Basic Information

Insect: Carposina sasakii
Gene Symbol: ZEB2
Assembly: GCA_014607495.2
Location: CP053178.1:291614-296156[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.2e-05 0.00092 20.2 0.4 1 23 195 217 195 217 0.98

2 14 0.0069 0.54 11.4 3.5 1 23 223 246 223 246 0.94

3 14 0.072 5.6 8.3 0.0 1 23 252 274 252 274 0.97

4 14 2.8e-06 0.00021 22.1 2.0 1 23 279 301 279 301 0.99

5 14 7.4e-06 0.00057 20.8 2.6 1 23 307 329 307 329 0.97

6 14 2.2e-07 1.7e-05 25.6 0.3 1 23 335 358 335 358 0.96

7 14 4e-06 0.00031 21.6 2.0 1 23 364 386 364 386 0.98

8 14 4.4e-06 0.00034 21.5 1.1 1 23 392 414 392 414 0.98

9 14 0.00013 0.01 16.8 2.8 1 23 420 442 420 442 0.99

10 14 1.4e-07 1.1e-05 26.2 0.7 1 23 448 470 448 470 0.98

11 14 4.1e-06 0.00032 21.6 0.9 1 23 476 498 476 498 0.97

12 14 0.11 8.5 7.7 3.2 1 23 504 523 504 523 0.94

13 14 4.8e-07 3.7e-05 24.5 0.4 1 23 529 551 529 551 0.98

14 14 0.00022 0.017 16.2 2.9 1 23 557 579 557 579 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.2e-05	0.00092	20.2	0.4	1	23	195	217	195	217	0.98
2	14	0.0069	0.54	11.4	3.5	1	23	223	246	223	246	0.94
3	14	0.072	5.6	8.3	0.0	1	23	252	274	252	274	0.97
4	14	2.8e-06	0.00021	22.1	2.0	1	23	279	301	279	301	0.99
5	14	7.4e-06	0.00057	20.8	2.6	1	23	307	329	307	329	0.97
6	14	2.2e-07	1.7e-05	25.6	0.3	1	23	335	358	335	358	0.96
7	14	4e-06	0.00031	21.6	2.0	1	23	364	386	364	386	0.98
8	14	4.4e-06	0.00034	21.5	1.1	1	23	392	414	392	414	0.98
9	14	0.00013	0.01	16.8	2.8	1	23	420	442	420	442	0.99
10	14	1.4e-07	1.1e-05	26.2	0.7	1	23	448	470	448	470	0.98
11	14	4.1e-06	0.00032	21.6	0.9	1	23	476	498	476	498	0.97
12	14	0.11	8.5	7.7	3.2	1	23	504	523	504	523	0.94
13	14	4.8e-07	3.7e-05	24.5	0.4	1	23	529	551	529	551	0.98
14	14	0.00022	0.017	16.2	2.9	1	23	557	579	557	579	0.97

Sequence Information

Coding Sequence: ATGAGCTTGTGTAGTGTTAATGGCTTATGCCGTTGTTGTTTATCTGAGGGCACTTTCAAGAGCCTGGGAGTTCCATATTTCGTTGGCGACGCAGAAGAAATTTACTCAGTTCTGTTACGCGATACTTTTAATATTATCATAGCGCCATTAACTGGGCAGTCGAGTGCGGGATCTTACACAATATGCGACGTGTGCGTGCCGCGGCTGCGGGATGCGGCCCAGTTCCGACGGCAGGTGCTCCAGTGTGAACAAACATTTGCCCAGTTTTACATCAGTGGCCAGAAAGATTTCAAAAAAGAGACTCATAATGTAACAGAAGTTAATGATTTTGAATACAGTGAGAAAGATGAGGCAATCACAGAAGAATCGTTGAAGCAGGAATCCAATGACAGTTTAAAAGAGGACTCACATAATCTGCAAGATAATGACTTTGAATACAGCGATGAAGATGACAAAACGACCACCATGGATATATTCATTGAGCCGGCCGCAGTGCGCCGGCGCACGAGACGCGCGCGACCTCGGAGCGACTCCAGCGACGAGGAAGACTCAAAGCCGCTAATCAACGCGAAAATAAAGAAGTTCAACTGCGAAGTGTGCCAAAAGAAATTCGCGTATTTCGGAGCCCTAGAAGTGCACATGAAAACTCATAGTGGAGAAAATACGTATGTCTGCCACATCTGCAACACAAAACATAAAAGAAACAGGGATCTGACCAAACATATAGAGGCCAACCATTGTAACGATGGGAAATATCCATGTACGATATGCGTGGAAGTTTTAGAGGCAGCTACGTTGTTAAAAAATCATTTGGAAAAGCATTTTGAGGAAAAATTCAAATGTTCGCTTTGCAGTAAGGAGTTTGTTCGCAAAAAAGGCTTGAAAGAGCACATGAAAATGCACACCGGCGAACGGAGGTTCGCGTGTGATATCTGTCAAAAATCCTTCTACCATAACCAAACGTTAAAATCGCATATATTAACACACACCGGTGAAAAACCTTATGTGTGCGATGTTTGTGGACGTAGTTTCCCCCAAAGGGCACATTTAAAACGCCATATAGTTATGATACACAGCGGTGTCAAGCCATATACATGTAAAATTTGCAACAAAAAATTCTCAAGCAAAAGCTATTTAGGTATACACGAGAGACAGCATACCGGTGAAAAACCGTACTCATGCGATGTGTGTAAGAAGAATTTTAGAGCTAATACCACTTTAAAGGTTCATATGAGAGTGCACACCGGTGATAAACCGTATACATGCAATTTTTGTAACAGACAGTTCGCTCAAATGTCCAGTTTTAGACTCCACGAGCGGACTCACACCGGTGAAAAACCATTTTCCTGTACAGTATGCAAAAAACCTTTTTCTGACAAAGGCTATTTGAGAATCCACATGAGAGTGCATACCGGTGAAAAGCCTTTTATGTGTGATGTCTGCAACCGTAGTTTTAGAGAAACGGGACAGTTGAAAAGACATATGACTGTGCACACTGGTATTAAACCGTTTACTTGTAAAATCTGTAATAAACAGATAGGGAATTTATCCAAACACATGAGAGTACATAGCGATGAGAGACCATACAACTGTAATATATGCAACAAACAGTTTGCAGTTAATGGTAACCTAAAGTTGCATATGCGTATACATACTGGTGAAAAACCGTTTGCCTGTGACGTATGCAGCAGTCAATTCTCTCAGAGCAGTGGATTAAAACGACATCGATGCACGCATATGGGTAAGCTTATGTAG
Protein Sequence: MSLCSVNGLCRCCLSEGTFKSLGVPYFVGDAEEIYSVLLRDTFNIIIAPLTGQSSAGSYTICDVCVPRLRDAAQFRRQVLQCEQTFAQFYISGQKDFKKETHNVTEVNDFEYSEKDEAITEESLKQESNDSLKEDSHNLQDNDFEYSDEDDKTTTMDIFIEPAAVRRRTRRARPRSDSSDEEDSKPLINAKIKKFNCEVCQKKFAYFGALEVHMKTHSGENTYVCHICNTKHKRNRDLTKHIEANHCNDGKYPCTICVEVLEAATLLKNHLEKHFEEKFKCSLCSKEFVRKKGLKEHMKMHTGERRFACDICQKSFYHNQTLKSHILTHTGEKPYVCDVCGRSFPQRAHLKRHIVMIHSGVKPYTCKICNKKFSSKSYLGIHERQHTGEKPYSCDVCKKNFRANTTLKVHMRVHTGDKPYTCNFCNRQFAQMSSFRLHERTHTGEKPFSCTVCKKPFSDKGYLRIHMRVHTGEKPFMCDVCNRSFRETGQLKRHMTVHTGIKPFTCKICNKQIGNLSKHMRVHSDERPYNCNICNKQFAVNGNLKLHMRIHTGEKPFACDVCSSQFSQSSGLKRHRCTHMGKLM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -