Cfug031939.1
Basic Information
- Insect
- Carpatolechia fugitivella
- Gene Symbol
- -
- Assembly
- GCA_951230895.1
- Location
- OX579673.1:8732119-8744073[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.3 1.1e+02 4.5 0.3 3 23 203 224 201 224 0.93 2 12 0.012 1.1 10.8 1.4 1 23 230 252 230 252 0.98 3 12 0.0061 0.55 11.8 0.0 1 21 285 305 285 306 0.93 4 12 0.054 4.9 8.8 0.0 2 23 336 358 335 358 0.94 5 12 0.23 20 6.8 0.9 3 23 394 413 392 413 0.96 6 12 0.001 0.092 14.2 0.0 2 20 420 438 419 440 0.93 7 12 0.018 1.6 10.3 0.2 2 23 456 477 455 477 0.94 8 12 1.5e-05 0.0013 20.0 2.3 3 23 487 507 485 507 0.97 9 12 0.006 0.54 11.8 1.5 2 23 513 534 513 534 0.98 10 12 8.7e-07 7.8e-05 23.9 2.0 1 23 540 562 540 562 0.98 11 12 0.00022 0.02 16.3 0.4 2 23 569 590 569 590 0.96 12 12 0.00018 0.016 16.6 3.7 1 23 596 619 596 619 0.97
Sequence Information
- Coding Sequence
- ATGCAGTCACACTGTAGATTTTGTGGAGAACAGAGGAAGATTGAACAACTTATCGACTTTACTGCGGACGAAACCATAATACAAGAGCTCGCGTTCATCAATTTCAAATCAGAAACCTTGCCTAAATATTCTTGCAGATGTTGTTATAATTCTGTTCAAAAATGTTACAAATTCTTCAAAAAAGTTAAACAAACTCAAAtcttattaaaaagtatttatgaAAACAGCAAAACATCATTATTACAAGCTGATGAtattaaaacagaaaatgaCAATGATTTCGAAATGGATCCTGTTGATTCCATGGTTACTGGTAAAAATATTGATTGTCCAAAGCAAGATTTAAGTTATTCACCAACAAATActgaagaatttttttttatcaaaattaaactTGACACAAATTCTAAAGAAAAACAGACACATTTGAAACGtgatatgaaaattaaaaagcaaattgaaacaaatgaaaaacatgATATTAATTCCAAAGCATCTacgaaaaatacaaatattgatAACACATGCTTGCTTAGGAATACTTCATTGCCTATTgagtctaaaaataataaaggagAAATGTCATGGCTAGAATATGATTGGGCCTGTATGCATTGCCAAGCAAACTTTGATTCTATGGAAGCAGTCAGAAACCACTCAAAAATAGTGCATACTATGTGCTTTGGCTTCCAATGCAATTATTGCACAGaactatttaataattttaatctcTTTATTGAACATGCTAGACAGCATGATGAGAATCTGagGCTTTACTGTCAATTTTGCAATGTAGAATTGGCGACTGCCGTGGAAGCCTTGACCCACTCGACAAACCACTGGACCACGTCGCACATATGCGCTCTCTGTGGAGAAATGCTGCCCAGTAAATCAGCTCTAGAGCGACATAAGAAGGTATACAAGAAAGTTTCGTTACCGCAACGATGTTACAAAAAGAAGCCCAAAAGAGTTGCAGCAGACATATCCTGGGCGGAATACGAGTGGAGTTGTCAGGACTGCAGCCTAACTTTACCAGACATAGCCTCACTCCGAGCACATACTCGCGACGTCCACGGCAAATGTTTCGCAATGAAATGCGCGGATTGTCTCACTGTGATGACCAACTTCAAACAATTCGTCGGTCATGTCACTGCGCATCGGGAGTGTTTGAAAAACCACTGCCCGTACTGCAGCGCTAAACTAAATCAAATTGACCTTCAAGACCACATGTCTTCCCACATGTCGGGTCTCAAAGTACCCTGTCTGGGCTGTGGCGAGGTGTTCCCAAACAGTGCCGGTCTGACGCGACATAGGACCCTCTATGAGACCCCTAGAATCAGAGGCTTAAGTGATACGCAGAGTCTGACTTGTGGAGTGTGTCTCAAAGTATTCCCGAACGGATTCCAACTGAGAAATCATAAGGTAATACACAGCGAAAAACGCGAGCGAGACCAGATTTGCCACACGTGCGGCAAAGCGTTCTTTGACTTAAAGACTTTGACGAACCACATCAAGACGCACTTCTCTAAGACAGAGACTTGCGAGATTTGTCAGAAGAATTTCCTCACCAAGCAGCGGTTAAAGGTACACATATCGACGCATCTCGAGCTGAAGCAGTTTGTGTGCAATGAGTGCGGGAAGCGGTTCAGGCGGAAGAGCCACTTGGGGCTCCATCTAGTGACGCACAGCGCGGCGCTTCCGGAGCAGTGCGGCGCTTGCGGGAAGCGGTTCAGGCTGCCCAGCTACTTGAAGATACACGAGAGGCAGCATACAGGTATCAGGCCGTACTCCTGTGAAGTCTGCAACGAGACCTTCAGCCACTGGGGTAACTGCAATCGCCACATGATCAGAAAACATGGCGTCACCTTTGCCAAAACTAAAATCACCGCGCAAGGCAAATTCGATGTCAACAGGGAGACGGGGGAAACGAAAAAGATCGATATCGGGGGTAACGCTAAAGAGTGGTGTAAAGAAATGCTTAAGCCGAAAAAGCGCGGCAGAAAGAAAAAAGGAACTTGA
- Protein Sequence
- MQSHCRFCGEQRKIEQLIDFTADETIIQELAFINFKSETLPKYSCRCCYNSVQKCYKFFKKVKQTQILLKSIYENSKTSLLQADDIKTENDNDFEMDPVDSMVTGKNIDCPKQDLSYSPTNTEEFFFIKIKLDTNSKEKQTHLKRDMKIKKQIETNEKHDINSKASTKNTNIDNTCLLRNTSLPIESKNNKGEMSWLEYDWACMHCQANFDSMEAVRNHSKIVHTMCFGFQCNYCTELFNNFNLFIEHARQHDENLRLYCQFCNVELATAVEALTHSTNHWTTSHICALCGEMLPSKSALERHKKVYKKVSLPQRCYKKKPKRVAADISWAEYEWSCQDCSLTLPDIASLRAHTRDVHGKCFAMKCADCLTVMTNFKQFVGHVTAHRECLKNHCPYCSAKLNQIDLQDHMSSHMSGLKVPCLGCGEVFPNSAGLTRHRTLYETPRIRGLSDTQSLTCGVCLKVFPNGFQLRNHKVIHSEKRERDQICHTCGKAFFDLKTLTNHIKTHFSKTETCEICQKNFLTKQRLKVHISTHLELKQFVCNECGKRFRRKSHLGLHLVTHSAALPEQCGACGKRFRLPSYLKIHERQHTGIRPYSCEVCNETFSHWGNCNRHMIRKHGVTFAKTKITAQGKFDVNRETGETKKIDIGGNAKEWCKEMLKPKKRGRKKKGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -