Ckad013306.1
Basic Information
- Insect
- Caradrina kadenii
- Gene Symbol
- -
- Assembly
- GCA_947462355.1
- Location
- OX381700.1:752494-755935[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.14 8.1 7.2 1.2 2 23 59 80 58 80 0.95 2 12 0.00014 0.0083 16.6 0.5 2 23 87 109 86 109 0.95 3 12 0.00059 0.034 14.6 1.7 1 23 122 144 122 144 0.98 4 12 0.025 1.5 9.5 4.1 1 23 150 172 150 172 0.99 5 12 0.025 1.4 9.5 1.4 1 23 179 202 179 202 0.96 6 12 0.08 4.6 7.9 0.8 2 22 211 231 210 231 0.95 7 12 0.78 45 4.8 4.2 1 23 327 349 327 350 0.94 8 12 0.25 14 6.4 0.6 1 20 358 377 358 379 0.91 9 12 7.2 4.2e+02 1.8 5.1 2 23 387 408 386 408 0.95 10 12 0.01 0.58 10.8 8.3 1 23 411 434 411 434 0.97 11 12 5.3 3.1e+02 2.2 2.2 2 23 440 461 439 461 0.86 12 12 0.0017 0.098 13.2 4.7 1 23 467 489 467 490 0.96
Sequence Information
- Coding Sequence
- ATGTCGGGTAGGGTGGAAGCGGAACAGCATGAGGTCGACATGCTAAGCATGTTTGCTAGCGTGTGGGTGAAGGTGGAAGTCGAGGAAAACGATGAAGGTTTCCCGAACCCTCTTGATGTTGAGCAAGAAGAAATAAAAAAGAAGACGAATGCGAATCGCAACAAGAAAGTCCTAAAATGTGACTCGTGTGAATATACAACCGTCTATAGGAACTGCCTAAACCTCCATATATTAGGACATACCAACTCCAAACCACTCTCATGTAGCCTGTGCGAGTACACGACCAAGTACCCGAGCTCCTTGCAACGGCACCTAATGATACAGCATGAATTGCAGAAGACAATCGACCAAAAACTTGACAGCTACGATTGCGATGAATGTAGTTACACAACTTATTTTAAATGGAACTTGACAGCCCATAAGAGAAAGCACAAATTGGAGAAGCAGTATAAATGTGCTCACTGTTCCTATGAAACTGCTTACAGACATAACTATGTCAAGCATGGTAGGGTACACAATAAGCAAGAAGTCATTTTCAAATGTGATAAGTGTCCGTTTGTGACTAAGTTTGAAGGGCATATTTCAAGACATCTCGCTAAAATACACAATGAAGTGTCCGAGAAAGCGAACAAGTGTAATATGTGTGATTTTTCTACTAAAGTACAATGGAGATTGAATGTTCATAAACGGAGAAGTAAGCAGGATAAAGTTTTGAAGTGTTCTTCGTGTGATTTTGAAACACATTACATGTGCGAATCGAAGAAACATAAGTTGTCTCACTACACTGACGGTACTGCCTGTAAATTGAATGAGAGTAACGGTGAAATGACTTTTGATCTACAAGATTATGAACCTCCTGTAATTGAAGATCCAAATCTATCCGTTCATGAAAAGAGTAATAATTACATGTTGGATCCGAATTGTGAAATTGATTGGAAGAATATCAAGGTTATTGAGTCCAACTCGAAGGATCGCCCCTTCCAGTGCATCATGTGTTCTTACACCTCAAGATTCAAAGCGTCCGTACAACGTCATTACCAAAGACACCACACGGGGAACCAAAACCGCCCATACAAGTGTGTGAACTGTGAATTTTCAACGAAAACAAAAGACCAGATCGCTTTACACAACAAACGGAGTCAATCAGAAACAGTATTAGTCTGTCAAGAATGTCATTATACAACGCTGTTCAAATGTCAATTTGTAACTCATCAAAAGGTTCATTATCCGCACAAATGTACAGAATGCAACTATTCCTGCAAGCATAAGTATGAAATACAGAAGCATGTGTCTACTATGCATATGGGGAACGGTCTGAAGTGCCGCTTCTGTGATTATAGAGCTACGAGGAGAGAGAGTTTACTGTGCCATGAGACAATACACACTGGTAACAAACCATTTAAATGTAAGTTTTGTGATTACAAGTCGGTAAGGAAGTCTCTTTTGGACAACCACGTGAAGAGGCATCATAGCAATGTGAGTCGAAACCCAGTGATTGTAGCTGATACCAAGATTGAGTCTTTGAAAATCCCGGTCGGTGATAAAATAAGCAGTGAGGATCTTATACAGAATATACGTGAGCAAAATATTTCTTTGGAAGACATTTTGGATTCGCAAGATGAAAAGGATTTTACCGCCATTTTGAATTCTACACAACAGTCTAATAATGTAGTGCTATAG
- Protein Sequence
- MSGRVEAEQHEVDMLSMFASVWVKVEVEENDEGFPNPLDVEQEEIKKKTNANRNKKVLKCDSCEYTTVYRNCLNLHILGHTNSKPLSCSLCEYTTKYPSSLQRHLMIQHELQKTIDQKLDSYDCDECSYTTYFKWNLTAHKRKHKLEKQYKCAHCSYETAYRHNYVKHGRVHNKQEVIFKCDKCPFVTKFEGHISRHLAKIHNEVSEKANKCNMCDFSTKVQWRLNVHKRRSKQDKVLKCSSCDFETHYMCESKKHKLSHYTDGTACKLNESNGEMTFDLQDYEPPVIEDPNLSVHEKSNNYMLDPNCEIDWKNIKVIESNSKDRPFQCIMCSYTSRFKASVQRHYQRHHTGNQNRPYKCVNCEFSTKTKDQIALHNKRSQSETVLVCQECHYTTLFKCQFVTHQKVHYPHKCTECNYSCKHKYEIQKHVSTMHMGNGLKCRFCDYRATRRESLLCHETIHTGNKPFKCKFCDYKSVRKSLLDNHVKRHHSNVSRNPVIVADTKIESLKIPVGDKISSEDLIQNIREQNISLEDILDSQDEKDFTAILNSTQQSNNVVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00177699;
- 90% Identity
- iTF_00274083;
- 80% Identity
- -