Csas000158.1
Basic Information
- Insect
- Carposina sasakii
- Gene Symbol
- -
- Assembly
- GCA_014607495.2
- Location
- CP053152.1:11196112-11203590[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 3.3 2.5e+02 3.0 1.1 4 23 478 499 476 499 0.84 2 23 0.035 2.7 9.2 0.6 1 22 504 525 504 525 0.95 3 23 5.3 4.1e+02 2.4 0.3 1 22 567 588 567 590 0.82 4 23 0.0054 0.42 11.8 0.9 3 21 601 619 599 620 0.95 5 23 0.82 63 4.9 0.1 2 23 628 650 627 650 0.89 6 23 0.0074 0.57 11.4 0.2 3 23 670 691 668 691 0.96 7 23 0.0013 0.1 13.7 1.5 1 23 697 720 697 720 0.92 8 23 0.098 7.6 7.8 0.0 1 23 746 769 746 769 0.90 9 23 0.015 1.1 10.4 3.4 1 23 774 796 774 796 0.97 10 23 0.015 1.2 10.4 0.3 1 23 802 825 802 825 0.95 11 23 0.00059 0.046 14.8 1.4 1 23 839 861 839 861 0.98 12 23 0.00015 0.012 16.7 1.8 1 23 910 933 910 933 0.97 13 23 0.0046 0.36 12.0 2.3 1 23 998 1021 998 1021 0.96 14 23 0.00086 0.067 14.3 2.1 2 23 1049 1071 1048 1071 0.95 15 23 0.0071 0.56 11.4 0.1 2 23 1077 1099 1076 1099 0.94 16 23 0.0076 0.59 11.3 0.2 1 21 1143 1163 1143 1164 0.95 17 23 0.00072 0.056 14.5 0.5 1 23 1174 1196 1174 1196 0.93 18 23 0.00031 0.024 15.7 0.3 2 23 1287 1309 1287 1309 0.93 19 23 2.7e-07 2.1e-05 25.3 1.4 3 23 1316 1336 1315 1336 0.98 20 23 0.45 35 5.7 1.6 3 23 1357 1377 1355 1378 0.94 21 23 0.21 16 6.8 0.0 1 23 1402 1424 1402 1424 0.97 22 23 0.042 3.3 9.0 0.8 1 23 1430 1453 1430 1453 0.95 23 23 0.0002 0.016 16.3 0.4 1 23 1461 1484 1461 1484 0.96
Sequence Information
- Coding Sequence
- ATGAGTGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTACTGCCGATTTTTCCTACCACCAGTTCGGATGGCACGGAACCTCCCATTCTTGCATCAAAAATCAAGGATTGTGTTGATATTCAGATAAATGAAAATGACGACCTGCCAGCTAATGTCTGCAGGAAATGCATGGACAATGTCAATAACTGGCACATATTCAAAACAGTATGTAAGAGGACACAAAACAAACTACAGTCTCTATTGCAAAGGGATGGCAGCCAACTAGAAGAGGTTAAAGTGAAAAGTGAACCGTTGTCTGATGAGGGTTATGAAGGAGTAGTTATTGATGGTTCCTACCCGAATAATGAGGATACCAATAAAATACAATTGGGAGGCCCACCCATATTGGCATCACTGGGGCTTACACCAAGGAGTGAAAAGGGTGTGGACAGCGAAAATAACGGCGAAGATGAGGAAGATGAAGAAATGAGTGAACTAATTCCTCAATATAATAAAGTATCAAACATGCCGGAGGTTTCCATCACAGTTATGCGACCGACAGGCCAAACCAAAATTATGCCCCCAAGAATGCAATCTCAAAGTATACACCCCCCTGTACCAATACCCATTAAAAATAGAATCCCTCAAAATAATTTGCCATATCCCCTTAGAATCAAAGCTCTGAAAGATTTACAAATAAAGAAAAAAGAACCACAGATTTTAAAGACTTTGCTAACTTCTAAGCCTGAAGTTTTAGTCTCTGAACCTGAAATCTTAAACTCAGGTCCAGAAAGCCCCGAGACTTTGATATCTGAACCAGAAATTGCATCTTTCCAAGTAGAGGCAATTTTATCTGAACCTGATGGATATGATGATCAGCAACACGGTGAAGATGAAATGGATGGTGGCAATGATGATCAGAACCAGAATTACGACACAGTAGACATGGATTCTGAAAATGAGATCGAAATCGCTCGACAAAAAGAAACAGAGGCTGATGATAGAAATGAAAACTTAAACATGGATGACGGTATGGAAGATGACAATTATCCTGAAGATAACGCCGAAGATAATATAGGAGATGCTCAAAGTGACGATAAAGATACAAGGAACAAAGAAACCGAAAATAATGCTGAAGCATCTAAAACGATTGATAACAATTATCATGATGAAGACGAAGATAACGATGAAGAGCCTCCGGATGGTTTAGCGCCTGAAGTGGAAATTAATGAGGACATACATACCAACTCCTACAATAGTGAACCTAATGAAGATGAAGAGGATCCTGATGGAACTGCCGATCCTAATGACTTGGCAGACCAGGTTGTAGCTCCAAAAGAACTTGATCCAGACAAACTGTATGTTACGAAAACTCAAAGGGATTTCATTGCCAAATTCCGGAACATTATTGAGCAGATTAATCTAAAACGATGCTTATGCTGTGACAAGGAATATCCTAGGAGAAAAGCTGTTATACAACACTTACAGAAAAATGGCCACAAAGTTCCGAAACACACATGCTATAATTGTGTTGTCACCTTTTCTCATATTGGTGCTCTACTCAGCCATATGAGATCTAACACATGTACAGACTTATGGAAAGTTATATACAACGAAAATGGAATTACAGATGATATAGTATTGGAAGACGAGCCGAAGGATGTGAAGGTTAACTACAAAGACATTTTCAATGCCAGATCTTACGCTTGTAAACTTTGTCCAGCAAAATTCCAACTAAAACAATTTATTATGAAACATGTATTAGATGTCCATGAAGATGGTCAAGCAAGAATTCCAATGGCTTGTGTTCATTGCCGAGCTCGATTCAAAGACAGAAGTTCGTGGAAGAAGCATATCCGTAACGGAGCTTGCACAGTTTACATTACTTGTGACCTGTGCTCTGAGAAGTTTGGAAATATGCAGGACTTTAACGACCACGCCTTAGCTGTTCACGCTGGTAACTTCGATCCAGATAACCAAAGTAAGTGCGTGGACGGTCGACCAACTGACTGTACTATCTGTGGAAAGAAGAATAGTAGCTACCCCAATTTAGTTAGACATTTGAAGGTGGTTCATAATGAAGAGAAACCTCATTACTGCACTCACTGCGATGCCAAATTTGAGCAAGCTGGTGATCTAAACACACACATATATGCACAACATTCCGACATGTCGCTAGGGACTCACAGTACTGAGCCCGATATGTCTCTCGTGAAAGAAGAGGCTGAGGAGTATCATTACTCATGTACCGAATGTAATGCCATATTTGAGACTGTGGACGCTTGGACGGATCATCAAGTTGCTGAACATAATCAAATTGCCCATCACTGTGATCAGTGTGAGAAGAAATTCTTGCGACCATCTGAGTTGGCTGAGCATAAGAATACCCATTTACGAGTTAAGTTCTATCCTTGCAGTGTCTGTTCAAATTCGTACAGTACTCCGCAGAAACTGTCGGAGCATGTGCAACAATCACATCCGGGAGGAGGTTCCAATTCTGCCGCCTTAGATACGGAGTTCTACTGTGACATATGCATCAGGTCATTCAAGAGCCGTCAAGCATTTTCCAATCACATGCGTATACATGCCAAAGTACCCACGACTAACAGGAAACCTGGAGAAGCTAAGAGCTTTCCGCCGCATATTATTGGAAAACCAATTAAACAATATTCAATGGTTCAATCTGGATTTACTGCTATCAAATCTACATGCAATGTTCCAAATGCTCCTTATTCGTGCGATATTTGCGGAAAGGGCTTTATGCACAAGAAGAACATTTGGAAACATAAGAAAATCTTGCATGCAGATCTTATTAATGATAGAAATGACAGTGAGGAAAATACCATGCAAGCATCCACAGAAGAGGATGAATATAACAATGATGAAAATGGTGCAACACTATCGACACCACAGTTTGACAGTTTTAACTTTAGTAGCTTCACTAATAATGTTCAGCAAGCAGCACCGCAGGCTCCACAGCCAGACCCAGTTCCATTCTCGTGTGATCTCTGCTACAAGAAATTCCCGATCAAGAGTAGTTTATACAAACATAAACGTGCCAAGCACGGTATTGTAAACCCTGGTTCGACTGGCTTCGATCACCTCCAACCAACGCCAACCGTCGCCGGCGACACTAGTAGTAGGTCCAGTTGTACGATTTGTAAGATAACGTTTTCTGACAAAAAATCCTATTACCGTCATAGAAAGAATGTGCACAAGACTGCCGCCCAGATGTGCAAGATTTGTGGAAAACCTCTTACATCTACGCAGGAACTTTACGAACATCTAAAAGCCGCCCATGCGAGAGAACTCCTAGGGCATAATGCTAATCAAGGTACGAGTAGAATTACAGATAACTCACAGGATTACGACCCGGATTATGAGCCCGAGACGGAGGTCATTGATCCCTCAGGGGACTATCAAGCTAGGTATCCTTGTGATACATGCGGTAAACAGTTTGTCGGTCTTCTGGCCTTGCAAAACCATCAATGTGTCAACCCTGTTCCTTCGCAACCTCAGACTTATGATTGTGAAATCTGTCACAAGAGTTACACATCTATCGCGGCGCTGAAAAGTCATCGCGGCTGGCATTTGCGTTCCCCTGACGGGAAAGCGGCTGCAAACAATAGTGGCCTTTGGATGCCTCAGCACAAAGTAACGAACAAAGTCAGCAAATACGAAGTACTGGATCCCACCCAGCTAGCTAAAGTGCAACACACGGTCCCACTTGCAGCCGTAGCCAAACGGAAGTTACCGCCGGAAGTAGAGGTTACTGTCGTGAATCCCAACAAAAAAATGCGTTCCGATGATTCATTCGACATGGAAAACCAGAACAGCTTCACCGGGCCTCTCGAGGATAGATATTGCACGATATGCGAGAAAGAATTCACTAAACGCGCCGCTTATCAGCGTCACATGGACGAAGTTCATCAACCGAATTCCGTCTTTTGCCCTCTGTGCGATAAGAGTTTCACTAGGAAATCGACTCTTATCGTGCACATGAAGAAGCATTACGAGGGTGGGGAAGGCAGTTCGTCGGCGACAGGTCAATTAGAAGAAGAGGGTACCGCTTGCGACTTGTGCGGTGTTCAGTGCGAAAGTGAGCAGGCTTTAAGAAACCACCGAGTGAGGCACCACGGCGAGGAGTCAGGCGATGACGATGACGATGGCGAAGCTAACGTGAACGTTCAGCAGCCGCCTGGCGAGTTCACGTGTGCACAGTGTGGAGACGGCGTGGCCACTCCGCGCGACTTGATCAGCCATCGCGCTATGCACTCCACGCCGTCCAACTTCTTCTGCAATATGTGCAAAGTCTACTTCGCTAGAGCCCTGGACTTATCCACGCACACCCGGGCGAGGCACGCGGAGAACGACAAAACCTATTTCCCCTGCGCAATGTGCGACCGTTTCTATATGAATAAGAAGAGTTTACAACGACACATTGAAATGGCACACTGA
- Protein Sequence
- MSVNYDRVCRLCLSSRGELLPIFPTTSSDGTEPPILASKIKDCVDIQINENDDLPANVCRKCMDNVNNWHIFKTVCKRTQNKLQSLLQRDGSQLEEVKVKSEPLSDEGYEGVVIDGSYPNNEDTNKIQLGGPPILASLGLTPRSEKGVDSENNGEDEEDEEMSELIPQYNKVSNMPEVSITVMRPTGQTKIMPPRMQSQSIHPPVPIPIKNRIPQNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVLVSEPEILNSGPESPETLISEPEIASFQVEAILSEPDGYDDQQHGEDEMDGGNDDQNQNYDTVDMDSENEIEIARQKETEADDRNENLNMDDGMEDDNYPEDNAEDNIGDAQSDDKDTRNKETENNAEASKTIDNNYHDEDEDNDEEPPDGLAPEVEINEDIHTNSYNSEPNEDEEDPDGTADPNDLADQVVAPKELDPDKLYVTKTQRDFIAKFRNIIEQINLKRCLCCDKEYPRRKAVIQHLQKNGHKVPKHTCYNCVVTFSHIGALLSHMRSNTCTDLWKVIYNENGITDDIVLEDEPKDVKVNYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQARIPMACVHCRARFKDRSSWKKHIRNGACTVYITCDLCSEKFGNMQDFNDHALAVHAGNFDPDNQSKCVDGRPTDCTICGKKNSSYPNLVRHLKVVHNEEKPHYCTHCDAKFEQAGDLNTHIYAQHSDMSLGTHSTEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQIAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSVCSNSYSTPQKLSEHVQQSHPGGGSNSAALDTEFYCDICIRSFKSRQAFSNHMRIHAKVPTTNRKPGEAKSFPPHIIGKPIKQYSMVQSGFTAIKSTCNVPNAPYSCDICGKGFMHKKNIWKHKKILHADLINDRNDSEENTMQASTEEDEYNNDENGATLSTPQFDSFNFSSFTNNVQQAAPQAPQPDPVPFSCDLCYKKFPIKSSLYKHKRAKHGIVNPGSTGFDHLQPTPTVAGDTSSRSSCTICKITFSDKKSYYRHRKNVHKTAAQMCKICGKPLTSTQELYEHLKAAHARELLGHNANQGTSRITDNSQDYDPDYEPETEVIDPSGDYQARYPCDTCGKQFVGLLALQNHQCVNPVPSQPQTYDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTNKVSKYEVLDPTQLAKVQHTVPLAAVAKRKLPPEVEVTVVNPNKKMRSDDSFDMENQNSFTGPLEDRYCTICEKEFTKRAAYQRHMDEVHQPNSVFCPLCDKSFTRKSTLIVHMKKHYEGGEGSSSATGQLEEEGTACDLCGVQCESEQALRNHRVRHHGEESGDDDDDGEANVNVQQPPGEFTCAQCGDGVATPRDLISHRAMHSTPSNFFCNMCKVYFARALDLSTHTRARHAENDKTYFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -