Csas009293.1
Basic Information
- Insect
- Carposina sasakii
- Gene Symbol
- -
- Assembly
- GCA_014607495.2
- Location
- CP053178.1:312452-325501[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 9.6e-06 0.00075 20.4 3.1 1 23 181 203 181 203 0.99 2 19 0.13 10 7.5 0.9 1 23 208 231 208 231 0.96 3 19 0.047 3.6 8.8 0.1 1 23 237 259 237 259 0.96 4 19 0.33 26 6.2 2.7 2 23 265 285 264 285 0.97 5 19 8.7e-07 6.8e-05 23.7 1.0 1 23 292 314 292 314 0.98 6 19 0.0062 0.48 11.6 0.1 1 23 368 390 368 390 0.98 7 19 0.27 21 6.5 6.1 2 23 396 416 395 416 0.97 8 19 0.0001 0.0078 17.2 4.8 1 23 422 444 422 444 0.98 9 19 1.2e-05 0.00094 20.1 0.2 1 23 450 473 450 473 0.96 10 19 0.00031 0.024 15.7 0.4 1 23 479 501 479 501 0.98 11 19 0.0043 0.33 12.1 1.2 1 23 507 529 507 529 0.98 12 19 0.00012 0.0093 17.0 4.6 1 23 535 557 535 557 0.98 13 19 1.9e-05 0.0015 19.5 4.1 1 23 563 585 563 585 0.98 14 19 0.0018 0.14 13.3 2.2 1 23 591 613 591 613 0.98 15 19 1.9e-06 0.00015 22.6 1.1 1 23 619 641 619 641 0.98 16 19 0.00017 0.014 16.5 1.6 1 20 646 665 646 667 0.94 17 19 0.95 74 4.7 1.2 3 23 676 693 674 693 0.89 18 19 4.6e-05 0.0036 18.3 3.5 1 23 699 722 699 722 0.97 19 19 0.26 20 6.5 5.2 1 21 728 748 728 749 0.94
Sequence Information
- Coding Sequence
- ATGGATTTCTGTATTGAGAATGGCGTTTGTCGTTGTTGCCTGTCCATGGGCACGTTCCGAAGTCTCGGGGTTCCATACATCTACGAGGATTGTGAAGAGATTTACTCTGTTTTATTACGCGATACATTCAATGTTGTCATAACCCCATCATCAGGGGAATCATACACAATATGTGAAGTGTGTGTGCCCAAGCTGAGGGAAGCAGCACATTTTAAAAAGCAGGTCCTGAAATGTGAAGAATCATTTGCACAGTACTATGCTGTACATAAAGACAAGATTTCTGTCGCTGATGTGAAAGAAACAGACATAGTGAAGGCAGAAGTTGAGGTCGATGTCCTGAAGTTGGAGATTGAAGAGAATAATGACTCTTCACATGAAAATGATGACTTCAAGTGCAGTAATGATGAGGGAGAGTTTCCAGAATCGTCCGTTAAGATATTCATCGAACCAGCCGTGGTTCCAAAAATACAGAAGCGATGTCGCAAGAAGAGAAATACGCCCAAGGAATGCAAAGATGAAATCGAATCTCAACAACACGACTATAAATGCGAGGTATGCTACAGACAGTTCACGTATCTGAGCTCATTCAAAGCGCACATGAGAAAGCACGAGGACAAAACGTATTCCTGTCAAATTTGCAACATCAAACATAGAAATGACGAAGAATTGACTGTGCATATACAACAGAGTCACTATAGTGAAAAAAAATATGCATGCACGTTATGTGTTGAAGATTTCAATGATGCAATCATGTTGAAGTATCATTTAGTGAAGCATTTCAAGGAGAGGGTGCAGTGTAAGATTTGCAGTAAAGAGTTGCAGAAATGCAGTTTGCCGAGGCATATGAAAATGCATCGGAGCGGTGAGAAGAAACACGTTTGTGATGTTTGTAACAGGTCTTATGTTAGTTCTGAGAATTTGAAGGTGCATATGCAGACACATGAAGATGAAGAAGAAGACCTAAAGCTATTAATAGATACAAAACCGCAAGACTATAAAACGGAAAGATTGAGAGACGAGCAATACATATGTTTAATTTGTAACACTAAACAGACGGACTTAACCCTTCATATTGAATCAAACCATTCCAGCGAAGGCAATTACCCATGTACACTATGTACTGAAATATTAGATACAGCAAACCTACTAAAAAACCATTTAGCAACTCATATAATGAAAAAAGTCAAATGCCCGCGCTGTCATAAAACTATGCGCAAAAACTGCCTTTGGAGTCACATGAAAACCCACAGCACAGATAAGAAGTATTCATGCAAACTATGCCAGAAATCCTTCTTCAAAAACAAACATTTGAAAGCCCATTTGGTGACCCATACTGGTGAAAGACCTTTTATGTGCGACGTTTGCGGCCGTACGTTTAATATTGAAAAGAATTTATTGAGGCACATTCGTGCAGTTCACGAGGGCGATAAACCGTTCTCATGTAATGTGTGTAACAGACAATTTGCAGCTAAGAGCTCTTTAGATGTCCACGTAAGACAACATACTGGTGAAGAACCGTATACTTGTGACATATGTAAAAAAGGCTACAAAGCGTACGCTTCATTTGTGTTGCACAAACGAAAGCATTCCGGCGAGAAACCTTTTTCGTGCAGCTATTGTAGCAAACAATTCGCGCACAAAAACACTTTTAAAGTCCATTTGCGTATACATACCGGTGAGAAACCGTATACATGCAATTATTGCAACAAGCAATTCGCTCAAAACGTGTCGCTTAAGCTACATCAATGCAGTCATACTGGCGATAGACCGTTTAGATGTGAAATATGCAATCAGCAGTTTGCTATGAGATCCACTTACAATCTACACCAATTCAAACACACCGGTGTAAAACCATATTCCTGCGATGTGTGCAAAAATGAGTTCACAACCAAAGGTAATCTGAAAAATCATATGAAAATACACAGCGGGGTAAAACATGTGTGTGAGATTTGTAAACACAGCTTCAACGATGAGAGTAATTTTAAAAGGCATGTAACGTTGAACACCTGTATGAATTATGATATTTGTAAGGTTTGCAATAAGGGCGTGAAGCATTTAGCTCAGCATATGAAAGTGCATTCTGAAGATAACCCGTTCACGTGTAGGGTGTGTAATAAACAGTTTTCAGGCAGTCGCCATCTTAAATCGCATATGCTGAAAATACATTCAGAAGAAAAGATGTTTTACTGTGAAATATGCTGTAGTCAGTTTTCGCATAGCAGCGGACTGAAACGGCATATATGTATGGGTATGGATATAAAGCAGTGA
- Protein Sequence
- MDFCIENGVCRCCLSMGTFRSLGVPYIYEDCEEIYSVLLRDTFNVVITPSSGESYTICEVCVPKLREAAHFKKQVLKCEESFAQYYAVHKDKISVADVKETDIVKAEVEVDVLKLEIEENNDSSHENDDFKCSNDEGEFPESSVKIFIEPAVVPKIQKRCRKKRNTPKECKDEIESQQHDYKCEVCYRQFTYLSSFKAHMRKHEDKTYSCQICNIKHRNDEELTVHIQQSHYSEKKYACTLCVEDFNDAIMLKYHLVKHFKERVQCKICSKELQKCSLPRHMKMHRSGEKKHVCDVCNRSYVSSENLKVHMQTHEDEEEDLKLLIDTKPQDYKTERLRDEQYICLICNTKQTDLTLHIESNHSSEGNYPCTLCTEILDTANLLKNHLATHIMKKVKCPRCHKTMRKNCLWSHMKTHSTDKKYSCKLCQKSFFKNKHLKAHLVTHTGERPFMCDVCGRTFNIEKNLLRHIRAVHEGDKPFSCNVCNRQFAAKSSLDVHVRQHTGEEPYTCDICKKGYKAYASFVLHKRKHSGEKPFSCSYCSKQFAHKNTFKVHLRIHTGEKPYTCNYCNKQFAQNVSLKLHQCSHTGDRPFRCEICNQQFAMRSTYNLHQFKHTGVKPYSCDVCKNEFTTKGNLKNHMKIHSGVKHVCEICKHSFNDESNFKRHVTLNTCMNYDICKVCNKGVKHLAQHMKVHSEDNPFTCRVCNKQFSGSRHLKSHMLKIHSEEKMFYCEICCSQFSHSSGLKRHICMGMDIKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -