Csas001910.1
Basic Information
- Insect
- Carposina sasakii
- Gene Symbol
- -
- Assembly
- GCA_014607495.2
- Location
- CP053170.1:6005379-6005966[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.2e-06 0.00019 21.7 0.7 2 40 16 52 15 57 0.71
Sequence Information
- Coding Sequence
- ATGGTGTATAAGTATAAGCGGAAGACGGATCGGGCCAGTTGGTCCGAAGAAAATTTGGCGAAGGCAATTGAAGAAGCCAAAATTACTTCAAAATTAAGTGCAAGTAAGAAGTATGGAATTCCATATGCAACATTACATAGACATATTAAGAGTGGTTCTACTGAAAAGAAATTGGGCCGGTTTCAAACTGTTTTTACGCTGGAGGAGGAAGAAGAACTCTTGAAGTATGTTCAAAAGATGGATAGTTTATTCTACGGCGTCACGCGAACCGAGTTTCTGCAAATTGCTGGAGAGTTTGCTAAAAGGAAAGGAAAATCTGGAGTTTTTTCCGGAAATATAGCTGGAAAGGGGTGGTTCAAAAATTTCAGGCTTCGCCATCCAACACTGACTTTGAGATCACCTGAACCCACATCTCTTGCTCGAGTCAGAGGGTTTAATCGCGTAGCTGTTAATAGATTTTATTCTTTGTTGGAAGAAGTCGTAGAAAAATACAAATTCGCACCGGATATGATTTTTAACATGGACGAAACGGGAGTGAGAACTTGTTCAACAAGACCACCTAAAGTTCTGTCAACCAGGTTGGAGTAG
- Protein Sequence
- MVYKYKRKTDRASWSEENLAKAIEEAKITSKLSASKKYGIPYATLHRHIKSGSTEKKLGRFQTVFTLEEEEELLKYVQKMDSLFYGVTRTEFLQIAGEFAKRKGKSGVFSGNIAGKGWFKNFRLRHPTLTLRSPEPTSLARVRGFNRVAVNRFYSLLEEVVEKYKFAPDMIFNMDETGVRTCSTRPPKVLSTRLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00276355;
- 90% Identity
- iTF_00276355;
- 80% Identity
- -