Ckad011657.1
Basic Information
- Insect
- Caradrina kadenii
- Gene Symbol
- -
- Assembly
- GCA_947462355.1
- Location
- OX381694.1:6664915-6676419[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.8e-05 0.0028 18.1 1.8 1 23 266 288 266 288 0.98 2 13 0.62 36 5.1 3.4 1 23 296 319 296 319 0.93 3 13 0.75 43 4.9 0.4 1 23 323 346 323 346 0.90 4 13 0.0065 0.38 11.4 2.3 1 23 421 443 421 443 0.99 5 13 0.00011 0.0061 17.0 2.7 2 23 452 474 451 474 0.96 6 13 1.8 1.1e+02 3.7 6.7 1 23 478 500 478 500 0.98 7 13 0.001 0.058 13.9 2.1 1 23 505 528 505 528 0.98 8 13 1.3 73 4.2 3.9 3 23 534 555 532 555 0.86 9 13 0.12 6.8 7.4 0.2 1 20 574 593 574 595 0.94 10 13 0.062 3.6 8.3 0.2 2 23 641 663 640 663 0.94 11 13 2.5e-06 0.00014 22.1 0.9 1 23 672 694 672 694 0.98 12 13 0.0014 0.08 13.5 0.8 3 23 702 722 700 722 0.96 13 13 4.7e-06 0.00027 21.2 2.6 1 23 728 751 728 751 0.98
Sequence Information
- Coding Sequence
- ATGTACAATCTCCAAGCGTGTATGGTGTGTTTCAGCACAAATGTTAAATTATTTAGCATGAGTAGTGGTAAATTACGACATGACTTCCATTTGATTTCTGGTATTAAGACTTGTCCCGGTGATGGCATGCCGGATTATCTATGTTTTCAATGTTCAAGTATCGTGAAAAACTTCAAAAGATTTCGTGATAAATGCCACCGAGCTCATTATGCTTTGAAAGAAATTTTAAGCAAAAATGATGAGATTAATAAAACAACTCTTCAAGACGTCAACCGCAAACTTCTTGATATCATGCCACCTCTATCTTTTATGAGTGTAGATAAGAGTCACTATGAAAAAGTTGTTTTCCACTGGAAAAGACAAAACCGCATTGATTTGAGTATTTCTTCCCAACATAACATAGCTGTACTTCACTGCAGTACCCTTACTCCTGATTTCACCTTTGATGGAGTAAACGATCCCAGCAACTTAGAATTTACTGAAGATAAAATCAAAAGAGACATTGATGAAACAGAACATGAAGAAATACCTGTTGAGTATGAAGTAGCCAAAGATGAGTCTGGTGGCTTCGTTTGTGGTACAACAGAAGACGCTAAAATAGCAGATTCATTTCTTGATAATGAGAACTTTGATAGCGATCAGGATATTGATAAATTCCCAGACTTGGTACTCAATGCTGACAGTACTGTAGGAGACGGGACTGATATGGACGAAGAATATGCCACATTGATCCCTATATCTGTAAAAGAAGCTAAGGCAGCAATGGAGGTGTACAAAATGTTCTCTCAGGGTAAATACCATTGTGAGATATGCAATAAGGGTTATAAAAATGAAGAACGCTTGAAAGTACATTTACGCATGCATGATAAGCATGTGAGTGGTAACTACCACTGTGGACTCTGCCAGTCCTACTATAAAACTGAGTTTTTATTAAAGACTCACATGACTGATAAACACTTGTTTAAGTATTTGTGTAGGAAATGTCCCGAAGTCAGTTTTGATCGATCATCGGCAAAGCAACACTACATCTGGAGTCACTTACAAAACTGTAGCAAAAAGAATCTAAACTGGTATGAGTCTAGACCAAAATGGCTGCAAACACGAGGAGGCAAGCGGGTCAAAGGTGTGGTCACAATAAAACCTGTTAAGAAGAACAGAAAATTGCCTGATGACTTCCTAATCTACTCTCCCATTGGTCATGAAGAACAGTACCGGTTGGTGCAAGAGAGGCAGCACTCGCGGAACTATCAGGAAGCGCTGTATCAGTGTGATCTGTGCTTTAGAGGATTTAGGGGTATGCTGACATATAACAAGCATATGAAGAAACATGATCCTGCACAGTCAGGTCCGTTACAGTGTGACATCTGTAAGATCCACTTCAAGGATCAAAGGAAACTCTACAAGCACATGAATATCACTCACTTGTTCAAATACTCCTGCCAGTtatgcagttatgtatgctgtaatagAGGTCAAGCGCATATGCATTACAGGTGGCATAAAAACGTAACATACGAGTGTCCGCACTGCAAGAGGGAATTCATGAAGGCGTCAACGCGTCTCACTCACATAAGAATAAAGCACCCGTCCATGTGTTTGTGCACTATTTGCGGCCACAGTTTTGTGAGCGATTCGGGGCTATATTGTCACAAACAAATTGCGCACACTGAAGAGGAGATAGAACAAAGCAATAAAATGGTGTTGAACACTGCTGACCCTCACTACTGTACAGACTGCGAGATCCAGTTCATGTCGCTCGCAGCGTTCACCACGCATCTAGGCAGCTCCTACAAACATGCCACCACTAATCTGTCAATCAAGCCGTCCCGCCGCAACAAGTCCGAGGCGCCGCGAGCTCGCGGGCGGCCCCGGCGCGGCGCGTGCTCCGAGATCGTCAACAACGGACTCACCACCTCCAGCTCTTGTGAAGTGTGCGGCAAGTTCCTGTCGAACGACGTGCAGGCTCGCAAGCACTACGAGTCGGAACATCCCGACACCGAGTACCTCAAGCGGTACATGTGCGACGTCTGCGGACATACCACCAGGCAATACGCGAACCTCATCGTTCATATGCGGACGCACACAAATGAAAAGCCGTACGGTTGTCCGCACTGCGACCGCCGATTCAACATGCCCAGCAACAGAGACAGACATCTTGTCGTCCATACCGGTGAGAAGCGGTATCAGTGCCAGCACTGCAACCGTCGCTTCACACAGAGCAGCGCCGTCAAACTTCACATACAGACTGTTCATCTCAAGATACCCTACGCGCCGTGGAATAAGAAGAATCGGAAACGGCGCAAGGAGTTAGAAACAGCCGGTATGTCGACCCCGCTGACATTACCGCCGCCCAACAAGCTCACCGCGTACGATGCGCCCGGAGACTATCTCAACGCTTACATCACCTATAATGACGACTAA
- Protein Sequence
- MYNLQACMVCFSTNVKLFSMSSGKLRHDFHLISGIKTCPGDGMPDYLCFQCSSIVKNFKRFRDKCHRAHYALKEILSKNDEINKTTLQDVNRKLLDIMPPLSFMSVDKSHYEKVVFHWKRQNRIDLSISSQHNIAVLHCSTLTPDFTFDGVNDPSNLEFTEDKIKRDIDETEHEEIPVEYEVAKDESGGFVCGTTEDAKIADSFLDNENFDSDQDIDKFPDLVLNADSTVGDGTDMDEEYATLIPISVKEAKAAMEVYKMFSQGKYHCEICNKGYKNEERLKVHLRMHDKHVSGNYHCGLCQSYYKTEFLLKTHMTDKHLFKYLCRKCPEVSFDRSSAKQHYIWSHLQNCSKKNLNWYESRPKWLQTRGGKRVKGVVTIKPVKKNRKLPDDFLIYSPIGHEEQYRLVQERQHSRNYQEALYQCDLCFRGFRGMLTYNKHMKKHDPAQSGPLQCDICKIHFKDQRKLYKHMNITHLFKYSCQLCSYVCCNRGQAHMHYRWHKNVTYECPHCKREFMKASTRLTHIRIKHPSMCLCTICGHSFVSDSGLYCHKQIAHTEEEIEQSNKMVLNTADPHYCTDCEIQFMSLAAFTTHLGSSYKHATTNLSIKPSRRNKSEAPRARGRPRRGACSEIVNNGLTTSSSCEVCGKFLSNDVQARKHYESEHPDTEYLKRYMCDVCGHTTRQYANLIVHMRTHTNEKPYGCPHCDRRFNMPSNRDRHLVVHTGEKRYQCQHCNRRFTQSSAVKLHIQTVHLKIPYAPWNKKNRKRRKELETAGMSTPLTLPPPNKLTAYDAPGDYLNAYITYNDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00301697;
- 90% Identity
- iTF_00273935;
- 80% Identity
- -