Cfug032300.1
Basic Information
- Insect
- Carpatolechia fugitivella
- Gene Symbol
- -
- Assembly
- GCA_951230895.1
- Location
- OX579674.1:3249915-3256644[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.9 1.7e+02 3.9 0.3 1 23 91 114 91 114 0.94 2 18 0.6 54 5.5 0.2 2 23 143 165 142 165 0.95 3 18 0.019 1.7 10.2 1.3 2 23 191 212 190 212 0.97 4 18 0.0018 0.16 13.5 0.1 1 23 216 238 216 238 0.98 5 18 0.00075 0.067 14.6 0.9 1 23 243 266 243 266 0.97 6 18 0.028 2.6 9.7 1.0 3 23 274 295 273 295 0.93 7 18 0.0022 0.19 13.2 0.8 2 23 302 324 302 324 0.95 8 18 0.015 1.4 10.5 3.0 1 23 330 352 330 352 0.96 9 18 2.6e-05 0.0024 19.2 1.4 1 23 358 380 358 380 0.99 10 18 0.67 60 5.4 0.1 1 18 478 495 478 495 0.93 11 18 0.36 32 6.2 0.5 2 23 527 549 526 549 0.94 12 18 0.0072 0.65 11.5 0.0 1 23 597 619 597 619 0.98 13 18 0.49 44 5.8 1.0 1 23 624 647 624 647 0.87 14 18 0.0011 0.099 14.1 0.5 1 23 653 676 653 676 0.98 15 18 8.7e-05 0.0078 17.6 4.5 1 23 683 705 683 706 0.96 16 18 4.5e-05 0.004 18.5 1.4 1 20 712 731 712 734 0.92 17 18 1.2e-07 1.1e-05 26.6 1.6 1 23 740 762 740 762 0.99 18 18 1.8e-05 0.0016 19.8 5.2 1 23 768 791 768 791 0.98
Sequence Information
- Coding Sequence
- ATGGAGCAGGTCCTTGCGTTGAACTGGGACCAGGGACCAGTTTCCccttttgaaaatataatagtGGTCAACTGGTTCCCGGCCCTCAGATACATGATGTGGGCCGGTAAACATCAAGACACTGTAGCTAAAAGTGTAAAGATAAGACAAGAATCTGGAGTAACCGACAAGCTGAAATCTCGTTTGGATCGCGAGAAGTATTATAACAACACGCGACAGGTGCTTTGGTGCTCGAATGCGACGCCGATACGCGGCCACGGCGACGGCGGGTACAGCTGCTGCTTCTGCGCAGCCATATACCCCGCCCCCGCCGATCTCAAGACACACACCATGCAGCAGCACAAAGATGCAGACATTATGGATGCCAGCTTTCTCGAGAGAATCAATGTGAACGCCTACTATGTCAAATTTGACATAACGGACTTACAATGCACTCTTTGCGACCAACAAATGAACACTATAGAATTGTTACTCGAGCATCTTAAAAAGATACATCGGCGGAAAGTGTACACAGATATTAATAATAGATTGGTGCCCTTTAAATTCAGTGGAGGAACCCAAGAACAACTTAAATGCTTCAtgtgtttaaacatttttagcaAATTCAAGGCCTTGACTGAACATATGAACACGCATTACCGAAACTTTATTTGCGAAATTTGCGACGCCGGATTCGTGACTAGGTCTATGGCTGTTACTCACACTAAAACACATAAAATTGGCACATTCAAATGTGGGTACTGCCCTAAAatatacaatacgaaaacgaaAGTTGCAAACCACGAAAGGGTGAAACACACGCGTACTAAACAGAACATATGTGGTATTTGCAATGAAAGGTTCACATATTATCATAGTAAGCAGAAGCATTTAATTGAAGTGCACGACGTTAAAATCGAAGCTAAATGCCTAGCCTGCGAGAGAGTGTTCGATACCCAGAAGAAGCTCAGGGTTCATGTGAGAAAAGATCACTTAATGGACAAGAAGCACAAATGCACAGCTTGCGATAAGAAATTCTTTTCATTGAATGAGTTGCGGGATCATTCCATCAAGCACACAGGTTTAAAAGAGTTTCAATGTGGCAAGTGCTTTAAATCTTACGGGCGTAAGAAGACTCTCGTGGCACATATGAAAGTTCACACTGAACGTAACCGACAAGAAGTTATCAGAAAAATAAGAGATCTGGTCAAAATAGAAGTCGAGGAAGATATTGATTTACAAAGAATTGACAATGTCTTCGCCGAAGAAAGCTATACAAAGAAAGCTAAGTCAGCAAAAGTACATTCTAAAGCAGCTAAAAGTGAGAAGAAATCAACAGACGATTCACCTAAAATATCAAGAATAGATTATGTGAATAGGCTACGTGCGTCAGTGAGGGAAATTCTAGAGTTTTCGAACGCTACGCCTATTCGAAGTCGTGGCGGCATTGGTTACGCGTGCTCCTTCTGCGAGCGGCAGTTCCCTGTCCCCGCCGACTTGAAACGGTACAACGCGCTCCAGCACACACAAGACATAAGCACCTTCATGAAACTGAAACATCTCCCCGTCTTCTACGTCAAAATGGACATCACATCTTTACAGTGCAACTTGTGCTTCCATAAGATCCCCACTATTAGTCAACTAATCGATCACTTAAACcaagtacataataaaaacatcCTAATTGATGTCAAGAAACGAATTTTTCCCTTCAAGTTTGAAAGTAAAGAGCTGCGATGCTGTGAGTGCCCTAGTACATACCATGCCTTCAAGGCCTTGCAAGAACACATGCATTCTCATTATAGTAATTATATCTGCGACGTTTGTAGTGCGGGTTTTATCATAAAAAGCGCGCTACGAGTCCATAAAGCAACACATGAACTTGGATCTTACAAATGTGCACATTGCCCGAAAGTTTTAGATTCTGTGGGTAAGAGGAAAATGCACGAAAAATATGTCCATGTATCCGATCTCAGGTTTAAGTGCGCGTACTGCGACCTTAGATTTAACGTTAGTGATGCCAGGGAGAAGCATCAGTCAACTGTCCACGGCGCTATTTCAATAGAATACAAGTGCCACGCTTGTAATAAAGTTCTAGCAAATCGTTCCTCTCTACGGACTCACATTAAGAGGCACCATTTACTGCAACGGCTGCATCAATGTCCTGAATGCGATATGCGGTTTTTCACCCCTAATGAACTTAAGAAGCACATGCCGAAGCATACTGGCATTCGTGACTTCAAATGCGACGTTTGCCAGAAAAGTTTTGCTCGCCAGAAGACTCTGAAAGAGCACATGCGCATACATCTAAACGACAGGAGGTTTAAATGTGAGCATTGTGACAAAGCTTTCGTTCAGAAGTGTAGTTGGAGGGTACACATGAGATCCAAACATGGCGAAATAATGTGA
- Protein Sequence
- MEQVLALNWDQGPVSPFENIIVVNWFPALRYMMWAGKHQDTVAKSVKIRQESGVTDKLKSRLDREKYYNNTRQVLWCSNATPIRGHGDGGYSCCFCAAIYPAPADLKTHTMQQHKDADIMDASFLERINVNAYYVKFDITDLQCTLCDQQMNTIELLLEHLKKIHRRKVYTDINNRLVPFKFSGGTQEQLKCFMCLNIFSKFKALTEHMNTHYRNFICEICDAGFVTRSMAVTHTKTHKIGTFKCGYCPKIYNTKTKVANHERVKHTRTKQNICGICNERFTYYHSKQKHLIEVHDVKIEAKCLACERVFDTQKKLRVHVRKDHLMDKKHKCTACDKKFFSLNELRDHSIKHTGLKEFQCGKCFKSYGRKKTLVAHMKVHTERNRQEVIRKIRDLVKIEVEEDIDLQRIDNVFAEESYTKKAKSAKVHSKAAKSEKKSTDDSPKISRIDYVNRLRASVREILEFSNATPIRSRGGIGYACSFCERQFPVPADLKRYNALQHTQDISTFMKLKHLPVFYVKMDITSLQCNLCFHKIPTISQLIDHLNQVHNKNILIDVKKRIFPFKFESKELRCCECPSTYHAFKALQEHMHSHYSNYICDVCSAGFIIKSALRVHKATHELGSYKCAHCPKVLDSVGKRKMHEKYVHVSDLRFKCAYCDLRFNVSDAREKHQSTVHGAISIEYKCHACNKVLANRSSLRTHIKRHHLLQRLHQCPECDMRFFTPNELKKHMPKHTGIRDFKCDVCQKSFARQKTLKEHMRIHLNDRRFKCEHCDKAFVQKCSWRVHMRSKHGEIM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -