Cfug007307.1
Basic Information
- Insect
- Carpatolechia fugitivella
- Gene Symbol
- -
- Assembly
- GCA_951230895.1
- Location
- OX579649.1:3126767-3129863[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2.8 2.5e+02 3.4 1.6 9 23 2 16 1 16 0.94 2 19 0.022 1.9 10.0 1.3 2 23 28 49 27 49 0.96 3 19 0.00029 0.026 16.0 1.4 1 23 59 81 59 81 0.98 4 19 0.024 2.1 9.9 4.5 1 23 105 127 105 127 0.97 5 19 5.2e-05 0.0047 18.3 1.2 1 23 138 160 138 160 0.97 6 19 2e-05 0.0018 19.6 0.5 1 23 168 190 168 190 0.97 7 19 0.013 1.2 10.7 0.2 2 23 210 232 209 232 0.97 8 19 0.033 3 9.4 4.4 1 23 250 272 250 272 0.98 9 19 8.4 7.6e+02 1.9 1.4 1 11 279 289 279 302 0.73 10 19 0.02 1.8 10.1 1.3 2 23 313 335 312 335 0.94 11 19 0.0018 0.16 13.4 0.1 2 23 357 378 356 378 0.95 12 19 7.5 6.7e+02 2.0 0.3 2 20 382 400 381 401 0.78 13 19 0.0005 0.045 15.2 0.9 3 23 461 481 460 481 0.96 14 19 0.066 5.9 8.5 2.4 5 23 491 509 489 509 0.94 15 19 0.0038 0.34 12.4 0.7 2 23 520 542 519 542 0.95 16 19 1.8 1.6e+02 4.0 6.2 2 23 559 577 559 577 0.90 17 19 0.28 25 6.5 2.5 2 23 650 671 649 671 0.94 18 19 0.012 1.1 10.8 1.1 2 23 682 704 681 704 0.96 19 19 4.4 4e+02 2.8 2.4 2 21 742 761 741 762 0.93
Sequence Information
- Coding Sequence
- atGACATTCAAATTCCAATGCCACTACCGCCTCCACATGCGCGGTCACTACAACGACACATCTTTAGACCCGGCTCTGCTGACGTGCCAGCTGTGCGGGCGCCGCTCCAAGCACCTCCGCGCTGCGCAGGCGCACATGAACTACCACAAGCAGACGCGCTTCCGCAACACCGACTACCAGTGCTCCATCTGCAAGCGCGTGTTCGAGCACAGAAAGGTATACTTAGCCCACATGGCCATGCATTACAAGAGAGGCGAAGGGCAAAACGCCATCGTCGGCGACCGCCCGCTCAAAGGTAAGGTCGAAGGCGAGCACCAATGCCCGCAGTGCGGCAAAGTCTGCGACTCGGAGAACTCCCTCAAATGCCACGTGCGTTGGCACTCCTCAAAAACAGCTCTCTTCGGCTCACGACACGAATGCACCATCTGCGGTCTAGTCTTCACCAACAAACGACGCTTAGAAATACACACCAGAGATCATTATGAAGACGAAAACGGACCCTTCAAATGCACTATATGCGGCAAAGGGTACATAGATGAGGATTACTTCAGACGACACGTCAAGGGGCACAATTTCGACCACCAGAGCCATCAGAAGCGAATCGCGAAACTCCGGAAAGATAAAGTCAAGTGTCCTATTTGTACGCGGTACTACCCTAATCTTGTGAAGCTTATCGGGCATTTGAAGCGAACACACCCGGAAAGTAAAATGATTAAGAACGACCCCGACGCGCCTCCTCCGCAATATTTCAGCTGCAAATTATGTACCAGAGTCTTCCTCACCGAGCACAAGTTGAAGAACCACGAAAAGACACATTTGAGAAAACACGAGTTCTTCAAATGCAAATTCTGCGGTTTGAAAAGCGTTTCGCTGCAAAGACATAGGTTACACGTCAAACAGAGGCACTTGACGTCTAAGTATTGCGACAATCCGTTGAAATGCCCGTACTGCGAGGACACTTTCATCAGAGGGTACGAGTTACACCACCACGTGAGAGATGTCCACGGGATTGACGAGGCGTGGATCGCTGACCGTACTGAGGAACCCATGGGACCATTAAAGGAACTCCAGTGCTCCATCTGCCTTAAAGTCCTCGCTTCCAAAGGCAACTACGAAAGGCACATCGACTATCACAACTCCTTACGATGCAACTACTGCTTCGACTACTTCAGCTCACTCAAATTCCTCGAAGGCCATCTAGCGTTTAGCTGCGAAAAGAAGAAACTCATTGGTGAGACCGAGACTACTTACCCTAAAAAAGTGAAGTGCCATATTTGCTACAAGGCTTTCCATTTACAAGTGAAAATGGACTGTCATTTGCGAACCCAACACGACATCAAAGTATGCAAAGAAGCATCAGAGGAAAAAGGAGAGATTCTGTGCGACTACTGCTTTAAAACCTTCGAGAATAATTACGCTCTGACACAACACAAAATCTACCATCGGACGATCGGATATTTCGGTTGTATCTACTGTGATAGGAAGTTCAATACCTACGTAATGTTTAACAGACACAAGAAAAACCATCTGTACAGAATGAACCCAGAAGACCCGACGAAATGCGAGCATTGTGACGAAACATTTGTTGTGTTCAGGGATATGATCGATCACATGAAAGATGTCCACGGCGACGATAAAGACTGGGTCATCATGCCGAAGGAGGATACAGAAGAAACGTGCCACATCTGCAAGAAAACGTTCTTCAATTTGCACAGACATCTTGCGTACCATGAAGAGAATAGATGTAAGAAATGTGGCGAGTACTTCCTGTCGAGAATGGACTATGATAGCCATCTGTGTTTCATCGAAAGTGACGACGAAGTTGTAGAAGGAAACGAGAGTGACATTCGGCCTAAATATGAAGAGTGCACATTCTGCTTCAAACCTATCACTAAGAAGAACACTAAGAAACTCCATGACAGCCTGCACGGCGTTTCGGGTGCCATTTCCTGTAGGTTCTGTTCCCATAAATTCAAGACCTTAGATGCGTTCAACATCCACGCATTCTCCCACCGAAGCAGGAAATACCATCAGAAGCCGATCAAATGCCGAATTTGCAAAGAGAAGTTCTTTAGATACGGACCGTTCGTGAAACATATGAAACAAGTGCATAAGTCAAAGAAAAAGATGCACTATCGGGCTGTTGTGAAACCGGAAAGATGCGTTGTATGCGGAGACTACTTCCCGAACCTCCACAACCATTACCGAAGCCATCTGCAAAACCAGTGCCTGCAATGCCGGAAGTATTTCAACTCAGTCAAACTATTTTCGGAGCACCAATGCGATAAAGAAGATGCAGACCCGTCCAAAGTGTTTGTGAGCGACGAAGATTTGCACGCGCTCATAAAATCCTATGTTCCTAAGGATGAGAAAGATGACGAAAAGTTCTACGGTTACACCGACAacgaagaagaagaggaagaagagAACCAAAGCGTACCTGAAATCCAGAATGAGGATAGTCAGAACTCTATGGAAAATGTCATCCAGCAACCCTTCGTGATATCTGACGTACTGTCTCTATACGAGCGTAAGGAGGAGTTGCTCGCGATATATCAGAAAGAGGATCCTAAACAGAAAGAATTGAGTcccaaaaagaaaacaagtccgaaaaagaaagttagtcaaaaaaagaaagaaagtctGAAGAAGAATAGTCCTGAAAAGAATGGAAACGCTGATAAAGACGAGGACGATGACGATAGTGACGTCGAAGTCATTATAATGTTGGATGAAGAAAACGATAATGGCGCGGATAATAGCGAAATTATAACGATAGATCTTGACGACGATTGA
- Protein Sequence
- MTFKFQCHYRLHMRGHYNDTSLDPALLTCQLCGRRSKHLRAAQAHMNYHKQTRFRNTDYQCSICKRVFEHRKVYLAHMAMHYKRGEGQNAIVGDRPLKGKVEGEHQCPQCGKVCDSENSLKCHVRWHSSKTALFGSRHECTICGLVFTNKRRLEIHTRDHYEDENGPFKCTICGKGYIDEDYFRRHVKGHNFDHQSHQKRIAKLRKDKVKCPICTRYYPNLVKLIGHLKRTHPESKMIKNDPDAPPPQYFSCKLCTRVFLTEHKLKNHEKTHLRKHEFFKCKFCGLKSVSLQRHRLHVKQRHLTSKYCDNPLKCPYCEDTFIRGYELHHHVRDVHGIDEAWIADRTEEPMGPLKELQCSICLKVLASKGNYERHIDYHNSLRCNYCFDYFSSLKFLEGHLAFSCEKKKLIGETETTYPKKVKCHICYKAFHLQVKMDCHLRTQHDIKVCKEASEEKGEILCDYCFKTFENNYALTQHKIYHRTIGYFGCIYCDRKFNTYVMFNRHKKNHLYRMNPEDPTKCEHCDETFVVFRDMIDHMKDVHGDDKDWVIMPKEDTEETCHICKKTFFNLHRHLAYHEENRCKKCGEYFLSRMDYDSHLCFIESDDEVVEGNESDIRPKYEECTFCFKPITKKNTKKLHDSLHGVSGAISCRFCSHKFKTLDAFNIHAFSHRSRKYHQKPIKCRICKEKFFRYGPFVKHMKQVHKSKKKMHYRAVVKPERCVVCGDYFPNLHNHYRSHLQNQCLQCRKYFNSVKLFSEHQCDKEDADPSKVFVSDEDLHALIKSYVPKDEKDDEKFYGYTDNEEEEEEENQSVPEIQNEDSQNSMENVIQQPFVISDVLSLYERKEELLAIYQKEDPKQKELSPKKKTSPKKKVSQKKKESLKKNSPEKNGNADKDEDDDDSDVEVIIMLDEENDNGADNSEIITIDLDDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -