Cfug014459.1
Basic Information
- Insect
- Carpatolechia fugitivella
- Gene Symbol
- -
- Assembly
- GCA_951230895.1
- Location
- OX579654.1:14945654-14950032[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6e-08 5.7e-05 23.7 0.0 2 37 8 43 7 48 0.87 2 2 3.8 3.6e+03 -1.3 0.2 17 24 130 137 126 138 0.82
Sequence Information
- Coding Sequence
- ATGAATGAGAGAAAATACAAGAAAGAATCAATGGAAAAAGCCATTGAGGCTGTTTTAAATGGAGCCCGACCATCGGATGCTGCTAAAAGTTTTGGAGTACCCAGGACAACTTtattagataaagtaaatggcCGTAGTTCATTGGATTGTAGAAAAGGACCTACAACGGTCTTAACCATGGAAGAGGAAGGTCATTTACAGAACTGGTTAATCTATATGGCAGACAGTGGATTCCCAGTCACCAAAGATAAACTTATTGATAGCGTTAGCATCCttgtaaaaaaattgaatagaaAACATCCATTTCCTCAAGGTCGACCAGGTCGGCATTGGTACGAAAGTTTCATTAAAAGACATCCAGAAGTTGGAAAAAGAGTCGCTCAAAATCTAAGCCAATCCCGAGCAGCGGTGAAAGAAGAGGACATAAGAACCTGGTTCAAAGAGGTTGAAGATTACTTTAGTGTCGCTCATCTGGAAGAAGTTTCGAAGGATCCAAGAAGAATCTTCAATTGTGACGAAAGTGCATTTTTTTTGTCTCCTACCGATAACAAAGTCCTGGCAAAACGTGGCTCCAAAAATGTATATAGTGTTACTCCAAGTGGAGAAAAAGAGTGTGTAACAGTTCTTTTAACAGCCAACGCGGCAGGTGAATTGGCTCCTCCAGGCGTGCTTTTTAAACTTAAGTCAATCCCTCAAAAAATTTCGAAATCAGCGCCCAACAACTGGGGACTGGGACACACGCAAAAGGgctggatgacgggagaagcgtttTACGAGTACatgacaaacgtattttttcccTGGGTAGAAAAGAATAACATTCCACtaccaataatatttttcttagatGGTCATTGCTCGCACACAACTCTGCCACTAAGTAATTTTtgcaaagagaaaaatataacGCTCATTTCTCTTTTTCCTAATGCCACTCAACTTCTCCAACCAATGGACGTAGCCGTTTTTCGTCCACTGAAAAGAATATGGAAGAAAACTGTCTACAACTGGCGTAACGAAAATCAGTTTGTGaagctaaaaaaagaaaacttttgtCCGCTGCTGAACAAAACTCTTCAAGAACTAGATCCTACCTGGATCATTAATGGGTTTCGTAAATGTGGTTTATCCCCATTTAATGCAAATAGTGTAGACTATTCGAAATGTGTTACTAGTAACACAAGACAGTATTCAGAAAGCCAAAATGTTGCGGAGAAATCGCAATCCTTGGTCGAAAAAGAAAagcaattcaatttttttgaaTCAAATATAAGTCCTACCAAACTAAAAACTTTTAATGACAACATTGGTCAAACATGGAAAGGAGATAAATCATTGGAAGGTTTATATAATGTCTGGAAGAAAATGAAAAGCCAAATATCTAGCACTCCAAATATCACCACTACAGCCAAAGAATTGAATAAATCTGCAGTGATTGGAGAAAACGTAGACGCTCAAGTGAATGTGACTCAACAAAATTTTCAACTGAGTACTACATCAGAAAGCGATAAAATTGTTCATGAATATAATCTTTCAGAAGATTTTGGCAATTTTTCAGGATTGAGTCATATTCTGGATTCAAACTGTTCTCTGGACAATGTTTCTGGATTTGACTTGGCATGCGACGAAAAAGATAACCAGTGTACCAATACGGGAAATATAGAATTGTTTGAGGTTGTTGACGGAACTCTTACCAAAGTCTCTTCTGACCCTGTAATGCCTTTGGATACTGACATTCCAATGTATGCTGATGTGCCTATTTTGGAGGATTTCGACAAAAAATCTCCCACTTCTGACAAAAAAGGCTCCAAAATTCCATCAGGGCACGTAATTCGAACGAATGGAACTAATCCAATTTACTTAAAACCAAGTAACAGCTTGTATAAAGGTCACACAATGTCATTAGATTTTGAAAACAACACGCGAGACTGCAATAAATCCAAAATCACGAAAGCAGAACCACCGCTATCTATAATTGAAGAACAATCCTTGCCTCTGTACAAGACACcaacaaagaaaacaataataacttCAACAATTGTTTCTCCTTCTTTGCCATTCGAAACCATGGTACATAGTTACAAGACCTATGAACATCCCACCCTTACAAAAATAGAAGTATCCCAACCAACAACTTTGTCTTTGTCACAACCGATGAATTCCACGTCTCAGGATAGAGAATATACGAAATCTAAATTGGTATCTGCAAACTCTAAAGTAACATCCACAGTTACTTCCTGTTCAATTAAGATGACTTATGCAAAGACTGAAACTTTGAATGTTACAAAACTTGAGGTACGTACTCCGACAAAACTTGCTGAATCACAACTATCTACAACCACACACATAACCATGGCATGGTCAGCAAAAGACAATGCAAAAAAGAATAACTATGGTCATCTAGCTAATGTGCCAACACCGTTTAAGGAAGCGATGTTTTGGCCCGAAATAAGCACGATAACAGATGTGAAACCAAAAGTAAAAGTACCAAGTGAATTAGCTTTTTCTCAGTTGCGTGGTAAAGTCGGTTAA
- Protein Sequence
- MNERKYKKESMEKAIEAVLNGARPSDAAKSFGVPRTTLLDKVNGRSSLDCRKGPTTVLTMEEEGHLQNWLIYMADSGFPVTKDKLIDSVSILVKKLNRKHPFPQGRPGRHWYESFIKRHPEVGKRVAQNLSQSRAAVKEEDIRTWFKEVEDYFSVAHLEEVSKDPRRIFNCDESAFFLSPTDNKVLAKRGSKNVYSVTPSGEKECVTVLLTANAAGELAPPGVLFKLKSIPQKISKSAPNNWGLGHTQKGWMTGEAFYEYMTNVFFPWVEKNNIPLPIIFFLDGHCSHTTLPLSNFCKEKNITLISLFPNATQLLQPMDVAVFRPLKRIWKKTVYNWRNENQFVKLKKENFCPLLNKTLQELDPTWIINGFRKCGLSPFNANSVDYSKCVTSNTRQYSESQNVAEKSQSLVEKEKQFNFFESNISPTKLKTFNDNIGQTWKGDKSLEGLYNVWKKMKSQISSTPNITTTAKELNKSAVIGENVDAQVNVTQQNFQLSTTSESDKIVHEYNLSEDFGNFSGLSHILDSNCSLDNVSGFDLACDEKDNQCTNTGNIELFEVVDGTLTKVSSDPVMPLDTDIPMYADVPILEDFDKKSPTSDKKGSKIPSGHVIRTNGTNPIYLKPSNSLYKGHTMSLDFENNTRDCNKSKITKAEPPLSIIEEQSLPLYKTPTKKTIITSTIVSPSLPFETMVHSYKTYEHPTLTKIEVSQPTTLSLSQPMNSTSQDREYTKSKLVSANSKVTSTVTSCSIKMTYAKTETLNVTKLEVRTPTKLAESQLSTTTHITMAWSAKDNAKKNNYGHLANVPTPFKEAMFWPEISTITDVKPKVKVPSELAFSQLRGKVG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -