Cfug032303.1
Basic Information
- Insect
- Carpatolechia fugitivella
- Gene Symbol
- -
- Assembly
- GCA_951230895.1
- Location
- OX579674.1:3301524-3306821[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.0043 0.38 12.3 1.1 1 23 76 99 76 99 0.94 2 27 2.1 1.9e+02 3.8 0.1 2 23 125 147 124 147 0.92 3 27 0.048 4.3 8.9 3.3 3 23 172 192 170 192 0.96 4 27 0.0015 0.13 13.7 0.5 1 23 196 218 196 218 0.97 5 27 0.0056 0.51 11.9 0.1 1 23 225 248 225 248 0.97 6 27 0.0051 0.46 12.0 1.4 2 23 256 278 255 278 0.94 7 27 7.7e-05 0.0069 17.7 0.5 2 23 284 306 283 306 0.96 8 27 1.8 1.6e+02 4.0 1.1 1 23 312 335 312 335 0.89 9 27 1.7e-05 0.0016 19.8 1.6 1 23 341 364 341 364 0.98 10 27 0.84 76 5.0 2.8 2 23 424 446 423 446 0.91 11 27 0.067 6.1 8.5 0.2 2 23 472 494 471 494 0.93 12 27 0.048 4.3 9.0 0.1 3 23 518 538 517 538 0.98 13 27 0.0018 0.16 13.4 0.2 1 23 542 564 542 564 0.97 14 27 0.00033 0.03 15.8 0.1 2 23 570 592 570 592 0.96 15 27 0.0037 0.34 12.4 2.1 1 23 598 621 598 621 0.98 16 27 2.7e-06 0.00024 22.3 0.4 2 23 628 650 627 650 0.96 17 27 1.7e-05 0.0015 19.8 1.4 1 23 656 678 656 678 0.95 18 27 0.0083 0.75 11.3 2.3 1 23 736 759 736 759 0.94 19 27 0.48 43 5.8 0.3 2 23 786 808 785 808 0.95 20 27 0.17 15 7.2 0.9 2 23 831 852 830 852 0.96 21 27 1.5 1.3e+02 4.3 1.1 1 23 856 878 856 878 0.93 22 27 0.00011 0.01 17.2 0.8 2 23 884 906 884 906 0.97 23 27 0.043 3.9 9.1 0.3 2 23 912 934 911 934 0.92 24 27 0.0034 0.3 12.6 0.6 2 23 942 963 942 964 0.93 25 27 4.9e-05 0.0044 18.4 1.1 1 23 970 992 970 992 0.95 26 27 0.00022 0.02 16.3 1.0 1 23 998 1020 998 1020 0.99 27 27 0.0001 0.0093 17.3 1.2 1 23 1026 1049 1026 1049 0.97
Sequence Information
- Coding Sequence
- ATGAAGAAGAAACGGCCTGTcaaagattatttttcttttataggCAAAACGGGAGCAAGCAAAAGACAAATGCCGATAAAAGAAGAATTCACCGCtacgcgacctgtagataaGTTAATTTATAAAGAGAAAAATCTTCCAGAAATGAAGAAACAATGGCACAATCTCACTACTCTACTTAAATTCTCTAATGTTACCCCTTTTAAGGATCGCAATGACGCAGGATATACCTGCGCTTACTGTTTTAAGTCGTACCCCGACCCTGATGTGCTCAGAAGTCATACGCACAACGATCATGATAAAGAAAAACCCACATACAAAGCTGGTTCCGGAATGGCCAATTTCGTGGCATTCCTAGACATAGTAGacttaaaatgtttaatttgtgAAACATCTATGGATAATCTAAAAACTCTGATGGAGCATTTGGTTTCAGATCATGATAAGAAATTTTACTTGGGCATCACGGACTATTTTCAGCCTTTTAAACTCACGAGTAACCAGCAAATGAACTGTTGTCTCTGCAATGAGCCTTTCCACAACATGAAACTATTGATGCAGCACATGAATGTACACTATAGGAACTTTATTTGCACGACATGTGGGGCTGGATTTGTAAACAGTTTCCGTTTGAACAGACACGAAACTACTCATGGTAAAAAGAAATCGAGCTTCCCTTGCAAAATTTGCGGTCTTGTTTTTGACGCAGAATCCAAGAAAAAAGCCCACGTAAACACCGAGCACAAAGGAATAGCTGGCGACAGCGTCTGCCAGATTTGTAAAGCGAGATTTAAGAATTACTACCAGAAAACGCGTCACATGTCTCAAGTACACAATGTTGAAGGTATTAAATGTGATATGTGCGAGAAACGGTTCAGTTTGAAATCTACTTTGGTCCTTCACATACGCAATGTGCACCTGAAAGAAAGACCTTATGAATGTACAGTGTGCTCTATGGGGTTCTTTATCAAGAGGCATATGTTGGGGCACTACATGGCCACGCATACTAATGAGAGGAAGTTTAAATGTGATGTTTGCGGTAAAGCTTACGCTACACAGAATTCTAGGAGAAAGCATATGAAGAAAAATCATGGCGTCGCCAAGAgtaTAACCAGCAGAAATAAATCGAAGAAGGTAACTAAGACGGCATTGAGGAAGGCCCGCAGCGCTGCCATGCGAACCGTAAGGGCACATAAGAAAAACCTCCTTAAAATTCTAATGTTTTCAAACGCGAATCCAATCAGAGACAAAGATATGTTGCAGGGCATACAGTGCCATTATTGCAAAACTAAAATGAAAGAATCTCAAAATCTCAAAGAACATTTCGTTAAGGAGCATAGAAACGAAGAATTTATCACATCCAAAATGAAGGACTTCCTCAAAACTGTTTGGAAGCTGGATATTACCGATCTACGATGTGAAGTATGTGACTATCGTGTAGAGACAATTaaagatttaataaaacatttctCGAGTGCACATGGCATGGACGTCGAAACTGATGTAGAAGACATTTTTCTTCCGTTTAAGTTTAATGCGGATGTACTCCTATGCGCGATTTGTAACGTAGAGTTCCCAGTGTTCAAACTTCTTCGAGAGCATATGAATAACCACTTCATGAACTTTGTGTGTGATATATGCAATGCTGGATATGTTACCAATGAGCTGTTATATCGCCACAAGATTAGACATCAAGTGTCTGAGAACTCCTGCCCAATTTGTGAAAAGGTTTTCAGTAGCAAACCGCGAGTGAACCAACACATAAAAATTgttcatttcaataataaaagatACAAATGTAACTATTGCGATGAGCGTTTCATAGAGTTCAACATGAAACTGCGTCATATGAAAAAAGTTCACGACAAGAATCTGGGATTGTCTTGTCAAATATGTGACAAGATGTTCGTAACTCCGAGTTCCCTGAGAATGCATGTCAGATCATACCACTTGTGCGAAAAGAGATTTCTCTGTTCAGTGTGCGGAAAAAGATTCTTTACTAAGAGTTTGCTGAGAAATCACCGAGAAATCCACAGAGATTTTGATAGTTTGACGTGTGACATTTGCCTTGCTGAGTTTCTTAATTCCGGCATACCAAAGATTAACTGGGTTGGAGACCATAATAAGGTCGAGAAGCTTCGATCAAACATTCAACAAATCTTACTCTACTCCAATGCTACAACAATCAAGAGAGGCGGCCTCAGCTACAGTTGTGACTTTTGTTGGGAACATTTTCCTAATCCTCATAAACTCAAACAACACAACTTAGTTGATCACAGCGACGAAGAACGTCGTGTGTATATGAAACATTCTAGTTTGAGCCAATTCATTGTTAAACTTGATATTACTGCTTTACAATGCAAGCTGTGTGACAACAATATTGAAGACGTAAAAAATCTcttaacacatttaaaaaatgacCACGGAAGGACAGTTTATTTGGATAAAGATCGTCATTTCGTGCCATTCAAATTTGACGATGATAATCTTACATGTGCTATATGCCAAAATGTGTATCATTCTTTTAAACCACTTCAAGAGCACATGAATTCACACTACAGTAATTATGTTTGCGAGCAATGTTCTGCTGGGTTTGTTTGTCGGAACAGTTTGCGCGCTCACAAATACGGACATAAGGAAGCAGAAGAAAAGTGCACAATTTGCTCCAAAGCTTTTCCTACACGTGTACGCTTAAACAACCACATGAAAAATGTCCATTCAGGACGCAATATCGTATGCTCCTTTTGTGGAGAATCATTTGGTGATTATAAATCACGCTTTAAACATTTGTCGGAGGTTCACGACGTCCAGTTCCAGATTAGGGAATGTCAAGCTTGCGGTAAAACGTTTCCCACAGCGGCCAGATTGCAGGGTCATTACAAATATCATCATTTAATGGAACGTAATCACGCATGCGTAGTATGTGATAAGAGGTTTTATACTAAAGGATCTTTAAATATCCATATGGTGAAACACACCGGTACTAGGGATTTTCAGTGCGATATTTGCCAGAAGTGGTACGGTACAAAGAAGACTTTGAAGGAACATATGCGAATACATTTAAATGACCGTCGATTCGTATGTACCCTTTGTGGAGAGGCATTTGTGCAGAAAACGTGTTTGAATGGTCATCTTCGCTCAAAACACATGGAAACATTGTAA
- Protein Sequence
- MKKKRPVKDYFSFIGKTGASKRQMPIKEEFTATRPVDKLIYKEKNLPEMKKQWHNLTTLLKFSNVTPFKDRNDAGYTCAYCFKSYPDPDVLRSHTHNDHDKEKPTYKAGSGMANFVAFLDIVDLKCLICETSMDNLKTLMEHLVSDHDKKFYLGITDYFQPFKLTSNQQMNCCLCNEPFHNMKLLMQHMNVHYRNFICTTCGAGFVNSFRLNRHETTHGKKKSSFPCKICGLVFDAESKKKAHVNTEHKGIAGDSVCQICKARFKNYYQKTRHMSQVHNVEGIKCDMCEKRFSLKSTLVLHIRNVHLKERPYECTVCSMGFFIKRHMLGHYMATHTNERKFKCDVCGKAYATQNSRRKHMKKNHGVAKSITSRNKSKKVTKTALRKARSAAMRTVRAHKKNLLKILMFSNANPIRDKDMLQGIQCHYCKTKMKESQNLKEHFVKEHRNEEFITSKMKDFLKTVWKLDITDLRCEVCDYRVETIKDLIKHFSSAHGMDVETDVEDIFLPFKFNADVLLCAICNVEFPVFKLLREHMNNHFMNFVCDICNAGYVTNELLYRHKIRHQVSENSCPICEKVFSSKPRVNQHIKIVHFNNKRYKCNYCDERFIEFNMKLRHMKKVHDKNLGLSCQICDKMFVTPSSLRMHVRSYHLCEKRFLCSVCGKRFFTKSLLRNHREIHRDFDSLTCDICLAEFLNSGIPKINWVGDHNKVEKLRSNIQQILLYSNATTIKRGGLSYSCDFCWEHFPNPHKLKQHNLVDHSDEERRVYMKHSSLSQFIVKLDITALQCKLCDNNIEDVKNLLTHLKNDHGRTVYLDKDRHFVPFKFDDDNLTCAICQNVYHSFKPLQEHMNSHYSNYVCEQCSAGFVCRNSLRAHKYGHKEAEEKCTICSKAFPTRVRLNNHMKNVHSGRNIVCSFCGESFGDYKSRFKHLSEVHDVQFQIRECQACGKTFPTAARLQGHYKYHHLMERNHACVVCDKRFYTKGSLNIHMVKHTGTRDFQCDICQKWYGTKKTLKEHMRIHLNDRRFVCTLCGEAFVQKTCLNGHLRSKHMETL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -