Ckad004252.1
Basic Information
- Insect
- Caradrina kadenii
- Gene Symbol
- -
- Assembly
- GCA_947462355.1
- Location
- OX381699.1:7545125-7550384[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 8.4 4.8e+02 1.6 3.5 2 23 143 165 142 165 0.89 2 12 1.3 76 4.1 1.7 1 23 171 193 171 193 0.95 3 12 0.2 12 6.7 0.1 2 19 200 217 200 217 0.94 4 12 0.0003 0.017 15.6 0.5 2 23 260 282 259 282 0.93 5 12 0.0064 0.37 11.4 0.9 1 23 288 310 288 310 0.98 6 12 0.0074 0.43 11.2 0.1 2 23 317 338 316 338 0.97 7 12 1 60 4.4 2.4 1 10 342 351 342 351 0.96 8 12 0.00051 0.03 14.8 0.7 2 23 384 405 383 405 0.97 9 12 0.012 0.71 10.5 1.8 1 23 412 435 412 436 0.92 10 12 8.6e-05 0.005 17.3 0.3 1 23 440 462 440 462 0.97 11 12 0.00015 0.0084 16.6 2.5 1 20 468 487 468 490 0.95 12 12 7e-05 0.0041 17.6 3.4 1 23 496 518 496 518 0.98
Sequence Information
- Coding Sequence
- ATGAATGGACCTGAATTCTGTCGATTTTGTGCGGTATTAAAACCTTCTAATATATTGTATGATCTCACATGCTGCACGGGTGTTCTGGAAGACGTAAAAAGGACATTAAAATTACTAAATATTGATTTTGTGAATTTTTCTGATGATGCGCTGCCTAAATCGATATGTGCCGGATGCTATCACAATTTGAAAAACTGTGGCTTCGTCTATGATACAGTATATATTTCGCAAAATGTGTTAACTGAATTGTATAGCACTAATGATGGTTTTGATAGAAAATTTGGCGAATCAGAAATAGTGCGTAAAAGGGATGACGACACTAGTTCAGAGGATGAAGCAGAGCTGGAGGTTGAGGAGTCTCCTACAGCTGCCGAGCAGGCTCCGGTTCCAGCACCAAATAAAGCAACCTGGTCCACATACCCAATCAAGTGTGACCAATGTGCACAGACTTGCAAAACAATTTTGGACTTAAAGGAACATTGCAAGAGTATACATGGACTGTTCCAGGGGTTCCGCTGCTCCGATTGTCAGGTCATGGTGCTAACGTTCCATGCATTTGTAAAACATGTTCGACAGCATCGTCCTGAGTTGATCGAATACTGTCCAGTTTGCGACATAAAAACTTCAGACCCTGATCACATCAACTTGCATCCAGAATCATTCTTAGACCACACAATGAATGTCCCACCAACCCAACCTGTCAGGGACCTGTCCAGATTCTTTGGTCCCAGGGTACGAGAGAGAGTTGTGGTCAACAGCTGGGAGGAATACCATTGGAGCTGTGTGCATTGCAACTTGGAGTTCACCACCCAAGGTCTTCTGAGGATTCATCTCAAAGACGTCCATATCTCATGCTTTGGATTCAAATGTATGGACTGCAACTCTGTCACCAAGACCTATGAAGAGTTTATAAAGCATGTGATTCGTCATCGACCTGCTTTAGGGAAAAAGTGCGAGTACTGCGACATTGCGGTAGAAGATCGTAGCCAATACGCCCTCCACGTCAAACAACATAAACGAGGCTACGAATGCCCCCTCTGTGGCGAATGCTTCCTCGATGAAGTAGTCTCATGGACACACAAATGCATGTACAAAGCTTACAAACCCAATATTAGGGTGACAAGAAAACAAGCAAAATCGAAGAAATTGACCTGTGAGACTTGCGGCCTGGTGTGCTCCGGCCCCGTCACGCTCCGCCGACACAAGCTGACACATTCCAAGAATGGGAAAGCATTTAGTTGCAAGACTTGCGCCAAGACGTACATCCTCCCGAGCACGTTAAAGACCCATAATTTGAATGTACATCACATTGAGACGTTTGATTGCGAGACCTGTAATAAAATCTTCGACACGGCGGCTGAGCTGCACGCTCATGTCGACACGCACGGCAGCGCCATGCCGTACAAGTGTCCTCAGTGCACGCGCCGATTCCGGCTGAATTATCATCTGCAGAACCACTTGCCGCTACACTCCGACAAGATGCCCCACACCTGTCAGGTCTGCAATAAAGGTTTTAAATACAAACACGCTTTGGTGGCCCACGAACGCTCGCATGTAAAACCTTACTTCCATCCTCAACCGCCTCAACCGCCGTTGGCAATCAGTTTGGAGAACAAGGTGGATGTTCCGCCGCCGCCAGCCCCGGTGAGCCGTGAGACGCAAGCGCAGCTCTATGTGACGGTCACTGATGGTTCAGAAGTGCTGAAGGGATGGGCTGATATCTTTTTGCAGAACGCAGAAAGAAATATCTGCAGTCCAAAATCCGGATAG
- Protein Sequence
- MNGPEFCRFCAVLKPSNILYDLTCCTGVLEDVKRTLKLLNIDFVNFSDDALPKSICAGCYHNLKNCGFVYDTVYISQNVLTELYSTNDGFDRKFGESEIVRKRDDDTSSEDEAELEVEESPTAAEQAPVPAPNKATWSTYPIKCDQCAQTCKTILDLKEHCKSIHGLFQGFRCSDCQVMVLTFHAFVKHVRQHRPELIEYCPVCDIKTSDPDHINLHPESFLDHTMNVPPTQPVRDLSRFFGPRVRERVVVNSWEEYHWSCVHCNLEFTTQGLLRIHLKDVHISCFGFKCMDCNSVTKTYEEFIKHVIRHRPALGKKCEYCDIAVEDRSQYALHVKQHKRGYECPLCGECFLDEVVSWTHKCMYKAYKPNIRVTRKQAKSKKLTCETCGLVCSGPVTLRRHKLTHSKNGKAFSCKTCAKTYILPSTLKTHNLNVHHIETFDCETCNKIFDTAAELHAHVDTHGSAMPYKCPQCTRRFRLNYHLQNHLPLHSDKMPHTCQVCNKGFKYKHALVAHERSHVKPYFHPQPPQPPLAISLENKVDVPPPPAPVSRETQAQLYVTVTDGSEVLKGWADIFLQNAERNICSPKSG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -