Csas025200.1
Basic Information
- Insect
- Carposina sasakii
- Gene Symbol
- -
- Assembly
- GCA_014607495.2
- Location
- CP053169.1:3331870-3345452[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.4e-05 0.0034 18.4 6.9 1 23 196 218 196 218 0.98 2 13 2.4e-06 0.00019 22.3 0.2 3 23 232 252 231 252 0.98 3 13 0.00029 0.023 15.8 3.1 2 23 261 282 261 282 0.98 4 13 0.00014 0.011 16.8 1.9 1 23 288 310 288 310 0.98 5 13 1.1e-05 0.00084 20.3 1.1 1 23 316 338 316 338 0.98 6 13 2.6e-05 0.002 19.1 7.5 2 23 345 366 344 366 0.97 7 13 0.00012 0.0091 17.0 0.5 1 23 372 394 372 394 0.97 8 13 0.00013 0.0099 16.9 3.1 1 23 400 422 400 422 0.98 9 13 9.2e-05 0.0071 17.4 1.6 1 23 428 450 428 450 0.99 10 13 0.002 0.15 13.2 2.4 1 23 456 478 456 478 0.98 11 13 4.6e-06 0.00036 21.4 0.3 1 23 484 506 484 506 0.97 12 13 4.6e-05 0.0036 18.3 0.9 1 23 512 534 512 534 0.99 13 13 0.00051 0.04 15.0 3.3 1 23 611 633 611 633 0.99
Sequence Information
- Coding Sequence
- ATGGCTACTCCTGTTAAGCCGTTCATGAAATTCGACAAAATATGTCGTACTTGCCTTCAAATAAAGAAGGACATGAGGCCATTGTTCGAGCAACTTACTGCGACAATGCTGATGACTATTTCAAAAGCTCAGGTGGCAGTAGGCGATGGTCTGCCATCCCAGCTGTGTCTGCAATGCGTGCACCAAATCTCGCGGTGTCACGCCTTCAAGGAGATGGCCGAGAGGAACGAGATCACGCTGCGAGAACAAGCCAAGGCGATGGCTGAAGAGCAGCTCAAACTTGCGGAGAAGGACTTACTACCTCCGCCGGATCAGACTCCATACCTTCAATACATGACGCTGCCGCTGGCCGCCAACGCGTCTCAGGCTCTAGACGGCTTCTTCATCACTCCTGAGCAGTCTACCACGCAAGAGCTGCATGAATTTCAGCCGGAGAAGCCGGAGACGTTGCCAGAACAACAGCAGCAGCTTCCACCACTTCCTCCGCTGCAGCCGCAACGCAAAGATGAGGATGCTCTCAACTCAGATGAGGAGAACTACCTCCAAATGGTGGTCTTCCAAACCTCGACAGCGTCTTCTGGACGCCATGTTTGTAACCTCTGTCATAAAGAGTTCAAGCATGCGAGGTGGCTAAAGCAGCACATGAGATCCCATAGCAACTGGATTAAGGCGAACTGCAAGAAGCCACCGATGTGCCCGATTTGTGAGAGGACTTTTAAGGGTCCAGGTATGTTGAAAATGCACATGCGTACCCACGAACAGCGACCACCTAAACAGCCAACTTGCTCCGTCTGCCAGCGGACCTTCCAGACGAAAACCTTACTCTACCGCCACAGGCAAACCCACTTCGAGCAGAAAACCCACCAGTGTACTGTTTGCGAGAAACGTTTCTACAGCGGATACGCGCTGCGGTCGCATATGGCCAGGCATTGGGGGGAGAGGCCGTACGTTTGCTCCATGTGTTCGAAGAGCTTCTACAATCCGACGGATTTGAAGGTACACTTCCGTCTTCATACCGGGGAAAAACCGCTCAAGTGCGCCGAATGCAACAAGACCTTCCGCCGCCACTCCACGCTCTGCCAGCACATGAAGAAGCACCGCGGCATCCGCAATCACGTCTGTGTTATATGTAGCAAGGGCTTCTATGAGGTGTCCAAGCTCAATGCTCATATGAGAGTTCACACAGGCGAGCGTCCATTCGAATGCCAGTTCTGCGAGCGCAAGTTCGCGCAGCACTCGGCGCTGATCTACCACCGCCGCACGCACACGGGCGAGAAGCCGTACAGCTGCAAGATGTGTACCGCCAGGTTCACTACCTCGTCCGCGAGGAATAACCATATGCTGACTCATGGAGGGGTTAAGAAATTTGTCTGCACAATCTGCCTGAAAGGCTGCACGTCGCGCACGGAGCTGCGCGTGCACACGAGCAAGCACACGGGCGACAAGTTGTATGCCTGCGAGACTTGTGGGCAGCGGTTCAGTTCCGCTTCGTATTTAGCGGTGCATCGCCGCAATCATGCGAACGATAAGAAATACCAGTGCAGCGTTTGTGGGAAAGGATACATCGAATTGAACTCGTACAAGAAACATTTAAAAACACACGAAGTGAAAGCTGATCCCGAATCGTCTGACAACAGTAACGAAACTCCTCAAGCGAGCATGCCCAAACTTAGCGAAAGCGATAACGAATCCAATGCCAACGAAACGCAGACGCAAAGCGAAAAATCTCAGGACCAAAGTCAAAATGCTCAAGGTCAAAGTGAGAACGCTCAAGGTCAAAGTCAGACACCTCAAACCCAAAGTGAGACACCGGCCCCGCCCCCTAAGAAGTATAGATGTGGGTTATGCGTCAAAACTTACATGTATCTGCATAGTTTGAAGAAACATATGCTTACTCATGTCCAGCAACAACAACAGCTACAAGCCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGGCCACCCAGTAATATCATCTGTACAGTCGTTGCAACTGCAACAGACACAGCAACACGTTAACACGCAACAGCCGCAACAGTTGCAAGTGCAAACAATACAAATACACCCGCAACATCAACCTATACAAATTCATGCGGTAGGCGTACAACAAGTACAACAACAGCAGCTGCACGTGGCCACCTCCTCGTGTCAGACCATGCTGCCTAATATCTTACAGGTGTCGCAGTTACAACCTGGCACGGCGGTGGCAGTGTCAGGGCTGGGCCAAATCGATCAGGGCGTGCCACATCGCATCATCCTACAGCCGCAGACGTCCACGCATCCCGCCGTATATACCATACACCATTAA
- Protein Sequence
- MATPVKPFMKFDKICRTCLQIKKDMRPLFEQLTATMLMTISKAQVAVGDGLPSQLCLQCVHQISRCHAFKEMAERNEITLREQAKAMAEEQLKLAEKDLLPPPDQTPYLQYMTLPLAANASQALDGFFITPEQSTTQELHEFQPEKPETLPEQQQQLPPLPPLQPQRKDEDALNSDEENYLQMVVFQTSTASSGRHVCNLCHKEFKHARWLKQHMRSHSNWIKANCKKPPMCPICERTFKGPGMLKMHMRTHEQRPPKQPTCSVCQRTFQTKTLLYRHRQTHFEQKTHQCTVCEKRFYSGYALRSHMARHWGERPYVCSMCSKSFYNPTDLKVHFRLHTGEKPLKCAECNKTFRRHSTLCQHMKKHRGIRNHVCVICSKGFYEVSKLNAHMRVHTGERPFECQFCERKFAQHSALIYHRRTHTGEKPYSCKMCTARFTTSSARNNHMLTHGGVKKFVCTICLKGCTSRTELRVHTSKHTGDKLYACETCGQRFSSASYLAVHRRNHANDKKYQCSVCGKGYIELNSYKKHLKTHEVKADPESSDNSNETPQASMPKLSESDNESNANETQTQSEKSQDQSQNAQGQSENAQGQSQTPQTQSETPAPPPKKYRCGLCVKTYMYLHSLKKHMLTHVQQQQQLQAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGHPVISSVQSLQLQQTQQHVNTQQPQQLQVQTIQIHPQHQPIQIHAVGVQQVQQQQLHVATSSCQTMLPNILQVSQLQPGTAVAVSGLGQIDQGVPHRIILQPQTSTHPAVYTIHH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -