACTACTGCCAGGTGTGCGGCAAGGGCTTCAGCGACGAGGACTATTTCCGCCGACACGTCAAGGGACACAACTTCGACCACCAGAGCCATCAGAAGCGGCTCGAGAAGCTGCGGAAGAACAAGGTCAAGTGCCCGATCTGCAGCCGGTACTACGCAGACCTGGTCAAACTGATCAGACACCTGCGCCGCACGCACCCCGAGAGCAAGATGATCAAACCGGACCCGGACGCGCCGCCGCCGCGCTACTTCTCGTGCAAACTCTGCGCGAAGGCCTTCCTCGACGAGAAGCGACTGCGCCACCACGAGGAAAGCCATCTCAGGAAACCGAGCCACTACAAGTGTAAATTCTGCTTCCGCACCAGTCTCTCGATGAAGCAGCACAACATTCACATAAAGGCTCATCTAGTCAAGAAGCACATCGATAATCCTCTGAAATGTCCGCAGTGCCCGGAGATGTTCATTCGCGGGTACGATCTACATTACCACTTACGCGACGTGCACGGCGTCACAGAGCGATGGATCGCCGATCCCAACGACAAGATTACTCACGGACCTCTACAAGACTTGCAGTGCTCGATCTGCTTGAAGGTCCTCGCGAGCAAGGGCAACTACGAGCGACACATCGACTTCCACAACACGCTTCGGTGCAACTACTGCTTCGAGTACTTCAGCACGCACAGGTTTTTGGAAGGACATCTAGCTTTCAGCTGCGCGAAGAGGCGGCTGCTCGGTGATACGGAGGTTCACGCGAGAAAGGTCAAGTGCTACATCTGCTACAAGGCCTTCCATCTTCAGGTGAAGCTGGACTGCCACTTGCGCACGCAGCACGGCATCAAGGTCAACAAGGAGGTATCGCAGAGCCAGAGAGAAATCGTTTGCGACTACTGCTTTCGAGTCTTCGAAAATACTGACGCGTTGAACACGCACAAAATATATCACCGCACTGTAGGCTATTATGGATGCATTTACTGCTCCAAGAAATTCTTAACTCTCACTGGGTATAGGAAACATAAAAATCATCATTTCTCTCAACTTAATGTCGACAATCCTACAAAATGCGAGCATTGCGACGAAACGTTCGTTGCATTTAGAGAAATGATATATCATATGAAAGATGAGCACGGAGACGACAAGGAATGGATTGTGGAGCCCACAGAATCCATCGAGGAAAAATGTAATATATGTGACAAAGTATTTTTCAATTTACATAGACATTTGGCATATCATGAGCAGAACAGGTGTAAGAAATGTGCCGAGTACTTCTTTTCCAGACACGACTTTGACAGTCATCTTTGCTCCATAGAGAGTGATGAGGAAGTAAATGAAACTAACGAAAACAGTTTAATACCAAAATATGAGGAGTGTGCATTCTGCTTCAAGCCTGTTACTAAGAAGGTTTCTAAGAGATTGCACAACCAAATGCATACTTCCTCTGGTTCTATATCCTGTCGGTTCTGTCCACTCAAATTTAAAACTATGGATGCGTTCAACATTCACGCTTTCTCTCACAGGAGTAGGAAGTATACCAAAAAACCATTAAAATGCCGGGAGTGTGGAGAGAAATTCACGAAATATGGTCCATTTATAAAGCATATGAGAGTTGTTCACAAGTCCAAACAGAAAATGCATTACCGGGGGACCGTTAAGCCAGATCAATGTGTCGTTTGCGGAGACTTCTTCCCAAACCTGCATAATCATTATCGCGCGCACCTCCTAAACCAATGTCAACTCTGTAAAAAGTATTTTACGTCAGCCAAAGTTTTTAGCAAGCACGAGTGTGACAAAGAGGACTCGGACCCGACTAAAGTATTCACATCTGACGCCAACTTGAAAGCTCTCATCAATAGTTATGTACCGCAAGATGAGAAGGATGATGAAAAATATATAATTTCAAATGACTCTGACGAAGAGGACATTTCAATCCCGCTTCCTGTTGAGGAGAAAGAGTCACAGGAGAACCATAACAATGTTGACGAAAAATCACCAGAAGATCCAGATAATAATGACACTAACAGTCAGGACACAGAGAACGAAGACGAAAACAGTCAAAGCTCCATGGAGAAACAGATGCACCTCATGGCCCAGACACCTATTATATCTGATGTACTGTCATTGCTGGAGAAGAAAGAGGCAATAAACCAAAAAGTTCCAGATGAGAATATAGTATGTTTGACGGACGACGATGACGAGGACATAAGCATAAGTGCAGATATTCCTATTATAACAATTGATTAA
- Protein Sequence
- MALKLGKCRLCLKLGDFFSIYAVDNSLQLAEMVMECTRVKVYEGDGLPDKICSECVQKLSSAYIFKQQCERSDEELRRNYVPPPGFSISPPPTAVNRQSSDSAFSNQTDSSGQAKPAADAPGPAGRRKRSRDAERPPSANKRVQELKRPPKRPRYPSGNTSFMDSDYDDNSVSRFSAETDSDEPLLGNFKCNACDKSFKTAVSLANHKRTHTDKSQPDERSKSLGENAVVNVSTHGMDDAHDSEDRLSCQKCGKSFKLKIMLKRHLDTCGKTPQVSPQKELFISLEPIDQVVSQSPPKPTNAVDCHICQDKFKTTANLKKHLKVVHAAALPNPEPSAKKLTVSCLYCHESFDDLYVHNSHFNSCSRRSVLNSYPCPICQREMSNRNSYFRHLKSLHFEAPEGSASKPGESAQSKFECRMCNRKLPSQDLLIKHLAEHVSNIDDDESRPSTVDDSVSVHSEYSATKSEGPLKCRACDKSFKYKKALETHEARHTSDEITVKTEPPDKGPGEVLEMTYSPDGFDSESSGSERDDLTCSVCDKQFSYRRLLDAHMRTKHTRCAGVKRARVGLKDCAVRCLICDASMTVGAVNAHNATHQAQGVKPRNLYTCRDCGDQFKSCTSLATHIKIVHRLKQVPKKDEFEGADLADFCEVVVTKAEPLDDLQTHNGLEGVPRAAPSVNLAGFTCPICGKQMKTLLSLKRHVNWHSNVGNNLEKKLECFVCKETFRFQSHYKLHMRAHSRDPHVDPALLTCGVCGRRSQHLRAAQAHTNYHKQTRFNTRDYQCSICKRVFQFRKVYLSHMAIHYKRGEGLSDTVVGHATPKNADLSVFDGTHTCHLCGKVCASEVSLKHHVTWHRSKTMLYGARHECPVCHTLFTNKKRLELHVREHYEDPAGPHYCQVCGKGFSDEDYFRRHVKGHNFDHQSHQKRLEKLRKNKVKCPICSRYYADLVKLIRHLRRTHPESKMIKPDPDAPPPRYFSCKLCAKAFLDEKRLRHHEESHLRKPSHYKCKFCFRTSLSMKQHNIHIKAHLVKKHIDNPLKCPQCPEMFIRGYDLHYHLRDVHGVTERWIADPNDKITHGPLQDLQCSICLKVLASKGNYERHIDFHNTLRCNYCFEYFSTHRFLEGHLAFSCAKRRLLGDTEVHARKVKCYICYKAFHLQVKLDCHLRTQHGIKVNKEVSQSQREIVCDYCFRVFENTDALNTHKIYHRTVGYYGCIYCSKKFLTLTGYRKHKNHHFSQLNVDNPTKCEHCDETFVAFREMIYHMKDEHGDDKEWIVEPTESIEEKCNICDKVFFNLHRHLAYHEQNRCKKCAEYFFSRHDFDSHLCSIESDEEVNETNENSLIPKYEECAFCFKPVTKKVSKRLHNQMHTSSGSISCRFCPLKFKTMDAFNIHAFSHRSRKYTKKPLKCRECGEKFTKYGPFIKHMRVVHKSKQKMHYRGTVKPDQCVVCGDFFPNLHNHYRAHLLNQCQLCKKYFTSAKVFSKHECDKEDSDPTKVFTSDANLKALINSYVPQDEKDDEKYIISNDSDEEDISIPLPVEEKESQENHNNVDEKSPEDPDNNDTNSQDTENEDENSQSSMEKQMHLMAQTPIISDVLSLLEKKEAINQKVPDENIVCLTDDDDEDISISADIPIITID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -