Ckad011272.1
Basic Information
- Insect
- Caradrina kadenii
- Gene Symbol
- -
- Assembly
- GCA_947462355.1
- Location
- OX381701.1:4073753-4082635[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.075 4.3 8.0 1.6 3 23 2 23 1 23 0.94 2 23 0.044 2.6 8.7 0.9 2 23 94 115 93 115 0.96 3 23 1.4e-06 8.2e-05 22.9 1.9 1 23 119 142 119 142 0.96 4 23 0.53 30 5.4 0.6 3 20 149 166 148 168 0.89 5 23 1.4 78 4.1 3.0 2 23 228 249 227 250 0.93 6 23 0.18 10 6.8 0.1 2 23 277 299 276 299 0.94 7 23 0.5 29 5.4 7.1 1 23 324 346 324 346 0.97 8 23 0.66 38 5.1 1.0 1 21 350 370 350 373 0.93 9 23 1.2 67 4.3 0.3 3 22 380 399 378 399 0.93 10 23 4.1 2.4e+02 2.6 0.6 3 23 407 429 406 429 0.84 11 23 4.1e-05 0.0024 18.3 1.1 1 23 436 459 436 459 0.96 12 23 0.78 45 4.8 0.8 1 23 464 486 464 486 0.91 13 23 0.00016 0.009 16.5 2.0 3 23 546 567 545 567 0.98 14 23 3.2 1.9e+02 2.9 0.0 2 23 592 614 591 614 0.92 15 23 0.00034 0.02 15.4 0.2 2 23 638 659 637 659 0.96 16 23 0.00038 0.022 15.3 0.8 1 21 663 683 663 684 0.96 17 23 0.4 23 5.8 0.1 1 23 725 748 725 748 0.96 18 23 1.4 80 4.0 0.2 2 23 774 796 773 796 0.94 19 23 0.0026 0.15 12.6 0.9 2 23 820 841 819 841 0.95 20 23 0.00028 0.016 15.7 0.0 1 23 845 868 845 868 0.97 21 23 0.52 30 5.4 0.6 1 23 872 895 872 895 0.97 22 23 0.00043 0.025 15.1 1.9 1 23 934 957 934 957 0.96 23 23 0.00025 0.014 15.8 0.4 1 23 967 990 967 990 0.95
Sequence Information
- Coding Sequence
- ATGTGCGTATATTGCTGCGAATCTTACACCGACCCCAAATTGTTTCGACAACACATGAAAGAGGAACACGCCTTGTTTAAAGTCCGTAATGCCTTCGCTCACTGCTCCTATGAGAGCTACCTCAAAGTCGATTGCACAGAGATGTCCTGCCGTAGGTGCTTAGAAACTTTCGAAAAGATCGAAGAAGTCGCCAGCCATTTAAACGAAAAACACTTGGCCAAAATCGACTTTGACTTCCATCTTGGACTGCATCCCTACAGATTTCCGGAAGACAGAATTATGTGTGGGAATTGTGGTATAAATTTTCCCTGCCTGAGACAGTTAAGCCGACATATGTCTTCCCACTATCAGAACTTTACGTGCGATACGTGTGGCAAGTCTTACACGACGAACACGTCCTTGCAACAGCATATTCGCTTCTCGCATATAGCTGGCGAGAGGATTTGTAGAAAATGCAAACAAACCTTCAGTTCTTTAAAAGCTAAAAGAGAACATACGTTGTTATATCTTCAATTTTCGGCCGAGAGCCGAGCGTTCAAAATCCAACAGTGTGCAAGGCAAAGTACAAATGATACTGTTTTAAACGAGATAGTTGAACCACATTTATGGGCGAAAGGGAATGCTGAGATTGTGTTGCAATATGCGACCATGTACCCATTCAGATTGCGAGGGAAAGCTATCACTTGCGTCTACTGCTGCGAGGGTTATGAGGACCCCACGCATTTCAGGCGACATGTCGACGTGCACCACCAGGAGTACAACATTGCCACGGCTTTCCACCACCTGACCAGCGTAAAAGAGTACCTCAAAGTTGATATTTTCGACTTAAAATGCAGACTATGCTCTACGCCTTTCGAAAACGTCGATGATGTGGCTCAACACTTGAAAGAAACACACGCAGAATTAACAAAGAAGCTGAATCTAGAATATGATGTAGGCATGCAGCCATACAAATTAATAAATGACAATTACTGCTGTTTCCATTGCGGCAAAAAAATGCCGACCCTCGTAAAACTGTGTCGTCACACCATCATGCATTACCAGCGATTTATATGCGTCACTTGCGGTAGGAACTACCTGACCCAGGATGCCTTAAATTACCATGTCAAATGCATACATTCAGAGAGGACTCACCTATGTCGAAGGTGCTGGACAGAATTCCCCACACTGGAGGAAAGAAAGGCGCACGTTAGAACAACAAAGGCATGCTGGACTTTCTGCTGTATAATCTGCGCTGAGAGATTCCAATCCTGGGAACTTAAGCAGAAGCATCTAGAAGCAGTACATGGTTACGAAAAGATAGTGTATAATTGTCCTGATTGTAAGGAGGTGTTCACTTCGAGAAAGAATTTTTATATACATTACAAATTGGCTCACACTGATGAAGGGTTTCAGTGCGCTTGTTGTGGACTCAAATTCAACACTAAAGCAAGACTAGATGATCACGCTCTTGGACATggagagagagagttcaagtgcaGGACCACATTGGAAATTCATGGACGTAGTGAGACTGAGAATGAAACAAAAAAGAAAATTGTACTTGTTTACCAGACGCCGCAAAGGCGTAACGCCGAACTTATACTTACTTGCTCAACCGCCTATCCGTTTAAAACTCGCTTTAGCCAAATACTCTGCTCTTACTGCCACGAAGAGTTTAACACCCTAACTGATCTCAGATACCACATGAAGACAGAGCACATAAATTCTGGTTTCAAAAACGTTTTCTATAGGGCAAGAGATAATTTAATCAAAATAGATATTACTAATTTAGAATGTAAAATCTGCGCTGAGGGGATCCAAGATGTTGATAGTTTAATGAATCATTTGTATAGGGAGCATAATAAACCGGTCAAATTCAACGCTCGCTATGGAGTTTTACCTTACAGACAAAATTCTGATAACCATTGGACTTGTGTGTATTGTAACAAGGTTTTCATTTCATTCATAGCGTTCAATCGTCACATCGTTACGCATTTCATGAATTATAGTTGCGACAAGTGTGGAACGACTTTCGTGTCCGACTACGCTTTGAAAGACCACCATCGGCAAGTGAAGTGCTTCCGAACAGCTTATAAGGCTCGAAATGGAAGAGTTTTGAAGCCTAGATCTAATGCAGAAATTATTCTACAATGTTCCACTGCTAGTCCCTTCAGAACTTGGAAGAGTAATTTCAATTGTGTGTTCTGTAGGGTCCAAAGTAATGACCCCAGCGGTCTTCGTATGCATGTCATCACAATTCACGCCAATTACGATGTCAAAGCCGCGTTTTATAAGAAATTAGGAAAAGAATTCCTCAATGTTGATATTACCGATCTTCAGTGTAAGCTGTGCTTCATGCCTATAGACTCCTTTGACAGTTTGATTTATCATCTTAAGAACGACCATCAACAACCTCTGAATACTGACGCGCAAATCGGCGTTCTGCCTTTTAGACTAAACGATGGCTCGATATGGAAATGCACAATATGTCCGAACCAGTTCAAAGATTTTGTTTCTTTAAAAAAACATACGTCGGAACACTTTCAAAATTACGTTTGTGACACATGCGGTGAGGGTTTTATTACTGAATCAGCCATGATAGCCCATACAAAGATACCACACGAAAATAAGTACAGCTGCAGTCGATGTATCGCCACATTCTCATCGCTAGACGAAAGGAATTTACATGTGAAAACACAACACACATCATTGCCATACGTCTGCGTGTACTGTAAAGATAAGCCACGCTTCGCAAATTGGGAGGTCCGAAAAAAACATTTGATGGCAGTCCATAATTATAAAACAGGAGCTGACAAATACGATTGCACGACCTGCCAGAAGTCTTTTAAGACGAGATCGGGGAAGTACAACCACATGGCGAGAGTGCATCGGATAAAAAAAGATACTGAACTTAGTTACCCATGTCCAAACTGCCCCAAAGCGTTTACGACCAAACTGTTCTTGGATAAGCACGTCGCTAAAAAGCACTTTGATGTTTGA
- Protein Sequence
- MCVYCCESYTDPKLFRQHMKEEHALFKVRNAFAHCSYESYLKVDCTEMSCRRCLETFEKIEEVASHLNEKHLAKIDFDFHLGLHPYRFPEDRIMCGNCGINFPCLRQLSRHMSSHYQNFTCDTCGKSYTTNTSLQQHIRFSHIAGERICRKCKQTFSSLKAKREHTLLYLQFSAESRAFKIQQCARQSTNDTVLNEIVEPHLWAKGNAEIVLQYATMYPFRLRGKAITCVYCCEGYEDPTHFRRHVDVHHQEYNIATAFHHLTSVKEYLKVDIFDLKCRLCSTPFENVDDVAQHLKETHAELTKKLNLEYDVGMQPYKLINDNYCCFHCGKKMPTLVKLCRHTIMHYQRFICVTCGRNYLTQDALNYHVKCIHSERTHLCRRCWTEFPTLEERKAHVRTTKACWTFCCIICAERFQSWELKQKHLEAVHGYEKIVYNCPDCKEVFTSRKNFYIHYKLAHTDEGFQCACCGLKFNTKARLDDHALGHGEREFKCRTTLEIHGRSETENETKKKIVLVYQTPQRRNAELILTCSTAYPFKTRFSQILCSYCHEEFNTLTDLRYHMKTEHINSGFKNVFYRARDNLIKIDITNLECKICAEGIQDVDSLMNHLYREHNKPVKFNARYGVLPYRQNSDNHWTCVYCNKVFISFIAFNRHIVTHFMNYSCDKCGTTFVSDYALKDHHRQVKCFRTAYKARNGRVLKPRSNAEIILQCSTASPFRTWKSNFNCVFCRVQSNDPSGLRMHVITIHANYDVKAAFYKKLGKEFLNVDITDLQCKLCFMPIDSFDSLIYHLKNDHQQPLNTDAQIGVLPFRLNDGSIWKCTICPNQFKDFVSLKKHTSEHFQNYVCDTCGEGFITESAMIAHTKIPHENKYSCSRCIATFSSLDERNLHVKTQHTSLPYVCVYCKDKPRFANWEVRKKHLMAVHNYKTGADKYDCTTCQKSFKTRSGKYNHMARVHRIKKDTELSYPCPNCPKAFTTKLFLDKHVAKKHFDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -