Csas018070.1
Basic Information
- Insect
- Carposina sasakii
- Gene Symbol
- -
- Assembly
- GCA_014607495.2
- Location
- CP053159.1:3638766-3640469[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.2e-07 0.0001 22.5 0.0 2 36 15 49 14 56 0.90 2 2 2.4 3.9e+02 1.5 0.0 21 29 354 362 353 363 0.91
Sequence Information
- Coding Sequence
- ATGTCGTGTAAACTAAAACAACCCACTAGACAGCAATGGGACAAGGACTCGATGACTATGGCTATACTAGCCATAAAAGAACAACAAATGGGTTACTTAAAAGCGTCGAAAACGTTTGGTGTACCAAAAACGACACTAATACGCTTATGTCAACAAGAAAACAAGCCGCTAGAAGAGGTTACCAATTTGAAACTCGGTCGAAAAGCTACTTTTTCTGATAAATTTGAGACCGATTTGGTGGAATATGTACTTGCAATGGAGGCTTCAGGGTTTGGTTTGACACGGCGTGATATCATGAAACTAGCATATCAGTTAGCCGAAAGAAATAAAATAAAACATAATTTTTCAAACGATAAACAATCTGCTGGAAAGACGTGGCTGCGTTTGTTTCTCCAAAGACATCCAGAAGTGTCCTTCCGTCGTCCCACAGGCACGTCTATTGCTAGATTTAGAGGTTTTAACAAGGAAGATGTTGATAACTTTTTTACATTACTGGAAACAGCAATGGACCAAAACCACTACCCTGCCAATAACGTCTACAATGTAGATGAGACTGGAATATCAGTTGTGCCTGCGAAGTTGCCCGAAGTATTGGCTAAGAGGGGTAAAAGGCAAATTGCAGCAACGACCTCGGCAGAACGAGGCTCAACTGTTACTTGTATCATGTGCAACTCAGCAAGTGGTACATATGTGCCGCCGATGATGATATTTCCGCGGAAACGAGACCATCCACTTTTAATGAAAGGGGCTCCACCCGGTGCAATCCACGCATGCCACCCATCAGGATGGGTTCAGATCGACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGGGTCCATTTAAAAAATACTTCACTGAAGAAATTCGCCAATGGATGCGAAATAAAGTTCAAGCCGCTACGCACTATGATATTGCAGAATTATTCGGTCGTGCTTACATAAAATCACAGCGTGCTGATCTTGCTATCAATGGTTTCCGTACCACAGGAATTTACCCGATAGACAGAAGTGTTTTTCAAGACCATGATTTCATTGATATTGAGTCCTCGAATGAAGTTTCCGCTGTCAATGCTCAACCTCAGTCAGCAGATAGCCTTCAAACTCTATTAACTTCAGTTACTCCAGAAGATAATAATGTAGAATATGACTCAGATAGAACTTTCATAGATGAAACGGACTTAAATGAACCAATCTTCAACTTACCTCATTCGAGCAGTAACGACGACGTAGCAGTTGGTCTAGAAGATACGACAAATACATCTCAAATTACTAGTGTTATTCAAGTTTCATCTTTGGTACAATTATCAATGGCAGCAACTTCTGAAATATTGGTCCCCTATAAGCCTCCAGAACATAAACCAGACACACCAAATGCAACTCATGTTTCTAAATTCCTTAATGTATCCGACATTGCCGAGCCTTCAGCATCTACCACTTACTTATCACCACAACAAATAGCAGAGCCTTCAACATCTATCTCTTACTTATCACCACAACAATTGTTTCCTGTACCAAATATAAGAAAAAAAAAGTAG
- Protein Sequence
- MSCKLKQPTRQQWDKDSMTMAILAIKEQQMGYLKASKTFGVPKTTLIRLCQQENKPLEEVTNLKLGRKATFSDKFETDLVEYVLAMEASGFGLTRRDIMKLAYQLAERNKIKHNFSNDKQSAGKTWLRLFLQRHPEVSFRRPTGTSIARFRGFNKEDVDNFFTLLETAMDQNHYPANNVYNVDETGISVVPAKLPEVLAKRGKRQIAATTSAERGSTVTCIMCNSASGTYVPPMMIFPRKRDHPLLMKGAPPGAIHACHPSGWVQIDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGPFKKYFTEEIRQWMRNKVQAATHYDIAELFGRAYIKSQRADLAINGFRTTGIYPIDRSVFQDHDFIDIESSNEVSAVNAQPQSADSLQTLLTSVTPEDNNVEYDSDRTFIDETDLNEPIFNLPHSSSNDDVAVGLEDTTNTSQITSVIQVSSLVQLSMAATSEILVPYKPPEHKPDTPNATHVSKFLNVSDIAEPSASTTYLSPQQIAEPSTSISYLSPQQLFPVPNIRKKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -