Csas011292.1
Basic Information
- Insect
- Carposina sasakii
- Gene Symbol
- -
- Assembly
- GCA_014607495.2
- Location
- CP053155.1:13392872-13400324[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.5e-10 9.1e-08 32.3 0.0 4 39 172 208 169 212 0.89 2 4 6.8e-11 1.1e-08 35.2 0.2 2 39 224 261 223 265 0.94 3 4 1.4e-13 2.4e-11 43.8 0.2 4 45 281 323 278 323 0.96 4 4 5.4e-17 8.9e-15 54.8 0.0 1 44 330 374 330 375 0.97
Sequence Information
- Coding Sequence
- ATGCCAAGTAATAAATTGCCGTCAGTAAAATGCGAGTCCACATCTGACGAAGAAGATTGTTCCCGGTTTCCTAACGTTATTTTTTGTAATCAGCTTGTGACATCTGATTCAGGTCCATTAAAAACAGAAACAGATGTTTCTCATGAAGACGCGCCTTCACAACTATTGCAACATTTACAGGCCTCGCCCCTGGAGGAGCTGGTGCTCACGCCGGCGGGCCCGGCCGCCACGCCCGTGAGCGTCAAGCAGGAGCCGGCAGACATGACCGTCACGCTGGAAACACTGGAGTCCGCGCCGCACGCGCAAGCTGTGGCTTTTGCTTTATTAGGCCGTCACATGGCCACACTCGGATCAAACGACATGCCTGAATCGTCCGACTTTATTCCTCTTATGTCTGTAAAGGACGAACCTTTATCCGAAGGAGAGCAACAGCAGCTAAGCGGCGACGATACTAGCGACTCCTGCAGCCCGCGGGCGGAAGCACGCGGCTCAGCCAAGGCCTGGACCCAGCGAGACATGGAGACCGCACTCGAGGCTCTTAGGTCCCACAACATGAGCCTTACTAAGGCATCCATGACATATGGCATCCCGTCGACGACGCTGTGGCAGCGCGCGCACCGACTGGGCATTGACACGCCCAAGAAGGAGAGCACCGCCAAGTCCTGGAGCGATGAGGATCTGAAGGCGGCACTGCTGGCGTTAAGAGCTGGCGCGATATCCGCTAACAAGGCCAGCAAGGCTTATGGCATCCCCAGCAGCACGCTGTATAAAATAGCGCGCCGGGAAGGCATCCGCCTGTCTGCTCCGTTCAACGCGGCCCCGACATCATGGCGCCGCTCTGACCTGGCGCGCGCGCTGTCCGCTATCCGAGCCGGAGCCAGCACCGTGCAGCGCGCCGCCTCGCAGTACGGGATACCTACTGGCACACTTTACGGTCGGTGCAAGCGAGAGGGGATCGAGCTTTCTCGCTCCAACCCCGCACCGTGGACGGAGGATGCCATGGGAGAAGCCCTAGAAGCCGTTAGGATAGGTCAGATGTCCATAAATCAAGCGGCCATTCACTTCAACTTGCCGTACTCCTCGCTATACGGCAGATTCAAACGCTGCAAGTATCAAACGCAGGAACTTCAACATCTAGGCCCCCAAGAACTCCAAGGCAATTCGGAAATGGAACATCATAATCAAATGCAGGAAATACCTCAGTACTACCAACATAACCTACACACAACACACCGCGCTCCCGAACAAGACGTAAGTCAAATAAATCCGTACATCTATCACCCAACTGAGGAGGATCCATCGATGGCTTTAGGTACAATGCTCCAAGATCCGTATAGTACAGGACAAGCGATGTACTATGCTCAAAGCTGTAGTAGTTTGATAAGCTGA
- Protein Sequence
- MPSNKLPSVKCESTSDEEDCSRFPNVIFCNQLVTSDSGPLKTETDVSHEDAPSQLLQHLQASPLEELVLTPAGPAATPVSVKQEPADMTVTLETLESAPHAQAVAFALLGRHMATLGSNDMPESSDFIPLMSVKDEPLSEGEQQQLSGDDTSDSCSPRAEARGSAKAWTQRDMETALEALRSHNMSLTKASMTYGIPSTTLWQRAHRLGIDTPKKESTAKSWSDEDLKAALLALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTSWRRSDLARALSAIRAGASTVQRAASQYGIPTGTLYGRCKREGIELSRSNPAPWTEDAMGEALEAVRIGQMSINQAAIHFNLPYSSLYGRFKRCKYQTQELQHLGPQELQGNSEMEHHNQMQEIPQYYQHNLHTTHRAPEQDVSQINPYIYHPTEEDPSMALGTMLQDPYSTGQAMYYAQSCSSLIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -