Cfug003966.1
Basic Information
- Insect
- Carpatolechia fugitivella
- Gene Symbol
- L
- Assembly
- GCA_951230895.1
- Location
- OX579646.1:11369322-11395095[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.8e-06 0.00016 22.9 1.7 1 23 87 109 87 109 0.99 2 17 0.77 69 5.2 5.8 1 23 115 137 115 137 0.97 3 17 1e-05 0.00093 20.5 4.1 1 23 143 165 143 165 0.99 4 17 1.8e-05 0.0016 19.8 0.1 1 23 171 193 171 193 0.98 5 17 0.0039 0.35 12.4 0.0 2 23 208 230 207 230 0.92 6 17 7.3 6.6e+02 2.1 0.1 9 23 261 276 257 276 0.93 7 17 0.37 33 6.2 0.0 3 23 337 357 336 357 0.97 8 17 0.17 15 7.2 0.0 2 23 371 392 370 392 0.91 9 17 0.001 0.091 14.2 0.3 1 23 400 423 400 423 0.94 10 17 0.04 3.6 9.2 0.1 1 23 428 451 428 451 0.92 11 17 0.0026 0.24 12.9 0.4 1 23 505 529 505 530 0.96 12 17 0.00024 0.022 16.2 0.1 2 23 588 609 587 609 0.96 13 17 0.071 6.3 8.4 0.0 1 23 617 639 617 639 0.97 14 17 1.6 1.5e+02 4.1 0.7 2 23 647 668 646 669 0.93 15 17 1.1 96 4.7 0.3 1 23 743 765 743 765 0.94 16 17 0.0042 0.38 12.3 0.1 1 20 773 792 773 795 0.95 17 17 0.12 11 7.7 0.3 1 23 802 824 802 824 0.94
Sequence Information
- Coding Sequence
- ATGATCATGCTATTCAAGGGCAACAGCAGCCGGCTCGAGCACCTCATAGAGAAGATCCAGGCCAACAAGGAGAATCACGACGTCACTTCCGAGGACATAAAAGAGGCGCTGGGCAGCGTGGGTAGCACGGCGGGCAGCTCGTGGCCGTCGTCGACGCCGGAGCCGTCACCGTCGCCTGCGTCCACGCCGACGTCGGCCGCCGACGTTGACGCCGACGCCGACAACTCCTTCACACTGGGCGCCACCGAGCACACGCCCTACCAGTGCCAGTTCTGTGATAAGGCATTCCCGAGGCTGTCGTACCTCAAGAAACATGAACAGACACATTCGGATCAGATGCCGTTCAGATGCGAGTTTTGTTCGCGGTTGTTCAAGCACAAGCGTTCCCGGGACCGCCACGTCAAGCTGCACACCGGCGACCGCAAGTACCGCTGCGCACATTGCGAGTCAGCCTTCTCCAGGAGTGATCACCTGAAGATCCACATGAAGACACACGACAACCAGAAGCCGTTCCAGTGCACGATTTGCAACCGCGGGTACAATACGGCGGCCGCGCTCACCTCACACATGCAAGGACACAAACGCGACCGCGACCGCGACCCCGACCGCCGCCGCACGCTGCGCTGCCTCCGCTGCGGAGACGGCTTCCGAAGACCTGACTTGCTACAGGCACACATGGCTGCGGCACACGGTGTCGACGCTGCTTCGATGACACCACCAAGGCGCATAGCATCCCAACCACCGCCAACTCTACTCGCCTGCATTTATTGCACTCGCGACACGTTCACCAGCATGGAACAACTTCAGCTACACGTGAGGGCAGCACATTCAGCGCTCTTGAATGGAGAAACGCCGTCTGTTGATCAACCCTTACCGACAGATCTTAGTCGACGAGGAACAGAAGAAACTACAAAACGATCTGGATCTGCCAATGAGAACCCTACTATCAAACGCCGTCGATCTGGCTCAGTGACGCCACAAACGGCTCTATCTCCCAGCACACTTCTTTGCAATCAGTGCGATGCAGCTTTACCCGACTTTGAAGCTTTCCGAGCGCATTTGAAGGGGCACTTAGAAGAAGGAGGTGAATTGGGAAACTCGAGTCCCGTACCGTGCTTGCACTGTGGAGCCACATTCGCGGATGCAGCAGCTTCAGAACGCCACCTGACTGCGCATTATTTGGCTATGTCTTGCGAGTACACCTGTCATAGCTGCGCGCGCAGTTTTCCGGCCCCGGATGATTTACAGAAACATCTACTGGATCTTCACGCTCATCACTTGTACCGATGTTCTCTTTGTAAAGAAATTTTCGACTCTAAAGTTGCTATTCAGGTACATTTTGCCGTCGCACATAGCGGTGAAAGCAAGGTGTGGATGTGTCGTGgctgcggcgcgggcgcaggagCTATGCGGACGGAAGCGGAGGGTGCCgctcatgttctatctaggcacGCGGCCCGGTGCGCTTGCGGCGCGGTCATATCCGGCCCGAGAGCCCGCTCACACCGCGCCTATAGGTGCCCCGTTCCAACCTGCACCGACACCTTTGCCGTCCAATACCTTCTGGAGAGACATATGCAAGCGCATCATGCTATGCCGCAGTCGGTGTTAAACGGCGACCTTACCAGGCCCAAACGAACAGAGAACAACAACGCAGTCGAGGGTCTCGACGGCGCCTGCTCGCCCTGCAACACTGGTGGCGACAACGGGCCGAGTGCCGGGCCGGAGGAGCGCCGCCGCAAGAACGGCGCCGTGGCCCTCCAGTGCGCGTACTGCGGCGAGCGCACGCGCAGCCGTGCCGAGCTGGAAGCGCACACCAGAGCACACTCCGGCGCCGCCGCGGCTCGACACAAATGCCTCATCTGTGATGAAGTTCTCCCTTCAGCTGCCGTCCTCGCTGAGCATAAGCTTACGCATTGCAAGGTGGTTGCCGGAGATACTTGTGCCAGATGCCGAGCGCGGCTGCCTACAGAAGAGTCGTTCTTGAGTCACATGGCTCGCCATCACCCCGCCTTGCCGGCTCCCTGCGTGGTCTGCCGCCAGACCCTCGCTTCGGAAGCAGAAGCGCGTCTCCATGCTCGCTTCCATTTGAGAGTGACGGAGGACGAACAGCGATGCGCGATCTGCCTGAGACCTCTTCCTGAAGAGGAGGCGGGGGAAGGCGCCCGCGCATGTTCCTCTTGCTACGCGAGGCATGCCGCCCCGCGCGCTCCGCCTCCCACAGACCACGACTGTCGATTGTGTCGAAGGGCACTTGGATCTCCTACACGATTACAAGCTCATCTCATTGAACACACGTTTGCTGGCATCGGAGCGTTCACCTGCTACTTATGTTCAGCAGTGTTCACAAGCGCCGCAGGTCTACAGCGCCATCTTCCGGAGCACGCATCAGCTCCGAGGCCTTACGACTGCGGCCGCTGCGGACTGAAGTTCTTCTTCCGAGCGGAGTTGGATAATCACGCTTTCGTGCATCTTGAGGAAGCCGAGATAGCCCAAAGAGCGTTTTACGAAGCTTATGCCAGAGGAGCAGCGTCGGCATGGGCGGCTTTGGCGCCCCCCGAGCCTGCACCGGTGACTACGCCGACGACTATTGAAATCCCCGTGAAGCAAGAGGTGGAGATCAAGGAGGAGAAAACTGACGAATACATAGAAGTGTCGTCCCCTCCCCCGCCCACCCCGCCACCCGCGGAGTCCACCCCGCCGCCGGTCGTCAAGCAAGAAAATCCTGATGAACACTGA
- Protein Sequence
- MIMLFKGNSSRLEHLIEKIQANKENHDVTSEDIKEALGSVGSTAGSSWPSSTPEPSPSPASTPTSAADVDADADNSFTLGATEHTPYQCQFCDKAFPRLSYLKKHEQTHSDQMPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTICNRGYNTAAALTSHMQGHKRDRDRDPDRRRTLRCLRCGDGFRRPDLLQAHMAAAHGVDAASMTPPRRIASQPPPTLLACIYCTRDTFTSMEQLQLHVRAAHSALLNGETPSVDQPLPTDLSRRGTEETTKRSGSANENPTIKRRRSGSVTPQTALSPSTLLCNQCDAALPDFEAFRAHLKGHLEEGGELGNSSPVPCLHCGATFADAAASERHLTAHYLAMSCEYTCHSCARSFPAPDDLQKHLLDLHAHHLYRCSLCKEIFDSKVAIQVHFAVAHSGESKVWMCRGCGAGAGAMRTEAEGAAHVLSRHAARCACGAVISGPRARSHRAYRCPVPTCTDTFAVQYLLERHMQAHHAMPQSVLNGDLTRPKRTENNNAVEGLDGACSPCNTGGDNGPSAGPEERRRKNGAVALQCAYCGERTRSRAELEAHTRAHSGAAAARHKCLICDEVLPSAAVLAEHKLTHCKVVAGDTCARCRARLPTEESFLSHMARHHPALPAPCVVCRQTLASEAEARLHARFHLRVTEDEQRCAICLRPLPEEEAGEGARACSSCYARHAAPRAPPPTDHDCRLCRRALGSPTRLQAHLIEHTFAGIGAFTCYLCSAVFTSAAGLQRHLPEHASAPRPYDCGRCGLKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAASAWAALAPPEPAPVTTPTTIEIPVKQEVEIKEEKTDEYIEVSSPPPPTPPPAESTPPPVVKQENPDEH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01437318;
- 90% Identity
- -
- 80% Identity
- -