Cfug030845.1
Basic Information
- Insect
- Carpatolechia fugitivella
- Gene Symbol
- -
- Assembly
- GCA_951230895.1
- Location
- OX579672.1:3010555-3015729[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.6e-05 0.0015 19.9 6.5 1 23 18 40 18 40 0.97 2 18 1.6e-05 0.0015 19.9 6.5 1 23 50 72 50 72 0.97 3 18 1.6e-05 0.0015 19.9 6.5 1 23 82 104 82 104 0.97 4 18 1.2e-06 0.0001 23.5 4.3 1 23 114 136 114 136 0.98 5 18 1.2e-06 0.00011 23.4 4.3 1 23 146 168 146 168 0.98 6 18 1.2e-06 0.00011 23.4 4.3 1 23 178 200 178 200 0.98 7 18 1.6e-05 0.0015 19.9 6.5 1 23 210 232 210 232 0.97 8 18 1.2e-06 0.0001 23.5 4.3 1 23 242 264 242 264 0.98 9 18 1.2e-06 0.0001 23.5 4.3 1 23 274 296 274 296 0.98 10 18 1.2e-06 0.0001 23.5 4.3 1 23 306 328 306 328 0.98 11 18 1.2e-06 0.0001 23.5 4.3 1 23 338 360 338 360 0.98 12 18 1.6e-05 0.0015 19.9 6.5 1 23 370 392 370 392 0.97 13 18 1.2e-06 0.0001 23.5 4.3 1 23 402 424 402 424 0.98 14 18 1.6e-05 0.0015 19.9 6.5 1 23 434 456 434 456 0.97 15 18 1.2e-06 0.0001 23.5 4.3 1 23 502 524 502 524 0.98 16 18 1.2e-06 0.0001 23.5 4.3 1 23 534 556 534 556 0.98 17 18 1.2e-06 0.0001 23.5 4.3 1 23 566 588 566 588 0.98 18 18 0.00011 0.01 17.2 7.6 1 23 619 641 619 641 0.98
Sequence Information
- Coding Sequence
- atgTCGGGCACGTACAAGACCCACATGCGCAACCACGCGTCGCTGCCCGTGTTCTGCTGCGAGATGTGCGACAAGTGCTTCTCCGACTCGAGCAACTTCGCCAAGCACAAGAAGGTGCACAATGTGCAGGGTGTCAATGACAGCCAGTTCTGCTGCGAGATGTGCGACAAGTGCTTCTCCGACTCGAGCAACTTCGCCAAGCACAAGAAGGTGCACAATGTGCAGGGTGTCAATGACAGCCAGTTCTGCTGCGAGATGTGCGACAAGTGCTTCTCCGACTCGAGCAACTTCGCCAAGCACAAGAAGGTGCACAATGTGCAGGGTGTCAATGACAGCCAGTTCCGCTGCGAGATGTGCGACAAGTGCTTCTCCGACTCGAGCAACTTCGCCAAGCACAAGAAGGTGCACAATGTGCAGGGTGTCAATGACAGCCAGTTCCGCTGCGACATGTGCGACAAGTGCTTCTCCGACTCGAGCAACTTCGCCAAGCACAAGAAGGTGCACAATGTGCAGGGTGTCAATGACAGCCAGTTCCGCTGCGACATGTGCGACAAGTGCTTCTCCGACTCGAGCAACTTCGCCAAGCACAAGAAGGTGCACAATGTGCAGGGTGTCAATGACAGCCAGTTCTGCTGCGAGATGTGCGACAAGTGCTTCTCCGACTCGAGCAACTTCGCCAAGCACAAGAAGGTGCACAATGTGCAGGGTGTCAATGACAGCCAGTTCCGCTGCGAGATGTGCGACAAGTGCTTCTCCGACTCGAGCAACTTCGCCAAGCACAAGAAGGTGCACAATGTGCAGGGTGTCAATGACAGCCAGTTCCGCTGCGAGATGTGCGACAAGTGCTTCTCCGACTCGAGCAACTTCGCCAAGCACAAGAAGGTGCACAATGTGCAGGGTGTCAATGACAGCCAGTTCCGCTGCGAGATGTGCGACAAGTGCTTCTCCGACTCGAGCAACTTCGCCAAGCACAAGAAGGTGCACAATGTGCAGGGTGTCAATGACAGCCAGTTCCGCTGCGAGATGTGCGACAAGTGCTTCTCCGACTCGAGCAACTTCGCCAAGCACAAGAAGGTGCACAATGTGCAGGGTGTCAATGACAGCCAGTTCTGCTGCGAGATGTGCGACAAGTGCTTCTCCGACTCGAGCAACTTCGCCAAGCACAAGAAGGTGCACAATGTGCAGGGTGTCAATGACAGCCAGTTCCGCTGCGAGATGTGCGACAAGTGCTTCTCCGACTCGAGCAACTTCGCCAAGCACAAGAAGGTGCACAATGTGCAGGGTGTCAATGACAGCCAGTTCTGCTGCGAGATGTGCGACAAGTGCTTCTCCGACTCGAGCAACTTCGCCAAGCACAAGAAGGTGCACAATGTGCAGCCAGTTCTGCTGCGAGATGTGCGACAAGTGCTTCTCCGACTCGAGCAACTTCGCCAAGCACAAGAAGGTGCACAATGTGCAGGTATGTACTATAAGCTGTCCGTACAGGGTGTCAATGACAGCCAGTTCCGCTGCGAGATGTGCGACAAGTGCTTCTCCGACTCGAGCAACTTCGCCAAGCACAAGAAGGTGCACAATGTGCAGGGTGTCAATGACAGCCAGTTCCGCTGCGAGATGTGCGACAAGTGCTTCTCCGACTCGAGCAACTTCGCCAAGCACAAGAAGGTGCACAATGTGCAGGGTGTCAATGACAGCCAGTTCCGCTGCGAGATGTGCGACAAGTGCTTCTCCGACTCGAGCAACTTCGCCAAGCACAAGAAGGTGCACAATGTGCAGCAACTTCGCCAAGCACAAGAAGGTGCACAATGTGCAGGTATGTACTATAAGCTATCCGTACAGGGTGTCAATGACAGCCAGTTCCGCTGCGACATGTGCAACAAGTGTTTCTCCAACTGCAGCAACTTCGCCAAGCACAATAAGGTGCACAATGTGCAGGTATGTACTATAAGCTATCCGTACAGGGTGTCAATGACAGCCAGTTCCGCTGCGAGATGTGCGTGTTAG
- Protein Sequence
- MSGTYKTHMRNHASLPVFCCEMCDKCFSDSSNFAKHKKVHNVQGVNDSQFCCEMCDKCFSDSSNFAKHKKVHNVQGVNDSQFCCEMCDKCFSDSSNFAKHKKVHNVQGVNDSQFRCEMCDKCFSDSSNFAKHKKVHNVQGVNDSQFRCDMCDKCFSDSSNFAKHKKVHNVQGVNDSQFRCDMCDKCFSDSSNFAKHKKVHNVQGVNDSQFCCEMCDKCFSDSSNFAKHKKVHNVQGVNDSQFRCEMCDKCFSDSSNFAKHKKVHNVQGVNDSQFRCEMCDKCFSDSSNFAKHKKVHNVQGVNDSQFRCEMCDKCFSDSSNFAKHKKVHNVQGVNDSQFRCEMCDKCFSDSSNFAKHKKVHNVQGVNDSQFCCEMCDKCFSDSSNFAKHKKVHNVQGVNDSQFRCEMCDKCFSDSSNFAKHKKVHNVQGVNDSQFCCEMCDKCFSDSSNFAKHKKVHNVQPVLLRDVRQVLLRLEQLRQAQEGAQCAGMYYKLSVQGVNDSQFRCEMCDKCFSDSSNFAKHKKVHNVQGVNDSQFRCEMCDKCFSDSSNFAKHKKVHNVQGVNDSQFRCEMCDKCFSDSSNFAKHKKVHNVQQLRQAQEGAQCAGMYYKLSVQGVNDSQFRCDMCNKCFSNCSNFAKHNKVHNVQVCTISYPYRVSMTASSAARCAC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -