Cfug026301.1
Basic Information
- Insect
- Carpatolechia fugitivella
- Gene Symbol
- -
- Assembly
- GCA_951230895.1
- Location
- OX579666.1:3030062-3046822[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.59 53 5.5 1.7 1 19 272 290 272 293 0.90 2 12 0.012 1.1 10.8 0.3 1 23 302 324 302 324 0.97 3 12 0.0012 0.11 14.0 2.4 1 23 340 362 340 362 0.98 4 12 8.4 7.6e+02 1.9 0.3 2 20 398 416 397 420 0.75 5 12 1.6 1.4e+02 4.2 3.0 1 19 428 446 428 447 0.88 6 12 0.0054 0.49 11.9 3.0 1 23 458 480 458 480 0.98 7 12 0.0017 0.15 13.5 4.4 1 23 496 518 496 518 0.98 8 12 8.4e-05 0.0076 17.6 0.0 1 23 528 550 528 550 0.95 9 12 5.1e-06 0.00046 21.4 4.7 1 23 556 578 556 578 0.99 10 12 0.00012 0.011 17.1 0.6 1 23 584 606 584 606 0.98 11 12 0.00063 0.056 14.9 0.9 1 23 612 635 612 635 0.96 12 12 4.4e-05 0.004 18.5 0.3 1 23 641 664 641 664 0.98
Sequence Information
- Coding Sequence
- ATGACTGACTAcgacaaaatattaaacaatgtGTTATATACTCGAGAGTACTTCCAACAAGAGGATATTTGCAGACTTTGCTGGTCAAAGGATGCTAGCAATGTACTTTTCTCTCGAATGATATTATGcactttgaaaaatcctttgtttttcaaagtacagAGCTGTGTCGGTATAGATCTGTCTGAAGACGATTCAGAGTACCACCCGCGAAAGATTTGTGAGAAATGTTTCTTGAAAATAGAACAGTTCAATTATTTTAAAGCATTTTGTCAGAATTCCAACCAAAAATTGAATGCTATCCTAAATGGTACAGAAAACACTGAATCTAAACTCAATTTAGAAAATGTAAATCTCGAAGACccaataaaaattgaaaagatagaAGGTAGCATTATTGATATTATTGACTTAATAGATGCAGAATCTTTAGACAGTTTTCCTGGCAGCTTAAACAATTTTGATACAGAGGTGGAAAGTTGTGAGACTCATGTGGAAAATGTAAAAGAAACTTCAAATATATTTAATCTAAACATCACTGAATCATCACTACCACCAGCAGACCAATCTAgtcagaaaaataatataaaaccatcGCAGACCCctgaaaaaaatgaaatacaGTTTGTTACTCAACCAACATGCAGTTCAAAGAATGTTAGTGAACTAGCTCCTAAGAAAACAACCAGTACTCTTGGTAGGAATTATGAAAGACCTCCAAACTATTGCAAtacatgttttattgatttaaaagatGAAGAAGCATACTTAAATCACAACTCTGAAGCACATGGCATAGAACGAAATGGCAAATTCAGATGTTTTGGCTGCGGCAAACtgtataacaatagaaaaacaAGATTCAGCCATGAGAGTTACTGTTGTAACAGCCTTGAGTTTGGTTTTAAATGCAATATTTGCGGTAGATACTTACCACTAAGAGGTTCTTATGATAGACATATAAATGACCACAGATTGGACAGAGTTAAAGATGAACCAGATGATTCGGGAggcatatttaaatgttataagtGTGATGAAAGATTTACAAGGAGAAGCAAATGGGGCGGACATATGACTAAGCATACACGGGAAGATAGGAAAGGTAAAACTTATAAGACAACATCTAAACAGACACGAAGAAAAAAGTCAAGGACTCATAACAGAAACCCATATGAAAGGTCTCCAACCTATTGTAACACTTGCTTCATTGATTTAAAAGATAAAGAAGCGTACTTAAATCATAACTCTGAAGCACATGGCATAGAAAGAGATGGCAAATTCAGATGTTTTGGCTGCGGCAAACTGTTTCACCATAGGAAGTCAAGGTTAAGTCATGAAGGTTACTCTTGTATGAGTCTTGAGTTTGGTTTTAAATGCAATATATGCGGTAGACACTTACCACTAAGAGGTTCTTACGAGAGACATCTAAATCACCATAGACTCAACAAAATTAAAGATCTGCCCGATGATTCAGCCGGTATtttcaaatgtgaaaagtgcagTGAACGATTTACTAGGAGGAGTGTATGGCATAAACATTTGCTTAAACATAGAAAGGATGGAAGTAAGGAGGAGGCCTTCATTTGTGAGACCTGCGGTAAGGTGTTTGCTCGTCAAGCCTATCTCGACATTCATGCTGCTATCCACTCGGGGATAAAACGATACAAATGCGATCTATGTGACTATCGATGTACGCAGAAAACGAATCTCACTATCCATATGAGGAAACATACGAACGAGCGTCCTTACGCGTGCGACCTGTGCCCACAGCGCTGTGTGTCGGCGTCTAACCTTCTCGCCCACAAGCGCCGACACTTGGGAATCCGCAGGTTCCAGTGTGCATATTGCAACAAAAAGTTCGCCTACAAGCAGACTATGAGCGAGCACATCGCGATTAAACACCAAAAGTCCCAAAGTTACACTTGCCGGATCTGTGGCGCCGAATACGCCGGGCAGAGTGGCTTGAGGAGACATCTACGAAAAAAGCATCCCGAAAACAATTACCTCAACAAACAGAAACCAAGAAACTATGCCGATCCTAACATCGCAGATGAACATCAAAATACTTCAAGTCTGGATCTAAATATTGGAGACGAGGATGGAGAAGAAGTGTTGTACTCAAATGTGAATCATGATTTAAGTAAAGATGGCGAATTGCAAAGAAATTCAGACTTAAACATTCCACAAGGGGACGCATTGTTTAATCTAAATATTGGGGAGAACGAAAAGTTTGTCTGCTTTGAAAAAAGTTTTAGTACAAAAGATGGAGAAGATATGGTAATTGTTCTACAGGAACAAGAataa
- Protein Sequence
- MTDYDKILNNVLYTREYFQQEDICRLCWSKDASNVLFSRMILCTLKNPLFFKVQSCVGIDLSEDDSEYHPRKICEKCFLKIEQFNYFKAFCQNSNQKLNAILNGTENTESKLNLENVNLEDPIKIEKIEGSIIDIIDLIDAESLDSFPGSLNNFDTEVESCETHVENVKETSNIFNLNITESSLPPADQSSQKNNIKPSQTPEKNEIQFVTQPTCSSKNVSELAPKKTTSTLGRNYERPPNYCNTCFIDLKDEEAYLNHNSEAHGIERNGKFRCFGCGKLYNNRKTRFSHESYCCNSLEFGFKCNICGRYLPLRGSYDRHINDHRLDRVKDEPDDSGGIFKCYKCDERFTRRSKWGGHMTKHTREDRKGKTYKTTSKQTRRKKSRTHNRNPYERSPTYCNTCFIDLKDKEAYLNHNSEAHGIERDGKFRCFGCGKLFHHRKSRLSHEGYSCMSLEFGFKCNICGRHLPLRGSYERHLNHHRLNKIKDLPDDSAGIFKCEKCSERFTRRSVWHKHLLKHRKDGSKEEAFICETCGKVFARQAYLDIHAAIHSGIKRYKCDLCDYRCTQKTNLTIHMRKHTNERPYACDLCPQRCVSASNLLAHKRRHLGIRRFQCAYCNKKFAYKQTMSEHIAIKHQKSQSYTCRICGAEYAGQSGLRRHLRKKHPENNYLNKQKPRNYADPNIADEHQNTSSLDLNIGDEDGEEVLYSNVNHDLSKDGELQRNSDLNIPQGDALFNLNIGENEKFVCFEKSFSTKDGEDMVIVLQEQE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00275543;
- 90% Identity
- iTF_00275543;
- 80% Identity
- iTF_00275543;