Csas007813.1
Basic Information
- Insect
- Carposina sasakii
- Gene Symbol
- -
- Assembly
- GCA_014607495.2
- Location
- CP053148.1:10142533-10162995[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.82 64 4.9 2.3 2 20 49 67 48 69 0.92 2 14 0.0004 0.031 15.3 0.0 2 20 82 100 81 104 0.95 3 14 0.16 13 7.1 0.7 2 23 141 162 140 162 0.89 4 14 0.0022 0.17 13.0 1.0 3 22 170 189 169 189 0.95 5 14 0.37 29 6.0 0.1 2 23 227 249 226 249 0.91 6 14 0.024 1.9 9.7 0.5 2 21 255 274 255 275 0.94 7 14 0.00078 0.06 14.4 0.2 1 23 283 306 283 306 0.97 8 14 6.9e-07 5.3e-05 24.0 1.0 1 23 364 386 364 386 0.98 9 14 3.4e-06 0.00026 21.9 3.5 1 23 391 413 391 413 0.98 10 14 9.8e-08 7.6e-06 26.7 0.8 3 23 426 446 425 446 0.98 11 14 1.2e-07 9.7e-06 26.4 0.9 1 23 452 474 452 474 0.99 12 14 3.4e-08 2.6e-06 28.2 0.5 2 23 481 502 481 502 0.97 13 14 1.6e-07 1.3e-05 26.0 0.9 1 23 508 530 508 530 0.99 14 14 0.00012 0.0094 17.0 0.2 1 23 536 558 536 558 0.97
Sequence Information
- Coding Sequence
- ATGAAACCAAAATGTGAATTGGATGAGGCAGGTACAATAGAAGAAGCGTATGATCCGGATGAGAACATGCCCAATATATCTACTCCTGATAAGTCTGAGGCTATCACTGGCGACGAGGGGGACCAATCTGATGATTATAATATGCAGTGTAAAAATTGCTCAGAGTTATTTTCATCTGAAGAACAATTCCATGATCACTTCAATCACAATTGCATATTAGTAAAGTCAGAGCCACAAAATATATATTGTCCTATCTGTGGCCAAATCTTTGGAGATGCCGGCGATCTAACCAGTCACATGTGGGAGCAGCACCCTGAGCTTATGTTTCCTAAGAAACGAGGCCGGCCTAAGAAAACTGTTAAAATGATTAATCAAACTGGAAATAGATTGCACCGGGCAACTAATTCTCACCAGGTTTATGATTGTATTTTTTGTAAACTCGACTTTAAAACCAAAGATGACATCAAATTACACATGTATGAACATAGTGATACAGCAATAAATATATGCCTTATTTGTAAAAAAATGTATATCAGTAGAGACAGCTTTGAAAATCATATGTGTACAGCTGATAAAAACAATATTCCTACCAGGGAAAGAATGAAAAACATGACAGAAATGACCTTACAGGAAATGGTTGGCCCGACTGACAATATGGAAAATATTCATACCCTTCAATCTTGTAAGCTGTGTGGTGGTTTCTTTTTGTCCAAATCGGGCTTATTGGATCATATTGATGAAGAGCATTCAGAAATCTCACGACGCTGCAAATTGTGCAATAAGATATTCGCAAGTCTAAAATCGGCGTCGCGCCATAGAAAAGCATGCGAGTTAGTCGAGAGAAATTATGTTTGTGCCACCTGTGGAATGCAATTCGTATATGAACTGTCGCTTAATAAGCACATTTTAAAGCTTCACAAAGGTGAAAGCGTGAGCGTAAAATTTTTGAATGGTAGTAACAAAAAGTTAGCTAATAAGAGATTAGCCAATGACGTGGTTGATAATGTTATCAATAAGTGTGAAATGACAGTCGACGCGGCGGCCGCGGCGTCTGCTGAGTTACTGGAAGCGGCATCGGCAGTTAAGTTGTACCAATGTGACGTCTGTAACAAATCTTTCCCCAGAAGGGATATGTTGAACAAACATAGCAAGATACATCTAGAAAAAAGTTTTGAATGCGAAGTTTGTCATAGAAAATTTAACAGAAAGGACAATTTACGGTCACACAGCCGCGTGCATGACGCAGGTCGACAGCCAGTGCCGGCGACCAGCCTGTGCCTGTACTGCGGCCGCAGCTTCAACAACTCCTCCAACCTCATCGTGCACATGCGCCGGCACACCGGGGAGAAGCCCTACACCTGCGACTTCTGCGGTAAAGGTTTTCCTAGATCTTCAGACCTGCAAAGTCATCGACGGTCACACACAGGAGAAAAACCTAATGAATGCGGTGTGTGCGGCAAAGGTTTCTCTCGCAGCAGTAAGCTGACGCGGCACATGCGCGTCCATACTGGACAAAAGCCCTACAAGTGTCCGTTCTGCGACAAAGCGTTCTCGCAGAGCAACGACCTGACCCTCCACGTGCGACGACACACGGGCGACAAGCCCTTCTTCTGTGAGGTCTGCGGCGTACGGTTCATACGGGGTACCGCACTGCAAAATCACCGGCGGGTTCACGGTCACTTCGCTCTAGCCGATTCTCTCCAGCCGCAGATCGAGGTGGTACCAAGGATCAGTCAGATCTTCAGCGTACAAGTCTCTACGGCCTAA
- Protein Sequence
- MKPKCELDEAGTIEEAYDPDENMPNISTPDKSEAITGDEGDQSDDYNMQCKNCSELFSSEEQFHDHFNHNCILVKSEPQNIYCPICGQIFGDAGDLTSHMWEQHPELMFPKKRGRPKKTVKMINQTGNRLHRATNSHQVYDCIFCKLDFKTKDDIKLHMYEHSDTAINICLICKKMYISRDSFENHMCTADKNNIPTRERMKNMTEMTLQEMVGPTDNMENIHTLQSCKLCGGFFLSKSGLLDHIDEEHSEISRRCKLCNKIFASLKSASRHRKACELVERNYVCATCGMQFVYELSLNKHILKLHKGESVSVKFLNGSNKKLANKRLANDVVDNVINKCEMTVDAAAAASAELLEAASAVKLYQCDVCNKSFPRRDMLNKHSKIHLEKSFECEVCHRKFNRKDNLRSHSRVHDAGRQPVPATSLCLYCGRSFNNSSNLIVHMRRHTGEKPYTCDFCGKGFPRSSDLQSHRRSHTGEKPNECGVCGKGFSRSSKLTRHMRVHTGQKPYKCPFCDKAFSQSNDLTLHVRRHTGDKPFFCEVCGVRFIRGTALQNHRRVHGHFALADSLQPQIEVVPRISQIFSVQVSTA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00276688;
- 90% Identity
- iTF_00276688;
- 80% Identity
- -