Basic Information

Insect: Carpatolechia fugitivella
Gene Symbol: -
Assembly: GCA_951230895.1
Location: OX579658.1:4702554-4706890[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 4.4e-06 0.00039 21.7 2.3 2 23 300 321 299 321 0.97

2 11 0.001 0.09 14.2 2.8 1 23 327 350 327 350 0.97

3 11 6e-05 0.0054 18.1 0.5 1 23 360 382 360 382 0.97

4 11 0.00019 0.017 16.5 2.3 1 23 390 412 390 412 0.98

5 11 0.024 2.2 9.9 1.2 1 23 418 440 418 440 0.97

6 11 0.0017 0.15 13.5 3.5 1 23 446 469 446 469 0.95

7 11 0.068 6.1 8.5 1.0 2 23 475 494 474 494 0.95

8 11 8.4e-07 7.5e-05 23.9 2.0 1 23 500 522 500 522 0.97

9 11 0.00014 0.012 16.9 2.0 1 23 528 550 528 550 0.98

10 11 0.00075 0.067 14.6 2.2 1 23 556 579 556 579 0.97

11 11 0.0015 0.13 13.7 0.5 1 20 585 604 585 606 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	4.4e-06	0.00039	21.7	2.3	2	23	300	321	299	321	0.97
2	11	0.001	0.09	14.2	2.8	1	23	327	350	327	350	0.97
3	11	6e-05	0.0054	18.1	0.5	1	23	360	382	360	382	0.97
4	11	0.00019	0.017	16.5	2.3	1	23	390	412	390	412	0.98
5	11	0.024	2.2	9.9	1.2	1	23	418	440	418	440	0.97
6	11	0.0017	0.15	13.5	3.5	1	23	446	469	446	469	0.95
7	11	0.068	6.1	8.5	1.0	2	23	475	494	474	494	0.95
8	11	8.4e-07	7.5e-05	23.9	2.0	1	23	500	522	500	522	0.97
9	11	0.00014	0.012	16.9	2.0	1	23	528	550	528	550	0.98
10	11	0.00075	0.067	14.6	2.2	1	23	556	579	556	579	0.97
11	11	0.0015	0.13	13.7	0.5	1	20	585	604	585	606	0.95

Sequence Information

Coding Sequence: ATGGCTAAGTTAAAGAATAAATGTCGACGAAGAGGTCGTAAACCTAAATCATTGACAGGTATCAAAGGTgcaagtgaagtgacgaaaaaCTGTGATCCAAAGCTGGATAAGAGTGGGAACACTCATAATCTGAGAAGTACCTCTCTAAGCAATGACACCGATCAAACAAAATTGCCAACCAGAATAATCACTAGAAGTGGACGGatcagaaaaaaaagtattaaagaTCATCTAAAAGTTATggataacatactaaaaagtgaATTGATGATAAAAGATACCAGTGTGAGGTCATTGAAAAAATTACCAGATTCCCCGACAAGCAATGGGAATAACAATAATGATCTTGGAGTGAGcgatcaaaataatattgtgattGATGTGCCTCTAACTCTTCCACGTAATGGAAATAGTCCAAAGAAATCAAACCGCAAAAGCCCAAAAAATTATTCAGCTCCTGAAAACCAAAGCAATCTAGTGGGAAAAATAAGAGTTGCAAGAAATATATTTCAAGATCCTGAAAATGAAGTTCAGAATGCTACAAATCTTTCCAATGATCAAACCATAAATACACAAGgaaaagaaaaatctaaatcCCCAGTAACTGTAGATCAAAACCTTGAAAAAGATGTGTTAAGTAACATGCAAAGTGTTTTTTTACCTGTCAATGAAGTTCTTTTTCCGGAGAAGGAAACaaagaaatatgttaaaaagaagacaagaaaaaacaaaagcccAGTTATTGACTCAAAAAAGAACTTGAGAAATGTTAAAAAACACAGgagtacaaataaaaataaattgaaacataaAACTGAACCAATTCATCCTGCAGACCCATCAAAAACTAAACAAGTGAGATTGAGTAATGGTGTCGTTTTGACCTTGTCTTTGGTACAATGTGACCATTGTCTAAAAACCTTCAGTAACAAAGCCTCATTAAGCAGACATATGTTATCCCATTTTGATTTAAGACCGTACCCATGCCAATATTGTCCAAGGAAGTTCCGTTACCGATCTACCAGAAAGATACATGTACAGAAACGTCACCCTGCTACAGTAAATCCCGTAGAATTCTACATTTGCCATATCTGTGACAAGACCTTCCAATTAGAGGAAAACTTGGAACTTCATTTAGCAAGTCATATAAAATCTGAAAGTAAAAATTTCAAGTGCTTGTATTGTGACAAGAAATTTTCATATCGCCTCTTgttaatacagcatgaaaagTCTCACTTAGACACAGGCCGTTTCAAATGTATTACCTGTGAAATGACCTATGATTCAAGGAGTCGGTTGGCTCAACATCTAAAAACCCATTCCAAAGATAGGGACTATATTTGCCAACACTGTGGAAAAGCATTTCAGAGACTAAATTCTATCAAGAGGCATGTGACAGTATGTCATGGTGGTCAAACTATTCAATGCCCCGTTTGCTTTAAAGAATTAAAAGGACATTTGAATGAGCACATGAGAGTACATAAGCAAAATCGGCCACATATTTGTCCAGAATGTGGTCAACGTTTTACACAATCTACACAGTTGAAGGTCCATCGCCGTTCACACACTGGTGACCGGCCATACCCCTGCAGGATATGCAACCGGCGATTCGGTCATTCCAATTCTCTGATGCTGCATGTCAGAAGACACACTGGAGAAAAACCATTTCAGTGTGCTATGTGCTTTATGAGCTTCTCCCAGCTGCCACACATGAAAAACCACATGAGCAAAATACATGGCAAAGACAGCgcatataaatgtgaaaaatgtgAGGAGTTTTTCAAGTTGAAAGCTGAGTTAAAGACACATGAAAAAGGCTGCTCAGCAGGAGATAGAGAGTTGTCCTTCGAAGAGCAGATCCAGGCTTCAGTAGAGATTGAAGAGGTCGAGTTGGAGTCTTCAATGAAGCTTTCCAGGATGCGGTTTCTGCTAGCCCTCCTTCTCACCATGATGGCTTcaaaagaaaaacttaaatatCTAGGTTTCAACAAACGTCTTATAGACGACCTACTTGTGGAGTCCCTTGAGGCAATGGGCTTGGCGCCATGTAAGGAGGAGTCTCTTAGCCCTTTCAAACGACTCAAAGCTAACATTGAGACCTTGCTTGATGGTACCATCCCGAGGCGACAGATGGAGAAGTTCAGAAGTGAAAACAAATCCACAGAAGAACTGCTGATTTTGCTTACTggtgaaaataagaaaaaatataaggaATACAACAGTATTTCTTTTTAA
Protein Sequence: MAKLKNKCRRRGRKPKSLTGIKGASEVTKNCDPKLDKSGNTHNLRSTSLSNDTDQTKLPTRIITRSGRIRKKSIKDHLKVMDNILKSELMIKDTSVRSLKKLPDSPTSNGNNNNDLGVSDQNNIVIDVPLTLPRNGNSPKKSNRKSPKNYSAPENQSNLVGKIRVARNIFQDPENEVQNATNLSNDQTINTQGKEKSKSPVTVDQNLEKDVLSNMQSVFLPVNEVLFPEKETKKYVKKKTRKNKSPVIDSKKNLRNVKKHRSTNKNKLKHKTEPIHPADPSKTKQVRLSNGVVLTLSLVQCDHCLKTFSNKASLSRHMLSHFDLRPYPCQYCPRKFRYRSTRKIHVQKRHPATVNPVEFYICHICDKTFQLEENLELHLASHIKSESKNFKCLYCDKKFSYRLLLIQHEKSHLDTGRFKCITCEMTYDSRSRLAQHLKTHSKDRDYICQHCGKAFQRLNSIKRHVTVCHGGQTIQCPVCFKELKGHLNEHMRVHKQNRPHICPECGQRFTQSTQLKVHRRSHTGDRPYPCRICNRRFGHSNSLMLHVRRHTGEKPFQCAMCFMSFSQLPHMKNHMSKIHGKDSAYKCEKCEEFFKLKAELKTHEKGCSAGDRELSFEEQIQASVEIEEVELESSMKLSRMRFLLALLLTMMASKEKLKYLGFNKRLIDDLLVESLEAMGLAPCKEESLSPFKRLKANIETLLDGTIPRRQMEKFRSENKSTEELLILLTGENKKKYKEYNSISF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -