Basic Information

Insect: Carpatolechia fugitivella
Gene Symbol: -
Assembly: GCA_951230895.1
Location: OX579672.1:3876870-3883301[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 7.2e-06 0.00065 21.0 0.9 1 23 105 127 105 127 0.98

2 13 0.19 17 7.1 1.6 1 23 133 155 133 156 0.95

3 13 0.0053 0.48 12.0 1.1 1 23 162 185 162 185 0.95

4 13 6.7e-05 0.006 17.9 1.7 1 23 190 212 190 212 0.98

5 13 8.6e-06 0.00077 20.7 1.9 1 23 218 240 218 240 0.98

6 13 7.1e-07 6.4e-05 24.1 1.1 1 23 246 269 246 269 0.95

7 13 2e-06 0.00018 22.7 2.8 1 23 275 297 275 297 0.97

8 13 1.4e-05 0.0013 20.1 1.2 1 23 303 325 303 325 0.98

9 13 0.00023 0.021 16.3 2.0 1 23 331 353 331 353 0.99

10 13 8.4e-07 7.5e-05 23.9 1.3 1 23 359 381 359 381 0.98

11 13 1.2e-05 0.0011 20.3 0.9 1 23 387 409 387 409 0.98

12 13 0.084 7.6 8.2 3.3 1 23 415 434 415 434 0.95

13 13 0.0052 0.46 12.0 0.1 1 21 439 459 439 460 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	7.2e-06	0.00065	21.0	0.9	1	23	105	127	105	127	0.98
2	13	0.19	17	7.1	1.6	1	23	133	155	133	156	0.95
3	13	0.0053	0.48	12.0	1.1	1	23	162	185	162	185	0.95
4	13	6.7e-05	0.006	17.9	1.7	1	23	190	212	190	212	0.98
5	13	8.6e-06	0.00077	20.7	1.9	1	23	218	240	218	240	0.98
6	13	7.1e-07	6.4e-05	24.1	1.1	1	23	246	269	246	269	0.95
7	13	2e-06	0.00018	22.7	2.8	1	23	275	297	275	297	0.97
8	13	1.4e-05	0.0013	20.1	1.2	1	23	303	325	303	325	0.98
9	13	0.00023	0.021	16.3	2.0	1	23	331	353	331	353	0.99
10	13	8.4e-07	7.5e-05	23.9	1.3	1	23	359	381	359	381	0.98
11	13	1.2e-05	0.0011	20.3	0.9	1	23	387	409	387	409	0.98
12	13	0.084	7.6	8.2	3.3	1	23	415	434	415	434	0.95
13	13	0.0052	0.46	12.0	0.1	1	21	439	459	439	460	0.93

Sequence Information

Coding Sequence: ATGATCACCCCGAGGACATCAGATGGTGATTCAGCTTATACGTACTGCATATGTGGTGCGTGCGTCCCGCGGCTCCGCGACGCTCTGCTGTTCCGGAGACAAGTGCAAGCCTGCGAGGAGAAATTTGCCGAATACTGCACTGCAGGATCAGAACCATTTCCTACTGTGGTGAAGAAAGAAGAGGACATAAATGAAGAGTGGTCGGGCTCTTGCGTATGGTCGACGGCGCGCGAGCAGTCGCCCtccgcgccgcgccgctcgccgccggGCAGCGataAATCAAGCATTCAACCTAAGAAGACGAAAAAGAAATATTCTTGCGATTTCTGTGAAAAACAGTTCTCCTACAATGGTTCTTTGGAGATGCACATGAAAATACACAATGGAGAGAAGTTGTACCGCTGCTTCCTATGCAACTCTGAGTACGGGCTCAACATAGACTTGACCAAACACATCAGCCAACACCACGTAGAAAACGGAAAGTATCCATgtaaaatatgcaacaaagaGATATTTGATAAACCGTCAAAGTTGAAAACTCATTTGAAATTTCACTTCGAACAGAAATTCAAATGCGGCTTTTGTGAGAAAGAATTCCAACGGAAGAAAGGTTTAAAGGAGCATTTGAAAGTGCACTCCGGTGAGAGGAAGTATTCCTGTAATATTTGTTCGAAGGCGTTTGGTCATAATCAGACGTTGAAGTCACACATTTTAACCCACACAGGCGAACGACCTTACGTATGTGATGTGTGCGGTAGGAGGTTCCCACAACGGACACATTTAAAACGacacatatttataatacacGCCGGCTTGAAACCACATTCGTGCAATATCTGTAACAAACAGTTTTCAAGTAAAAGCTATTTGACGATACACGAAAGGGTGCATAGTGGTGAGAAACCTTTCTCCTGTGAAGTTTGCAAGAAGAACTTCACAGCCTACACGACACTGAAAGTGCACATGAGAGTCCACACTGGTTTCAAACCGTACACATGTAGTTTTTGCTCGAGAACATTCGCTCAGATGGCAAGTTTCAAACTTCATGAGCGAACTCACACCGGAGCCAAGCCTTACTCTTGTGAAATATGCAAGAAGAGGTTCTCTGACAATGGTTACCTAAAAATACACAAACGTATACACACTAATGAGAAACCGTTTGAATGTGACGTGTGCAAACGGGCGTTTAGAGAGACCGGCCAATTGAAGAGGCACAAACGGATCCATACAGGGATAAAACCTTACACTTGTAAGATATGCAACAAGCAAATCGGCAACTTGTCAAAGCATATGAGGGTGCACACGGATGAACGATACAACTGCAACGTTTGTAACAAGCAGTTTTCTTTGAACGGTGACGTGAGGTTACACGCTAGATTGGATGATCGACCGTATTCCTGCGCTGAGTGCAAAAGTGCGAGCAGCCATGATGAGGGGTCAAAAAACATCAGTGATCGTGAGATTACAGACAGCTAA
Protein Sequence: MITPRTSDGDSAYTYCICGACVPRLRDALLFRRQVQACEEKFAEYCTAGSEPFPTVVKKEEDINEEWSGSCVWSTAREQSPSAPRRSPPGSDKSSIQPKKTKKKYSCDFCEKQFSYNGSLEMHMKIHNGEKLYRCFLCNSEYGLNIDLTKHISQHHVENGKYPCKICNKEIFDKPSKLKTHLKFHFEQKFKCGFCEKEFQRKKGLKEHLKVHSGERKYSCNICSKAFGHNQTLKSHILTHTGERPYVCDVCGRRFPQRTHLKRHIFIIHAGLKPHSCNICNKQFSSKSYLTIHERVHSGEKPFSCEVCKKNFTAYTTLKVHMRVHTGFKPYTCSFCSRTFAQMASFKLHERTHTGAKPYSCEICKKRFSDNGYLKIHKRIHTNEKPFECDVCKRAFRETGQLKRHKRIHTGIKPYTCKICNKQIGNLSKHMRVHTDERYNCNVCNKQFSLNGDVRLHARLDDRPYSCAECKSASSHDEGSKNISDREITDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01403674;
90% Identity: -
80% Identity: -