Ckad017091.1
Basic Information
- Insect
- Caradrina kadenii
- Gene Symbol
- -
- Assembly
- GCA_947462355.1
- Location
- OX381702.1:2848873-2858396[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2.4 1.4e+02 3.3 0.7 1 23 144 167 144 167 0.86 2 11 0.008 0.46 11.1 3.0 1 23 174 196 174 196 0.98 3 11 0.6 35 5.2 0.8 2 23 201 223 200 223 0.84 4 11 0.0006 0.034 14.6 1.6 1 23 234 256 234 256 0.98 5 11 2.2e-05 0.0013 19.2 0.2 2 23 261 283 261 283 0.97 6 11 1e-05 0.00059 20.2 1.8 1 23 290 313 290 313 0.98 7 11 1.4 79 4.1 3.1 5 22 324 341 321 345 0.89 8 11 4.5e-06 0.00026 21.3 0.0 1 23 353 376 353 376 0.95 9 11 5.4e-05 0.0031 17.9 2.3 1 23 382 405 382 405 0.94 10 11 6.3e-06 0.00037 20.8 0.4 3 23 416 436 415 436 0.98 11 11 0.053 3 8.5 3.9 2 23 443 465 442 465 0.92
Sequence Information
- Coding Sequence
- ATGAAAAACATATACATCTGCATCTTCTGCCACAACATGCTAAAGAAGATAGAAGTATTCAAGCAACAGGTAGAAGAGAGTGCAGCCTTGCTACTGAATCAGGTTCCAGTCTTAAAAATAAACCAACTATACAACTTACAACGCTCGCCTATTCAAATTGACGGCGCCACCACCACTGAAGTAAAGGCCGAACCGACTGATTCCCATTGGCTGGACTTTGAACTTGAAACAGAAGTCAAAGTAGAATACGACTTCTTTGACAACAACACGGAACCGGACCGCACTGTACCGGAAGTAAAAATGAAGAGAAAGAGAACGAAAAAAGAAATAAGATATAAAGGGAAGATTCGGATCGTGATGTTGACAGAACAGGAGTTGAAAGAGGAAAGGGAACGAATGGCTAGCCACAAAGGATACTTGAAACTGCCCTACAAATGTGAGGATTGTATCGTAGGCTTTGATCACGAGCTTACATTACTCAGCCATAATGAGAAGAGGCATAGAAAGATGAAAAATGGTTTCAAATGTAATGTCTGCAAGTCAGTGTTAAGCACTAAGTTTTCATACAATGAACACACCAAGAGACATGTCCGACGTATGGAGTGTATGGTGTGCCACAAGAGATACAATCGTATGCAGTCAGCTGTGCAGCATTATGATGAGCAGCATGCTCCTACCGGCGCCGCCTTACAGCAAGGATACTCTTGCAAGGATTGTGGCTTCACCACTGCTTCCAACCGCTCATACCGCTATCATATAGACAAACACAAGAAGAAAGAAACTTGTAAGATTTGCGGGAATGTGTTCGTGAACAGAAACGGACTTAAGGTTCATATGTACACAGTACACAAACAATCCTCTCGGGTCTACAAATGCGAACAGTGTAACAAGTTGTACCGCTCTCGCTCCGGCCTGGAGTCCCACCAGCGGTCCACCCACGCCACCACTGACACCCGCGCCTTCTGCATCGAGTGCAAGACGCATTACAGAACCAAGCAGGGCTTGGCTCATCATTTGAGCACAAATTCGAAGCATGTCAGCGAGAGTGATAAGAGGTTCATTTGCGATGAATGCGGAGCAAAATTTGTTACGAAGTGGAATTTACAAGTACATATAAATTGGGAACATTTCAAGATTAATACACATCGATGTAGTGAGTGTACCAAGATCTTCAAAAGTCGTAACGCGCTCAATCGTCACGTGTCCTACGTACACAACAAGAAGAGGCCTCCGCGCAATAAGATCTGTGATTACTGTGGACGAGCCTTCACAACACAAACGATTTTGCAGTCTCACATCCGGACACATACGGGAGAGCGTCCGCTTCACTGTACTCACTGTAGTGCTACCTTCGCGCATTCAGCAGCTCTTTACACCCACAATAAACTGCTGCATACtcccaaataa
- Protein Sequence
- MKNIYICIFCHNMLKKIEVFKQQVEESAALLLNQVPVLKINQLYNLQRSPIQIDGATTTEVKAEPTDSHWLDFELETEVKVEYDFFDNNTEPDRTVPEVKMKRKRTKKEIRYKGKIRIVMLTEQELKEERERMASHKGYLKLPYKCEDCIVGFDHELTLLSHNEKRHRKMKNGFKCNVCKSVLSTKFSYNEHTKRHVRRMECMVCHKRYNRMQSAVQHYDEQHAPTGAALQQGYSCKDCGFTTASNRSYRYHIDKHKKKETCKICGNVFVNRNGLKVHMYTVHKQSSRVYKCEQCNKLYRSRSGLESHQRSTHATTDTRAFCIECKTHYRTKQGLAHHLSTNSKHVSESDKRFICDECGAKFVTKWNLQVHINWEHFKINTHRCSECTKIFKSRNALNRHVSYVHNKKRPPRNKICDYCGRAFTTQTILQSHIRTHTGERPLHCTHCSATFAHSAALYTHNKLLHTPK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01118631;
- 90% Identity
- -
- 80% Identity
- -