Ckad017090.1
Basic Information
- Insect
- Caradrina kadenii
- Gene Symbol
- -
- Assembly
- GCA_947462355.1
- Location
- OX381702.1:2836385-2847678[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 7.1 4.1e+02 1.8 0.3 10 22 97 109 94 109 0.85 2 10 0.17 10 6.9 0.3 1 19 247 265 247 270 0.94 3 10 2.8 1.6e+02 3.1 0.3 1 23 302 325 302 325 0.93 4 10 0.0041 0.23 12.0 4.0 1 23 367 389 367 390 0.94 5 10 4.2e-06 0.00024 21.4 1.6 1 23 394 416 394 416 0.97 6 10 0.021 1.2 9.8 1.2 1 21 450 470 450 475 0.94 7 10 1.7e-05 0.001 19.5 0.8 1 23 483 506 483 506 0.96 8 10 3.1e-05 0.0018 18.7 2.4 1 23 512 535 512 535 0.98 9 10 3.4e-05 0.002 18.5 0.3 3 23 547 567 546 567 0.96 10 10 4.2e-05 0.0024 18.3 2.0 2 23 574 596 573 596 0.96
Sequence Information
- Coding Sequence
- ATGGACGACTGTCCAGAAGTAGAATTAAGGAAGCTGTGTTGTACATGTTTAAGTAGAGATAGAAAGTTGTTTCAGCTGTGCAGACTAATTGATGGTGTCAATAATTTATATTCGCTGTTATCCTTTGATTCGGAAGCTTACAGAGAGGGTTTTTACAAGGACACCGCTAGCTTGTACATATGCTGGGAATGCAGAGCTGTCATGTGCAGAATCACTCGGTTCAGGAAGCAAGCTTGTGCAGCACAGAAGGAGCTGACCAGCATAGCGGATGGTAGAACAGATATTCAAACTCGCAGCTTATCAAACCTAACTACCCACCACAAGACGACCTACCAAAAAATTATCTCGGAATCGAATACCATATCAACAGACAACTTCATTGACTGCGGACTAACCACAGACATTAAAAGCGAAAGCGAAGAGGACATACCTCTATCCGAACTCCATAGCAACTGGCTTTCTGATAACGAGACTCACATAGCCATACACACCATGGACTATAAAAATGAACTGTCAAATACCACTATAGACTACAGAGAGGAACTGTCAAATACCACCATGGAGTATAAAGAAGAACTGTCAAATACAGCCATAGACTATAAAGAGGACTTAGTGTATAAGTTGAAGAAGAAGAATACGAAAAAGAAAAGTTTGTTTTCTACTTCTCTGGTAAATGATAGTGAGTTGGAAGAAATTAGGGATGGTAGGAAAATGGAAGATAGTTTTGTAGATGCAAAGTTTAGATGTGATAGTTGTATTGAAGCGTTTAGAAGTAAAGAAGAATTAAATGAACATGATTCTTCCTTGCATGTTGAGAAACCAGACCACCTCCAATGCGATATATGCCTAGTCTACATCAGCCTAACATCGTACCAGGACCATAGAGAATCCCATTACCATAGACACATCTGTCAGCTTTGTGTGTATACAGCTTATAATATTAATGATATGTTGTCCCATCTGAGAAGTGGACATGCGATGAAGAATTTGGTTTTACCTTACAAAAGAAAAAAGAGTCGCCACAAGACAGCGGTTACAAACCTCGGGTCCAAACCTCCCCGGAAACCTTCCATGATGGACAAGAGAACGCCCTACGGATATTTGTGTACGGAATGTAATAAATATTTCGACAACAAGAATCAGAGATGGAAGCATGTGCAGCGTCACCATAGAGAAGGGTACAAGTGCGCGACGTGCGGCAAGCGGTTCGCCTTCAAGAATAATCTTACAAGACATGAACAACTCCACAAAGGGCCGCCACCTCGCGAGGAGTGCGCGGTGTGCCGCAAGATGATCCGTGTGGACCTGGTGAAGGTACACGCTCGGATCCACTCCGACAGGCAGCGGTTCAGCTGCGTGGAGTGCGCCAAGTACTTCGTGAGCCGGGCGTCCTATGAACACCACTTGAAGTACACGCAAGCGCATGCACAGAGTGATTTGCTAAAGTATAAATGTACGATGTGTGACAAAGGCTACAGGTCGCGCGGGGAGCTGAGAGACCATGTCAATTATCAGCATATGGGGAAGACACAGCACAAGTGCCCGGTGTGTGGGAAGGCGCTGGCAACTCGCCGGTGTGTCACACGACACATGCGTCGCGCGCACGACGGCGTCAAGGAAAGCGCAAGAGACAAAATATGTCAACAGTGTGGAAAGGCTTTCAGGGATAAGAAAGGTCTTCGCGAACACGAGCTAATCCACACAGGTGAACGACCTCTATCGTGTGAGATATGTGGCTGTACCTTCAGACAGAGCGCTTCTCTATACACGCACCGGAAGAGAGTACACAAGATCTACACTAGCGCTAAGAAAGTAACGTTACTAGAATAA
- Protein Sequence
- MDDCPEVELRKLCCTCLSRDRKLFQLCRLIDGVNNLYSLLSFDSEAYREGFYKDTASLYICWECRAVMCRITRFRKQACAAQKELTSIADGRTDIQTRSLSNLTTHHKTTYQKIISESNTISTDNFIDCGLTTDIKSESEEDIPLSELHSNWLSDNETHIAIHTMDYKNELSNTTIDYREELSNTTMEYKEELSNTAIDYKEDLVYKLKKKNTKKKSLFSTSLVNDSELEEIRDGRKMEDSFVDAKFRCDSCIEAFRSKEELNEHDSSLHVEKPDHLQCDICLVYISLTSYQDHRESHYHRHICQLCVYTAYNINDMLSHLRSGHAMKNLVLPYKRKKSRHKTAVTNLGSKPPRKPSMMDKRTPYGYLCTECNKYFDNKNQRWKHVQRHHREGYKCATCGKRFAFKNNLTRHEQLHKGPPPREECAVCRKMIRVDLVKVHARIHSDRQRFSCVECAKYFVSRASYEHHLKYTQAHAQSDLLKYKCTMCDKGYRSRGELRDHVNYQHMGKTQHKCPVCGKALATRRCVTRHMRRAHDGVKESARDKICQQCGKAFRDKKGLREHELIHTGERPLSCEICGCTFRQSASLYTHRKRVHKIYTSAKKVTLLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01119731;
- 90% Identity
- iTF_00273952;
- 80% Identity
- -