Cfug004196.1
Basic Information
- Insect
- Carpatolechia fugitivella
- Gene Symbol
- -
- Assembly
- GCA_951230895.1
- Location
- OX579646.1:15139602-15158587[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 4.7e-05 0.0042 18.4 1.0 1 23 217 241 217 241 0.98 2 14 7.9 7.1e+02 2.0 0.1 6 23 275 293 273 293 0.93 3 14 0.0049 0.44 12.1 0.1 1 23 300 322 300 322 0.98 4 14 0.001 0.094 14.2 0.2 3 23 341 363 339 363 0.91 5 14 4.6e-05 0.0041 18.5 1.1 1 23 369 393 369 393 0.94 6 14 0.00019 0.017 16.5 5.0 1 23 399 421 399 422 0.93 7 14 0.0044 0.4 12.2 2.9 5 23 504 522 501 523 0.93 8 14 0.031 2.8 9.5 5.7 5 23 605 623 593 624 0.94 9 14 0.0044 0.4 12.2 2.9 5 23 706 724 703 725 0.93 10 14 0.0086 0.77 11.3 3.0 5 23 807 825 804 826 0.92 11 14 0.0044 0.4 12.2 2.9 5 23 908 926 905 927 0.93 12 14 0.0044 0.4 12.2 2.9 5 23 1009 1027 1006 1028 0.93 13 14 0.0044 0.4 12.2 2.9 5 23 1110 1128 1107 1129 0.93 14 14 0.082 7.3 8.2 1.6 3 23 1135 1158 1134 1158 0.92
Sequence Information
- Coding Sequence
- ATGTTTGCAGCAGCtgataataataccaaaaaaaggtTTCAGAAACCAAACATTCTGAGGAAAAGTTCTAAACCACCTGCAAAGCATAACACATCTGAATCTCTCAGTGTGAAAAATCTAGTCACAGCTTCCACAGAACAAGAACCAAAGTTCACGGTATTAAAACCCTgtccaaataaaaatatccaGTCCATGCAAAGATTGGTTGTAGACGATACTGTTTGCAATGAAGAGAACAGCATTGGGGAGTTATACCAAATTGATGGGAATGTTGACATGGACAGAAGCTTAGCCGTCACTTGTGATGTTCTCACTAACAACAAGGAAGAAAATGTATTTGAAGCTACAATTAATGTTGATTCATTCATAAATAACAGTGACATGGAACAGaTGGTTTCATTAGCAGACGTTGAAAATGAAATAAGTCGAAGAATGAAACAAGAATGGTGCCTAGATTTTATTAATGATActcaagaaattattattgaagaTATTGATGGATCTCATTTGGGGAGTCTACGGCTGGCGTCATCGCCCGCTAGTTCCGCGGCTCCCGGCGCCGGCGTGACGTCACCGCCCGCCCTGCCGCACACTGCCGCAGCCCCTACACAAAATATCACATTAGAGTACATGAACTGCACTATGAATTTTAAGTGTAATATCCCAAACTGCTCAAAGCGGTTTCGAAGCGAAGAAGCGCTGAATAAGCACCAGAGCACGCATACTAAAGCAGCTAAAGTGAAAATGGGCGGCAAGTCGGACAAGCCAGTAGTCATAGAGTGTCCCGTGAAGAAAGTGTTCGCTAACGGCGTCGAGGAGAGCTGTGGGGTGCAGTGCAGCAGTAAGAAGGACATCATCAACCATCTGAACGAAGCTCACGACCCTGAGGATGCTATGTACATTTGCGCCGAGTGTGGTCGTCGTTTCTACTGGGCAGCGGGTCTGCGCGCGCACTCTCGCACGCACCtgcggggcgcggggggcgctGGGGGTGCGGAGGGTGCGGGGGGCGCGTGGGCGTGCGGCTGGGCGGGCTGCGATCGCGTGTTCCGCCAGCCCTGCCGCCTGCGCGAGCACATGCGCGCGCACACCGGCGACAAACCCTATCCCTGCAGGCATCCGAACTGCGGTTGGTCGTTCCGCACGGCGAGCAAGCTGTTACGTCACGCGCGTCGGCACACGGGCGAGCGACGTCACGCGTGCGAGCAGTGCGGCCGCGCCTTCCGCCGCCGCGAGCACCTGCGCGACCACACCGCGCGCCACCACGCACACAAGCGCGCCTGCACGCACACAGGTACTCACACGTACAGTGCGGCCGCGCCTTCCGCCGCCGCGAGCACCTGCGCGACCACACCGCGCGCCACCACGCACACAAGCGCGCCTGCACGCACACAGGTACACACACGTACAGTGCGGCCGCGCCTTCCGCCGCCGCGAGCACCTGCGCGACCACACCGCGCGCCACCACGCACACAAGCGCGCCTGCACGCACACAGGTACACACACGTACAGTGCGGCCGCGCCTTCCGCCGCCGCGAGCACCTGCGCGACCACACCGCGCGCCACCACGCACACAAGCGCGCCTGCACGCACACAGGTACACACACGTACAGTGCGGCCGCGCCTTCCGCCGCCGCGAGCACCTGCGCGACCACACCGCGCGCCACCACGCACACAAGCGCGCCTGCACGCACACAGGTACTCACACGTACAGTGCGGCCGCGCCTTCCGCCGCCGCGAGCACCTGCGCGACCACACCGCGCGCCACCACGCACACAAGCGCGCCTGCACGCACACAGGTACTCACACGTACAGTGCGGCCGCGCCTTCCGCCGCCGCGAGCACCTGCGCGACCACACCGCGCGCCACCACGCACACAAGCGCGCCTGCACGCACACAGGTACTCACACGTACAGTGCGGCCGCGCCTTCCGCCGCCGCGAGCACCTGCGCGACCACACCGCGCGCCACCACGCACACAAGCGCGCCTGCACGCACACAGGTACACACACGTACAGTGCGGCCGCGCCTTCCGCCGCCGCGAGCACCTGCGCGACCACACCGCGCGCCACCACGCACACAAGCGCGCCTGCACGCACACAGGTACACACACGTACAGTGCGGCCGCGCCTTCCGCCGCCGCGAGCACCTGCGCGACCACACCGCGCGCCACCACGCACACAAGCGCGCCTGCACGCACACAGGTACACACACGTACAGTGCGGCCGCGCCTTCCGCCGCCGCGAGCACCTGCGCGACCACACCGCGCGCCACCACGCACACAAGCGCGCCTGCACGCACACAGGTACACACACGTACAGTGCGGCCGCGCCTTCCGCCGCCGCGAGCACCTGCGCGACCACACCGCGCGCCACCACGCACACAAGCGCGCCTGCACGCACACAGGTACACACACGTGCAGTGCGGCCGCGCCTTCCGCCGCCGCGAGCACCTGCGCGACCACACCGTGCGCCACCACGCACACAAGCGCGCCTGCACACACACAGGTACACACACGTATAGTGCGGCCGCGCCTTCCGCCGCCGCGAGCACCTGCGCGACCACACCGCGCGCCACCACGCACACAAGCGCGCCTGCACGCACACAGGTACACACACGTGCAGTGCGGCCGCGCCTTCCGCCGCCGCGAGCACCTGCGCGACCACACCGTGCGCCACCACGCACACAAGCGCGCCTGCACGCACACAGGTACACACACGTGCAGTGCGGCCGCGCCTTCCGCCGCCGCGAGCACCTGCGCGACCACACCGCGCGCCACCACGCACACAAGCGCGCCTGCACGCACACAGGTACACACACGTGCAGTGCGGCCGCGCCTTCCGCCGCCGCGAGCACCTGCGCGACCACACCGCGCGCCACCACGCACACAAGCGCGCCTGCACGCACACAGGTACACACACGTGCAGTGCGGCCGCGCCTTCCGCCGCCGCGAGCACCTGCGCGACCACACCGTGCGCCACCACGCACACAAGCGCGCCTGCACGCACACAGGTACACACACGTGCAGTGCGGCCGCGCCTTCCGCCGCCGCGAGCACCTGCGCGACCACACCGCGCGCCACCACGCACACAAGCGCGCCTGCACGCACACAGGTACACACACGTGCAGTGCGGCCGCGCCTTCCGCCGCCGCGAGCACCTGCGCGACCACACTGCGCGCCACCACGCACACAAGCGCGCCTGCACGCACACAGGTACACACACGTGCAGTGCGGCCGCGCCTTCCGCCGCCGCGAGCACCTGCGCGACCACACCGCGCGCCACCACGCACACAAGCGCGCCTGCACGCACACAGGTACACACACGTGCAGTGCGGCCGCGCCTTCCGCCGCCGCGAGCACCTGCGCGACCACACCGCGCGCCACCACGCACACAAGCGCGCCTGCACGCACACAGGCTGTCCCAAGAAATTTCACACTGTGGAAGCGCTTCAAACGCACTTAGAGAGAGTGCATAATGACTTGCGAGAGATAGCTGAACTGTTGGTAGCTACCGCGCCGGATACGCCCTACATCGAATCACGAGAGTTGCAGCCAGAACAATACTGTATGGTAAATTTAAACTCGCCAGAACTGGGCGAAGTTACATTAGAAGAAGTAGAGACTACGACAGTACCAACCGACATACACTCTGAAATGCCGCTACAGACGGTAACAGAAACGGATATAACTTTGCAAGCGGAAACGGGGGCAGGATTGATGTTAAGACCGGAAACGGGGATGATGCTGCAATTAAAAGCGGAAGAGGGGGCAATGTGTCTTATGCAGACCGAAGCAGGAATGATGCTACAAACGGGAACAGAAGCTGGAATGATGCTGCAGACAGAAACAGAAACGGGAATGATGCTACAGACAGAAACAGAAACGGGAATGATGCTACAGACGGACACAGAAGCAGGAATGATGTTACGGACAGAGACAGAAGCAGGAATGATGCTGCAGACGGACACGGAGGCTGGGATGCTGCTGCAGCCCGAGGCGGGGGCGGGGTCTCCTCGGGCGGCGCGCACGCACTGCACATGGCCGTTCCCCGCGCGCACGCTCGAGCCGCAAGTCTTCGAGGAAAACGCTAGTCAAGAATATGTTTTGGAAGACGACACAACGGAGGAAATATCAGAGCAATCCGAGAACAACATATTCACGATTAGAAGCGATCTCTTCCTTCACGGGAATGTGCTCAACAATGAAGATAGCGAACAAATGGGTGGCGCGGGCGCGTGCGCAGCGGTTGCGGAGGAGGGGCAGGGCGAGGGGGCTGGGGAGGGGGtggcgcggggggcggggctGCTCGCGGCGGGCGGCGACAGCCTGCTGGACGCGCACCCCACCAGTGATCTCATGCAGGAGGAGTTGATGTATACGGACGCGGCGGTGGACGAGTCTTCGTTCCGCGTGTTTCTGCTCAGCGGGGAGGAACTCAGTTAA
- Protein Sequence
- MFAAADNNTKKRFQKPNILRKSSKPPAKHNTSESLSVKNLVTASTEQEPKFTVLKPCPNKNIQSMQRLVVDDTVCNEENSIGELYQIDGNVDMDRSLAVTCDVLTNNKEENVFEATINVDSFINNSDMEQMVSLADVENEISRRMKQEWCLDFINDTQEIIIEDIDGSHLGSLRLASSPASSAAPGAGVTSPPALPHTAAAPTQNITLEYMNCTMNFKCNIPNCSKRFRSEEALNKHQSTHTKAAKVKMGGKSDKPVVIECPVKKVFANGVEESCGVQCSSKKDIINHLNEAHDPEDAMYICAECGRRFYWAAGLRAHSRTHLRGAGGAGGAEGAGGAWACGWAGCDRVFRQPCRLREHMRAHTGDKPYPCRHPNCGWSFRTASKLLRHARRHTGERRHACEQCGRAFRRREHLRDHTARHHAHKRACTHTGTHTYSAAAPSAAASTCATTPRATTHTSAPARTQVHTRTVRPRLPPPRAPARPHRAPPRTQARLHAHRYTHVQCGRAFRRREHLRDHTARHHAHKRACTHTGTHTYSAAAPSAAASTCATTPRATTHTSAPARTQVLTRTVRPRLPPPRAPARPHRAPPRTQARLHAHRYSHVQCGRAFRRREHLRDHTARHHAHKRACTHTGTHTYSAAAPSAAASTCATTPRATTHTSAPARTQVHTRTVRPRLPPPRAPARPHRAPPRTQARLHAHRYTHVQCGRAFRRREHLRDHTARHHAHKRACTHTGTHTYSAAAPSAAASTCATTPRATTHTSAPARTQVHTRTVRPRLPPPRAPARPHRAPPRTQARLHAHRYTHVQCGRAFRRREHLRDHTVRHHAHKRACTHTGTHTYSAAAPSAAASTCATTPRATTHTSAPARTQVHTRAVRPRLPPPRAPARPHRAPPRTQARLHAHRYTHVQCGRAFRRREHLRDHTARHHAHKRACTHTGTHTCSAAAPSAAASTCATTPRATTHTSAPARTQVHTRAVRPRLPPPRAPARPHRAPPRTQARLHAHRYTHVQCGRAFRRREHLRDHTARHHAHKRACTHTGTHTCSAAAPSAAASTCATTLRATTHTSAPARTQVHTRAVRPRLPPPRAPARPHRAPPRTQARLHAHRYTHVQCGRAFRRREHLRDHTARHHAHKRACTHTGCPKKFHTVEALQTHLERVHNDLREIAELLVATAPDTPYIESRELQPEQYCMVNLNSPELGEVTLEEVETTTVPTDIHSEMPLQTVTETDITLQAETGAGLMLRPETGMMLQLKAEEGAMCLMQTEAGMMLQTGTEAGMMLQTETETGMMLQTETETGMMLQTDTEAGMMLRTETEAGMMLQTDTEAGMLLQPEAGAGSPRAARTHCTWPFPARTLEPQVFEENASQEYVLEDDTTEEISEQSENNIFTIRSDLFLHGNVLNNEDSEQMGGAGACAAVAEEGQGEGAGEGVARGAGLLAAGGDSLLDAHPTSDLMQEELMYTDAAVDESSFRVFLLSGEELS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -