Basic Information

Insect: Caradrina kadenii
Gene Symbol: -
Assembly: GCA_947462355.1
Location: OX381687.1:12411622-12413998[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 3.3e-06 0.00019 21.7 1.7 1 23 240 262 240 262 0.98

2 9 3.1e-08 1.8e-06 28.1 1.6 3 23 270 290 268 290 0.98

3 9 0.00011 0.0062 17.0 0.3 1 23 296 318 296 318 0.98

4 9 1.1e-05 0.00066 20.0 1.7 1 23 324 346 324 346 0.99

5 9 2.4e-05 0.0014 19.0 1.7 2 23 526 547 525 547 0.96

6 9 3e-09 1.8e-07 31.3 1.6 1 23 553 575 553 575 0.98

7 9 0.0026 0.15 12.6 0.6 3 23 583 603 581 603 0.97

8 9 6.6e-05 0.0038 17.6 1.5 1 23 609 631 609 631 0.99

9 9 0.02 1.2 9.8 0.8 1 23 637 661 637 661 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	3.3e-06	0.00019	21.7	1.7	1	23	240	262	240	262	0.98
2	9	3.1e-08	1.8e-06	28.1	1.6	3	23	270	290	268	290	0.98
3	9	0.00011	0.0062	17.0	0.3	1	23	296	318	296	318	0.98
4	9	1.1e-05	0.00066	20.0	1.7	1	23	324	346	324	346	0.99
5	9	2.4e-05	0.0014	19.0	1.7	2	23	526	547	525	547	0.96
6	9	3e-09	1.8e-07	31.3	1.6	1	23	553	575	553	575	0.98
7	9	0.0026	0.15	12.6	0.6	3	23	583	603	581	603	0.97
8	9	6.6e-05	0.0038	17.6	1.5	1	23	609	631	609	631	0.99
9	9	0.02	1.2	9.8	0.8	1	23	637	661	637	661	0.95

Sequence Information

Coding Sequence: ATGTCGCGAGCTCTGCCGTGCACCCAGCCGCACGCCACCGCCCTTTGTGGCGATATGCTCACCATTTATCACACGATACCAACTTACACGACAACACCGTACGTCCTCTACAAAGATGGCGTGGAACGGGCCCCACCAGGCACGCAGTGGGGCGGCGGAGTGCTGGACGGAGGCTACCAGCCTATGCAGCACCAGAGTCCCGGCGGACCCTCACCACAACCTGAGCCCCAGCTCGCTTCGCCGGCCCCGTCGCCCTACCCTCCCGCGCCGCCTCCCCCAGACCCCACCGGGGCCGCAGAGGACGCCGCCCAGCAGCTCGCTCAACAGCAGGCACAGCAACAAGCGCAACAACAACAGCAACAGCAGCAGCAGCAACAACAAACGTCTCCTGAACACATGCAAGTGGAGCAACAGCTCCAAAGCCAATCTCAGCCACAGCCTCCCTCGCAGGACCACCTCGACCGCACCCCGTGCTTCGTCCCGCAGCCGGACCTGCAGCAGCAGTACACGCCGTACTTCAAGGAGGCGCGACCCACGAGCCACATGCTCGGCACCGGCGGCTTCCCATTACACTACCTTAAACAAAACGGTGGTGTGCTGTCCCTTGAGGGTCCTTTAGACCAGTACTCGGCGCCTGACCTTCGTCACTTGCCAGACATAGTACAGCCTGAGCCGCCGAAGCCGCGGAAACACAACCCGAACTCAGAGCTACGCTTGTTCAAAtgcctgacgtgcggcaaagacttcaagcagaagtcgacgttgctgcagcacgagcggatccacacggactcgcggccttacgggtgtccggagtgcggcaagcggttccggcagcagtcgcacctgacgcagcacctgcgcatccacgcgaacgagaagccgtacgcgtgcgtgtactgcccgcggtcgttccggcagcgcgccatcctcaaccagcacctgcgcatccattccggtgagaagccatatacgtgcggcgagtgcggcaaacatttccgccagaaggccatcctgaaccagcacgtccgcacACACCAAGGCGAGCGCTATTCACACATATATACCCCCCGGCCCCCGCGCGCGCCGCCTGCACTGACCGCGCCGGTCACTGCCGCCGGCGCCCGCGCTCCCCGCCGCCCCCGCACCGTCGATTCGGTCTCGCATCCATTGGCCTTCCTATCAAAAATTCTCGGTTCCCTCGTCGCCCGTATAACGCAGGGCGCTCGCGAGACGCGGAACCGACCGCCGGACGCTCCCGTAACCGTTCCCAATGTTTCGCCGCATCTCATTTTCAAGAACGGGACGACGCCGACTCTGTGGCCCCAGGACGTACCGTTTCCAGCCGATGAGAACAAAGAAGAGATCCAGTCGACGTTCGGCGACGCAGACGGGCAGAATGGAGACCAGCGCGGCTCTTGCTTCTCGCCAGGAGACACGGCGCAGTACCCTGCTTACTTCAAAGACACGAAAGGTCTCAATCACTCAGTCTTCAGCTCAGGGCTATCTCTGCAATATTTGAAAGGTGGAAAGCTACCAGACGTACTGGGGGGACGGGCgatgccactgtacgtgcgctgcccaatttgccaaaaggagtttaaacaaaagtcaacgctactacagcacgggtgcattcacatagagtcgcgtccatacccctgtccggagtgcggcaagcgcttccggcagcagtcgcatctcacgcagcacctgcgcatccacaccaatgagaaaccgtacggctgcgtgtactgcccgcgcttcttccgtcagcggaccatcctcaaccagcacttgcgcatccataccggcgagaagccgtacaagtgcacccagtgcggtaaggacttcaggcagaaggcgattctcgaccagcacacaaggacgcaccagggtgaccggcccttctgctgccctatgcccaactgccggcggcggttcgccaccgagccggaggtgaagaagcacatcgacaaccacatgaatccgcacgctgcgaaggCGCGGCGCGCTGACGCCTCCAAGACGCCGCGGCCCCTGCCGCCCGCCACTGCCGTAGTCAAGCCCGAGCTGTACTTCCCGCAGTGCTACGCGCCGCCGTTCCAACAGTTCCCCGGCTCGGGCGAGTTCAAGCCGGTGGTCGGACCGGGCGCCCCTGTGGCCTGCCTGCCGGCCCAGTGA
Protein Sequence: MSRALPCTQPHATALCGDMLTIYHTIPTYTTTPYVLYKDGVERAPPGTQWGGGVLDGGYQPMQHQSPGGPSPQPEPQLASPAPSPYPPAPPPPDPTGAAEDAAQQLAQQQAQQQAQQQQQQQQQQQQTSPEHMQVEQQLQSQSQPQPPSQDHLDRTPCFVPQPDLQQQYTPYFKEARPTSHMLGTGGFPLHYLKQNGGVLSLEGPLDQYSAPDLRHLPDIVQPEPPKPRKHNPNSELRLFKCLTCGKDFKQKSTLLQHERIHTDSRPYGCPECGKRFRQQSHLTQHLRIHANEKPYACVYCPRSFRQRAILNQHLRIHSGEKPYTCGECGKHFRQKAILNQHVRTHQGERYSHIYTPRPPRAPPALTAPVTAAGARAPRRPRTVDSVSHPLAFLSKILGSLVARITQGARETRNRPPDAPVTVPNVSPHLIFKNGTTPTLWPQDVPFPADENKEEIQSTFGDADGQNGDQRGSCFSPGDTAQYPAYFKDTKGLNHSVFSSGLSLQYLKGGKLPDVLGGRAMPLYVRCPICQKEFKQKSTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPYGCVYCPRFFRQRTILNQHLRIHTGEKPYKCTQCGKDFRQKAILDQHTRTHQGDRPFCCPMPNCRRRFATEPEVKKHIDNHMNPHAAKARRADASKTPRPLPPATAVVKPELYFPQCYAPPFQQFPGSGEFKPVVGPGAPVACLPAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00428362;
90% Identity: iTF_00888518;
80% Identity: -