Cfug022580.3
Basic Information
- Insect
- Carpatolechia fugitivella
- Gene Symbol
- -
- Assembly
- GCA_951230895.1
- Location
- OX579662.1:10309844-10313043[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 5.4e-05 0.0049 18.2 3.1 1 21 125 145 125 146 0.94 2 18 0.043 3.9 9.1 0.9 3 23 152 171 151 171 0.97 3 18 0.0036 0.33 12.5 0.1 3 23 178 199 177 199 0.97 4 18 8.1e-05 0.0073 17.7 0.5 1 23 204 226 204 226 0.96 5 18 0.034 3.1 9.4 7.7 1 21 229 249 229 250 0.95 6 18 0.0016 0.15 13.6 0.8 1 23 265 288 265 288 0.94 7 18 0.00047 0.043 15.3 0.8 2 23 295 316 294 316 0.94 8 18 0.028 2.5 9.7 0.3 1 23 350 373 350 373 0.93 9 18 6.2 5.6e+02 2.3 1.2 1 14 381 394 381 397 0.86 10 18 0.059 5.3 8.7 1.7 2 21 505 524 504 525 0.92 11 18 0.032 2.9 9.5 0.1 1 23 558 581 558 581 0.95 12 18 4.9e-05 0.0044 18.4 0.1 2 23 587 608 586 608 0.96 13 18 0.14 13 7.5 1.9 2 20 612 630 612 632 0.91 14 18 8.2e-05 0.0074 17.7 1.5 1 23 658 681 658 681 0.95 15 18 0.0023 0.21 13.1 0.5 1 23 687 709 687 709 0.92 16 18 0.33 29 6.3 0.0 2 23 716 737 715 737 0.96 17 18 0.008 0.72 11.4 0.8 1 23 743 766 743 766 0.94 18 18 0.0096 0.87 11.1 1.0 2 23 773 795 772 795 0.95
Sequence Information
- Coding Sequence
- atgattaaatccAATTGTAATCGATTAAAATATGCCCAACTCTGGTTTCAGGTGGCGGATAGTACGGATCTTCCACCAGGAGTATGCTGCCCTTGTTTCGATGCAACTCTTACAAGCTATCAGTTCAGACAACTATGTAAAAACTCCAACGAGACGTGGCACGACGCAACTGATTCTTTATCTGATACATTTTTCTTTGAAGAACCAACTGATTTGGATAAGACATactatgtattttataataaaggaGTGGAGAATATCATCCGAGATCAAATATCAAGAGTCGCAAACTTGACAcaagctttaaaaataatacaagttgACCCCATAAGTGCAGAACCATATATCCCAAAAAACAGGATTATGAAAAGATGTAAGTGCCACGACTGTGGAAAATCATTTCAGACtccattttatttaaatcaacaCTTGAAAGCATCTACTAAGCGAGCTTGTCATCAATGTGGGACTGTCGTATCTAAGCAAGGGCTAGCGAAACATTTACAAAagcatgaattatttttgaatccTTGTAACATTTGCTATGAACTTTTTGCTGACGAAAATAATCTAGAATCCCATGTTAAAACATACCATACTTCAGATAAACATATTTGTAAAAGTTGTGGTGCAGTGTTCGTCAATAGCAGAGCGCTAAGAGCTCATATGTATTCCCATAgtcttttccattgtttatatTGTAATACCAGTTTTGAAAATCGAAAATGTTTAAAGCACCACCAAAAATCGTGTTCGCAAAGCAAAGAAAAGAGGTCTTGCTGTAAAGGTCTATTCATATGCGACTATTGTGAtacaaaatatgataaaaaaccTTCTCTAAAAATGCACATAATTCAAAAACATCTCAACGTGTTACCATGGATTTGTAAAACTTGCGGGAAGAAGACATCTACTCTAGCGCACCTTCGATCTCATGAGGCTGTTCATAACTCGAATAGACCagtatatttatgtttttgtggCGCTCAAATGCGAACGTATTTGGGATTTCAACTTCATCAAAGGATCCATACGGGTGAAAAGCCATACCAATGCGCAGATTGTGGAGAAAGCTTTCTGTCAGCCTCTAGAAGGCTAGACCACATCAAAAGACGACACAGAAGCACCAAAGATATGCCGCATTCTTGCGACAAGTGCAAAGCGAGATTCATAAATGAAGACAGCGTGTGTCCGTCTGGAGCGTGCGTGTCTTGCACCGGCGCCTTAGTTGCTGCCCAGGAATTCCGTACCCTTGTCATACACTCTCAAAAATTGTGGTACAAAGCCGTTGATAATATTGAAAaacttaatattgatattttaaatgcatCTTATGTCTTTTCAGTGAAATCAATTTTTGCATTTGTTAAAAAGGAGAACTTGTCCATACAAATCGTCAAAGATTATACTGGTGCAGAACCAAACAGTGTCCTCAATAGATTAACAAGTAAAACATCTTCGAAGAAAAGTAACGAGAGGAAGCCTAGGTTAGCGAGAACAGGCTCTCCTTGTGACTGCACTGATTGTGGTCAACATTTCCTTAGCCCGTATTACTTAAACCTACACTTAAAGAATAGCGGACAGAAAGATGCCTGTGTAATATGTGGAACCATAGTATTGAGAGGGCAAGAAATGAAAGAGCATCTATGTTTGGTTCATAGACAAACTACGTATTTATGTTCCAACTGTCCAGCATTGTTTGACAAAGAAATTGAACTGAAAAAACATCTGAAAGTTGCTCATAAACCCGGTGCCTTAACGTGTGGAGATTGTGGTAGAACGTTTCCAAGAAATGGTGCTTTTGAAGCCCATTCCCAAATGCACGCTGTCCGAACTTGTAGAGCCTGTGGAACACAATTTACAAACAGAGGATGCTATCGGAAACACAGGTCTATATGCGAACCTACGGCAAAGCCCGACACTCAAAACATGCCCCGAAGTAAACGCTCCAACGTTAGAGATCCAGCTACATTTATATGCGATTACTGCAACAAAACCTATCACTCGCGTCCACAACTTAAAAACCACATAATGTGGATTCACATGAACGTTAGACCCCATCAATGTCAATGGTGTGATAAACGTTTCTACACGCCAGCGCGCTTAGCTGAACATAGCGTTGTTCATACTAGGGTACGTAAATGGGAATGTGACATCTGCGGTGCGAAATTAGTATCTAAGATGGCCGCTGTCTACCACAGGCGAAGACACACAGGCGAAAGACCTTATGAATGCGAAGACTGCGGCGAGCATTTCATTTCAGCTTCTCGCCGATCTGAGCACGCCAAACGAAGACATAACAAAGGTCATAGATTGCAGTGCAATTATTGCGTATCTACATTTGTCAGAGGACATGAGCTTAGGAAACACGTTGAAAAAGCGCACAAAACAGAAGTCAAAGAGTTCACGGTAACACCTGTTGTTAGCAGTAGTGAAGGTAATGAAATGAGATTTTTGAAAGTGTGCTTACAGTAA
- Protein Sequence
- MIKSNCNRLKYAQLWFQVADSTDLPPGVCCPCFDATLTSYQFRQLCKNSNETWHDATDSLSDTFFFEEPTDLDKTYYVFYNKGVENIIRDQISRVANLTQALKIIQVDPISAEPYIPKNRIMKRCKCHDCGKSFQTPFYLNQHLKASTKRACHQCGTVVSKQGLAKHLQKHELFLNPCNICYELFADENNLESHVKTYHTSDKHICKSCGAVFVNSRALRAHMYSHSLFHCLYCNTSFENRKCLKHHQKSCSQSKEKRSCCKGLFICDYCDTKYDKKPSLKMHIIQKHLNVLPWICKTCGKKTSTLAHLRSHEAVHNSNRPVYLCFCGAQMRTYLGFQLHQRIHTGEKPYQCADCGESFLSASRRLDHIKRRHRSTKDMPHSCDKCKARFINEDSVCPSGACVSCTGALVAAQEFRTLVIHSQKLWYKAVDNIEKLNIDILNASYVFSVKSIFAFVKKENLSIQIVKDYTGAEPNSVLNRLTSKTSSKKSNERKPRLARTGSPCDCTDCGQHFLSPYYLNLHLKNSGQKDACVICGTIVLRGQEMKEHLCLVHRQTTYLCSNCPALFDKEIELKKHLKVAHKPGALTCGDCGRTFPRNGAFEAHSQMHAVRTCRACGTQFTNRGCYRKHRSICEPTAKPDTQNMPRSKRSNVRDPATFICDYCNKTYHSRPQLKNHIMWIHMNVRPHQCQWCDKRFYTPARLAEHSVVHTRVRKWECDICGAKLVSKMAAVYHRRRHTGERPYECEDCGEHFISASRRSEHAKRRHNKGHRLQCNYCVSTFVRGHELRKHVEKAHKTEVKEFTVTPVVSSSEGNEMRFLKVCLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -