Basic Information

Insect: Carposina sasakii
Gene Symbol: -
Assembly: GCA_014607495.2
Location: CP053157.1:4732325-4756303[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 9.1e-05 0.007 17.4 1.5 1 23 404 426 404 426 0.96

2 20 0.01 0.8 10.9 0.9 1 20 432 451 432 454 0.93

3 20 9.7e-06 0.00075 20.4 3.4 1 23 473 495 473 495 0.98

4 20 0.00019 0.015 16.4 4.5 1 23 501 523 501 523 0.99

5 20 5.8e-05 0.0045 18.0 5.1 1 23 529 551 529 551 0.97

6 20 1.2e-05 0.00093 20.1 7.3 1 23 557 579 557 579 0.97

7 20 5.5e-07 4.3e-05 24.3 3.1 1 23 585 607 585 607 0.98

8 20 0.00011 0.0083 17.1 6.7 1 23 613 635 613 635 0.97

9 20 0.00011 0.0082 17.2 6.5 1 23 641 663 641 663 0.97

10 20 5.1e-07 4e-05 24.4 1.9 1 23 669 691 669 691 0.98

11 20 1e-05 0.00079 20.4 7.7 1 23 697 719 697 719 0.98

12 20 8.3e-06 0.00065 20.6 6.6 1 23 725 747 725 747 0.98

13 20 2.8e-05 0.0022 19.0 7.6 1 23 753 775 753 775 0.98

14 20 3.4e-05 0.0026 18.7 4.3 1 23 781 803 781 803 0.97

15 20 2.7e-06 0.00021 22.2 5.1 1 23 809 831 809 831 0.97

16 20 2.4e-06 0.00019 22.3 5.6 1 23 837 859 837 859 0.98

17 20 0.00015 0.012 16.7 8.1 1 23 865 887 865 887 0.97

18 20 1.1e-05 0.00089 20.2 4.7 1 23 893 915 893 915 0.96

19 20 0.011 0.88 10.8 0.5 1 23 922 944 922 944 0.93

20 20 0.0032 0.25 12.5 5.0 1 23 953 975 953 975 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	9.1e-05	0.007	17.4	1.5	1	23	404	426	404	426	0.96
2	20	0.01	0.8	10.9	0.9	1	20	432	451	432	454	0.93
3	20	9.7e-06	0.00075	20.4	3.4	1	23	473	495	473	495	0.98
4	20	0.00019	0.015	16.4	4.5	1	23	501	523	501	523	0.99
5	20	5.8e-05	0.0045	18.0	5.1	1	23	529	551	529	551	0.97
6	20	1.2e-05	0.00093	20.1	7.3	1	23	557	579	557	579	0.97
7	20	5.5e-07	4.3e-05	24.3	3.1	1	23	585	607	585	607	0.98
8	20	0.00011	0.0083	17.1	6.7	1	23	613	635	613	635	0.97
9	20	0.00011	0.0082	17.2	6.5	1	23	641	663	641	663	0.97
10	20	5.1e-07	4e-05	24.4	1.9	1	23	669	691	669	691	0.98
11	20	1e-05	0.00079	20.4	7.7	1	23	697	719	697	719	0.98
12	20	8.3e-06	0.00065	20.6	6.6	1	23	725	747	725	747	0.98
13	20	2.8e-05	0.0022	19.0	7.6	1	23	753	775	753	775	0.98
14	20	3.4e-05	0.0026	18.7	4.3	1	23	781	803	781	803	0.97
15	20	2.7e-06	0.00021	22.2	5.1	1	23	809	831	809	831	0.97
16	20	2.4e-06	0.00019	22.3	5.6	1	23	837	859	837	859	0.98
17	20	0.00015	0.012	16.7	8.1	1	23	865	887	865	887	0.97
18	20	1.1e-05	0.00089	20.2	4.7	1	23	893	915	893	915	0.96
19	20	0.011	0.88	10.8	0.5	1	23	922	944	922	944	0.93
20	20	0.0032	0.25	12.5	5.0	1	23	953	975	953	975	0.99

Sequence Information

Coding Sequence: ATGAATCAGGATCACCACTCCATCAATGCGGGTGGTGGCCAGCCTCCTGGAAATTCTGAGTCTCAGAATCAAAGAGTGCAGGCTGGACAGCAACAGCAGCAGGCTGCGTTAACGCCTACTACGTCAGCGACAGACTTGAGAGTCAATTCCGCGGCAGTAAATGTTGCTTTGTCAAGCGTCGCAAAATATTGGGTGTTTACAAATCTTTTCCCCAGTCCAATTCCACAAGTATCTGTGTATGGCTTACCTAGTGGAACAAGGATCGAAAATGGGAAACCAGTCCAGTTGTTACAGGACTTGGGACAGCATGCAAGTATACTAAATGGAGATCCCAACATTATACTGGGACATCATGGAAGCCCCACACAAGTAACAGTATCAGGTGCAGGGACTCAGCAGATCCCTGTATCTCAAATTATTGCCACACAATCTGGACAAAGGCATGAGCTGGTCTCACACACTCAGCAACTTGACCAGAACACAGCACAAGGGTCCACCAACCAGGTTACAGTGACCCAGCAATCAAACCACCAGCAGGGTCATCATTCCCAACAACATTTGCTTCAGCAGCAACTAATAAACGCACGCCCAGAACATGGAAACCAACAGATACAACTGACAGTCAGTGAAGACGGCATAGTAACAGTGGTGGAGCCCGGCGGCGGAAAGCTGGTCGACAAGGAAGAGTTGCATGAAGCTATCAAGATGCCATCTGATCATACACTGACGGTTCATCAGTTGCAACAAATTGTTGGGCAACAGGTGATCGACAGTGTAGTAAGAATAGAACAAGCTACTGGAGAGCCAGCCAACATACTGGTCACTCACAACCCTGATGGAACGACGTCGATAGAAGCTAGCGCCGCCGACCCTCTAATAGTAAAGGATGAAAAAAACTCTTCCAAAATTGAGACCACACAGTTTGCAATACCTGCAGATATTAAAGACTTGAAGGGTATCGATTTGAAGGGTGTAGGAGCGATGGGCATGGAAGGTGCAGTCGTGAAAATATCAGCCGGCACCGACGACATCCATGCCATGTACAAAGTCAATGTGGAAGACCTGTCGCAGCTACTGGCTTACCATGAGGTGTTTGGGAAGCTCAACGCTGCGGATGGGCAGCAGCAGCAAACTAAGGTGGTGGCGGAAGTGGAGATAGAGCCCGGCCCGAGCGCCGCTGTGGCCGAGGCGGACGGCTCGCCCGGACACCACGCCTGCGACATCTGCGGGAAGATATTCCAGTTCCGATACCAGCTTATTGTGCATAGACGTTATCACGGGGAGAACAAGCCGTTCGCGTGCCATGTATGTGGCTCAGCCTTTGCCAACCCTATAGAGCTGTCGAGACATGGAAAGTGCCATCTTGCAGGGGACCCAGTGGAGAGACACAATAAGCGGATAGCACAAGACAAGCCGTATGCCTGCACTACTTGCCAGAAAACATTCTCCCGGAAGGAGCATTTAGACAACCATGTACGAAGCCATACTGGAGAAACACCATACACCTGCCAGTTCTGCGCAAAAACGTTCACGCGTAAGGAGCACATGGTAAACCACGTGAGGAAGCACACGGGAGAGACTCCACACCGCTGTGACATCTGCAAGAAGAGCTTTACGAGGAAGGAGCACTTTCTGAACCACGTCATGTGGCATACAGGTGAAACTCCGCACCATTGTCAAATATGTGGCAAGAAGTATACTAGAAAGGAGCATTTAGTGAACCATATGCGGTCACATACAAACGATACGCCTTTCCGATGCGATTTGTGCGGGAAATCTTTCACGAGGAAGGAGCATTTCACCAATCATATAATGTGGCATACGGGTGAAACGCCCCACCGTTGCGACTTCTGCTCCAAGACGTTCACGCGTAAGGAGCACTTACTGAACCACGTGCGACAACACACAGGGGAATCCCCGCATCGGTGCAATTTCTGCTCCAAATCGTTCACGCGGAGAGAACATTTAGTCAACCATGTGCGGCAACATACAGGGGAAACGCCATTCCAATGCGGCTATTGCCCTAAGGCTTTTACTAGGAAAGATCATTTAGTGAACCACGTCCGTCAACACACCGGTGAATCCCCGCACAAGTGTTCGTATTGCACGAAGTCTTTCACGCGCAAGGAGCATTTGACCAATCACGTGCGACAACACACAGGGGAATCCCCGCATCGGTGCACGTATTGCGCCAAATCCTTCACGAGGAAAGAGCATCTGACCAATCATATTAGACAGCACACCGGAGAAACTCCGCACAAGTGCACGTACTGCCCGCGTGCGTTCACGCGCAAGGAGCACCTCAACAACCACGTGCGACACCACACCGGCGAGATGCCGCACACCTGCTCCTACTGCAGCAAGGCCTTCGTGCGCAAGGAGCATCTCGTCAACCATGTCAGACAACACACTGGAGAGACTCCATACAAGTGCGATTACTGTCCGAAGTCGTTCTCGCGGAAGGAGCATTTAAACAACCACGTCCACTTGCACACCGGCGAAGCGCCGCACAAGTGTCCGTTTTGCTCAAAAAGCTTCTCCAGAAAAGAACATTTGACCAATCACGTCAGAATACACACCGGGGAATCCCCGCACCGATGTTCCTTCTGTCTGAAGACGTTTACACGCAAGGAGCATCTCACGAACCACATGAAGCAGCACACGGGAGACACTACTCATGCGTGCAAAGTGTGCTCCAAGCCGTTCACGAGGAAACAGCATCTTGTCACGCATATGAGATCGCACAGCTGCGGCGACCGGCCGCACACATGCGGCGAGTGCGGCAAGTCGTTCCCGCTGATCGGCAACCTGCTGTTCCACGAACGCTCGCACGCGAAGGCGGGTGGCGCGCGCCCCTACCGCTGCGATGTTTGCGACAAGAACTTTATGTGCAAAGGTCACCTTGCCTCACATAGACGGACGCACAATACCGAGAGCGGTGAGCCTGCCGCCGAAACCGAGGAGTGCGGGGACAAGTGCCAGCTCACGCTCAAAGAGGAGCCAGAGAGTAAACAAGATGTTAGGACTATAATAGCAACAGAAAGCGCGAGTAGACCTGCCACTGAAGTTGTTATTCAAAACGCACAAAATGCACAATCTACCCCCACAGTAATGCAAATTACAAGCCAGCAAGTCCGTACTGGAGCAACAACCAGCAGTAGTGGTGTGACAAGCGCTACGTTTACACACACCGTCGCCGCCCAACACCACCCCGGATCGACCATCCACCATCCCGTGACTGTCAATTACTGA
Protein Sequence: MNQDHHSINAGGGQPPGNSESQNQRVQAGQQQQQAALTPTTSATDLRVNSAAVNVALSSVAKYWVFTNLFPSPIPQVSVYGLPSGTRIENGKPVQLLQDLGQHASILNGDPNIILGHHGSPTQVTVSGAGTQQIPVSQIIATQSGQRHELVSHTQQLDQNTAQGSTNQVTVTQQSNHQQGHHSQQHLLQQQLINARPEHGNQQIQLTVSEDGIVTVVEPGGGKLVDKEELHEAIKMPSDHTLTVHQLQQIVGQQVIDSVVRIEQATGEPANILVTHNPDGTTSIEASAADPLIVKDEKNSSKIETTQFAIPADIKDLKGIDLKGVGAMGMEGAVVKISAGTDDIHAMYKVNVEDLSQLLAYHEVFGKLNAADGQQQQTKVVAEVEIEPGPSAAVAEADGSPGHHACDICGKIFQFRYQLIVHRRYHGENKPFACHVCGSAFANPIELSRHGKCHLAGDPVERHNKRIAQDKPYACTTCQKTFSRKEHLDNHVRSHTGETPYTCQFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFLNHVMWHTGETPHHCQICGKKYTRKEHLVNHMRSHTNDTPFRCDLCGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSYCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLTNHIRQHTGETPHKCTYCPRAFTRKEHLNNHVRHHTGEMPHTCSYCSKAFVRKEHLVNHVRQHTGETPYKCDYCPKSFSRKEHLNNHVHLHTGEAPHKCPFCSKSFSRKEHLTNHVRIHTGESPHRCSFCLKTFTRKEHLTNHMKQHTGDTTHACKVCSKPFTRKQHLVTHMRSHSCGDRPHTCGECGKSFPLIGNLLFHERSHAKAGGARPYRCDVCDKNFMCKGHLASHRRTHNTESGEPAAETEECGDKCQLTLKEEPESKQDVRTIIATESASRPATEVVIQNAQNAQSTPTVMQITSQQVRTGATTSSSGVTSATFTHTVAAQHHPGSTIHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -