Cfug032299.1
Basic Information
- Insect
- Carpatolechia fugitivella
- Gene Symbol
- -
- Assembly
- GCA_951230895.1
- Location
- OX579674.1:3236491-3240715[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.23 21 6.8 0.9 3 20 89 106 87 110 0.89 2 19 0.0054 0.48 11.9 0.2 2 23 136 158 135 158 0.93 3 19 8.3 7.5e+02 1.9 6.8 2 23 184 205 183 205 0.96 4 19 0.031 2.7 9.6 0.1 1 23 209 231 209 231 0.96 5 19 0.0094 0.84 11.2 0.9 1 23 236 259 236 259 0.89 6 19 0.54 48 5.7 4.9 2 23 267 289 266 289 0.92 7 19 0.00039 0.035 15.5 5.2 1 23 296 319 296 319 0.98 8 19 0.00015 0.014 16.8 1.4 1 23 325 347 325 347 0.98 9 19 0.0003 0.027 15.9 7.0 1 23 353 375 353 375 0.98 10 19 1.9e-05 0.0017 19.7 4.4 1 22 381 402 381 406 0.95 11 19 0.99 89 4.8 1.6 3 23 483 504 481 504 0.88 12 19 1.7 1.5e+02 4.1 0.0 2 23 530 552 529 552 0.92 13 19 0.025 2.3 9.8 4.4 2 23 575 596 574 596 0.97 14 19 0.00046 0.041 15.3 0.2 1 23 600 622 600 622 0.97 15 19 0.012 1.1 10.8 0.8 1 23 627 650 627 650 0.93 16 19 0.05 4.5 8.9 0.3 2 23 658 680 658 680 0.91 17 19 3.6 3.2e+02 3.1 9.1 1 23 686 709 686 709 0.96 18 19 0.00067 0.06 14.8 2.6 1 20 715 734 715 737 0.92 19 19 2.9e-05 0.0026 19.1 2.6 1 23 743 766 743 766 0.98
Sequence Information
- Coding Sequence
- ATGCACGAATGTAAATTGCACGAAAATTCAAAGAAAACGAGATCAGGTAAACGACGAGACGTTGCAGAAAAAACACCTaaaacaaaagtaaagtttgaGGAAGTGAATGTGAAAGATGAAATAATTGGTGATTTGAACAATGAAATCAAGAAAACCAATGTAAATGCCAATTTAGAATTGCAGAGTTGGCGAGTGGCTGTGAGAGGAGTGCTGGCTAGCTCGAATGCCAATGCGATCCGCAACCACAGTGACAAAGGTTACGGGTGCTGTTTCTGCACCGAACAGTTCCCAGACCCTGCCGACCTCAAACAGCACAACACTGACCTCCACACAGAGGACATCAAAAAATTTAAAGGCGTCAAAGAACAATCTAAATTCTTCGTCAAAATGGATATTACTAACTTAAAATGCAACTTATGCAAACAGAACTTCACTAACATCGAACAACTCATCGGTCATCTAAATGATATTCATAACAAGAAGATTTTTCCTGATATAAAAAGACTGATATTACCTTTTAAATTCGAAAAATTAGATAGTAAGGAGCTACGCTGTTGTGAGTGCTGGCAGTCGTTTCATACGTTCAAGATTCTTCAAGAACACATGCATTCTcattatagtaattttatttgtgaCGTATGCTCATCCGGATTTGTAACTAGAAACTCACTTTTATTACACACAGCGTCACATGAGACAGGATCGTTCAAATGTTCTTATTGCCCAAAAGTTTTCGATTCGGTAACAAAAGCGAAAATGCACGAATCTAAATTGCACGAAAATGCCGCCCCAAAGTGTGTGTGTAAGTTTTGTAACGAACGATTTAAAGATTTTCGTAAAAAACAGAAACATCTAGAGCAAGTGCATGGTGTAGCGTCCACGAGCTACAAATGTCACGCGTGTGACAAATCGTTTGCCTATAAGAACACCTTGCAATACCACACAAAGAGATATCACCTAATGCTAAGGCCATACAAGTGCAAAGAATGTGGTATGGAATTTTTCACCACGTTCGAGTTGAGCCAGCATATGGTGAAGCATACTCCTCAGGATCAATTTCGTTGCGACATCTGTCCGAAGACATTCTGTCGGAAGCAGTCCCTGAAATGCCACCAACGCATCCACACGGATGACATGCGCTTCAAATGTGATCATTGTGGACATTTATTTGTCACTAAGTGTAATTTGAAACGGCATATGCGTGTACCGGAAGAGCATGCCGGAAACCACAGGATAGCGTATATGAAACTTAGAACCGAAGATATACCAtcaaaatctaaaacaaaaagAGGAACGACAGATAAACCagaaaagaaaggaaaaaagaGCAACATAGATATGGCGAAATGCTTTTATGAGCTCTATAAACTGAGAATGGCCGTGCGGGAGATATTAACCAGCTCGAACGCGACAGTGATTCACGGCCACGGAGACAAGGGTTACGGCTGCTGTTTCTGCACTGAGAACTTCTTCAAACCAGCTGACCTCAAGCAACATAATATACAAGAACACGAAAAAAACATACGCACGTTTCTCAAAGGAAAGGAACACGCCAAATTCTACGTTAAACTTGATATCACAGACCTGCAATGCAGTGTCTGCAAAGCAGATATGACCAATATCGATCAGCTCATCGAACATTTAAATGATGTTCACAGCAAAAAGATGTATGTGGAGGTGAAAAAATTGATCTTTCCTTTTAAGTTTGGCGGTAAAGAGCTGCGCTGCTCAGATTGTTTCGAGATGTTCTATACGTTCAAAGCTTTACACGAGCATATGCATTCCCATTACAGCAACTACATATGCGAAGTTTGCTCTGCTGGTTTTGTTACCAAAAGCTCGCTGTTTCTACACTTGACGTCCCATGGGACTGGGTCGTTTCAGTGTTCGCGTTGTCCAAAAATATTCGATACGccacagaaaaagaaaaaccatGAAGCCAAAGTGCATGAAGAAAAAGCACCTAAAAATGTTTGCAGAATATGTAATGAACGATTTAAAGAATACTACGCAAAGGAGAAACATATGGCAGATATGCATGGCATCAAGGCTGAGTATAGATGCGAAGAATGCAAAAAAACTTATCACTGTAAAGCACATTTACAAGGGCACTTTAAAAAGAATCACTTGATGTTGCGACCTCACAAATGCATGGAGTGCGAAATGAGCTTTTACACTTCGAATGACTTGAAGAAGCACATGCCCAAACACACTGGATCACGTGAATTCAAATGCAGTGTTTGCGCTAAAACATATGCACGAAAAACTACTATGACACAACATATGCGTACAAAACATGGCATAAAGTCGTAA
- Protein Sequence
- MHECKLHENSKKTRSGKRRDVAEKTPKTKVKFEEVNVKDEIIGDLNNEIKKTNVNANLELQSWRVAVRGVLASSNANAIRNHSDKGYGCCFCTEQFPDPADLKQHNTDLHTEDIKKFKGVKEQSKFFVKMDITNLKCNLCKQNFTNIEQLIGHLNDIHNKKIFPDIKRLILPFKFEKLDSKELRCCECWQSFHTFKILQEHMHSHYSNFICDVCSSGFVTRNSLLLHTASHETGSFKCSYCPKVFDSVTKAKMHESKLHENAAPKCVCKFCNERFKDFRKKQKHLEQVHGVASTSYKCHACDKSFAYKNTLQYHTKRYHLMLRPYKCKECGMEFFTTFELSQHMVKHTPQDQFRCDICPKTFCRKQSLKCHQRIHTDDMRFKCDHCGHLFVTKCNLKRHMRVPEEHAGNHRIAYMKLRTEDIPSKSKTKRGTTDKPEKKGKKSNIDMAKCFYELYKLRMAVREILTSSNATVIHGHGDKGYGCCFCTENFFKPADLKQHNIQEHEKNIRTFLKGKEHAKFYVKLDITDLQCSVCKADMTNIDQLIEHLNDVHSKKMYVEVKKLIFPFKFGGKELRCSDCFEMFYTFKALHEHMHSHYSNYICEVCSAGFVTKSSLFLHLTSHGTGSFQCSRCPKIFDTPQKKKNHEAKVHEEKAPKNVCRICNERFKEYYAKEKHMADMHGIKAEYRCEECKKTYHCKAHLQGHFKKNHLMLRPHKCMECEMSFYTSNDLKKHMPKHTGSREFKCSVCAKTYARKTTMTQHMRTKHGIKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -