Ckad011242.1
Basic Information
- Insect
- Caradrina kadenii
- Gene Symbol
- -
- Assembly
- GCA_947462355.1
- Location
- OX381701.1:3698007-3702812[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 0.14 7.9 7.2 0.3 1 23 41 63 41 63 0.94 2 31 0.053 3 8.5 0.2 2 21 91 110 90 113 0.88 3 31 0.00015 0.0084 16.6 1.5 2 23 134 156 133 156 0.95 4 31 0.001 0.058 13.9 4.7 1 23 161 183 161 184 0.95 5 31 0.00056 0.032 14.7 2.7 1 23 188 211 188 211 0.94 6 31 0.095 5.5 7.7 0.3 2 23 214 236 213 236 0.93 7 31 0.13 7.3 7.3 2.3 2 20 242 260 241 265 0.91 8 31 0.00051 0.03 14.8 4.2 1 23 309 332 309 332 0.96 9 31 8.6 5e+02 1.5 0.1 2 23 361 383 360 383 0.92 10 31 0.0092 0.53 10.9 0.1 1 23 405 428 405 428 0.95 11 31 3.2e-05 0.0019 18.6 0.3 1 23 433 456 433 456 0.96 12 31 0.0005 0.029 14.9 0.4 1 22 462 483 462 485 0.91 13 31 0.0008 0.046 14.2 1.4 2 23 491 513 490 513 0.97 14 31 0.00073 0.042 14.4 4.2 1 23 517 540 517 540 0.97 15 31 0.054 3.1 8.5 0.5 2 23 547 568 546 568 0.96 16 31 0.037 2.1 9.0 2.3 1 23 574 596 574 596 0.96 17 31 0.0026 0.15 12.6 3.2 1 23 639 661 639 661 0.96 18 31 0.022 1.3 9.7 0.1 3 23 690 711 690 711 0.96 19 31 0.0049 0.28 11.8 1.9 1 23 731 754 731 754 0.96 20 31 0.00011 0.0065 16.9 0.7 1 23 759 782 759 782 0.96 21 31 0.0053 0.31 11.6 1.9 1 23 787 810 787 810 0.96 22 31 0.0008 0.046 14.2 0.5 3 23 814 835 813 835 0.95 23 31 0.032 1.8 9.2 1.3 2 20 843 861 842 863 0.93 24 31 0.0041 0.24 12.0 3.0 1 23 917 940 917 940 0.96 25 31 0.83 48 4.7 0.0 2 23 1013 1036 1012 1036 0.94 26 31 1.7e-05 0.00098 19.5 0.1 3 23 1043 1064 1042 1064 0.94 27 31 0.003 0.17 12.4 2.8 2 23 1069 1091 1068 1091 0.94 28 31 0.028 1.6 9.4 5.0 1 23 1096 1119 1096 1119 0.96 29 31 2.1e-05 0.0012 19.2 5.0 1 23 1123 1146 1123 1146 0.97 30 31 0.00024 0.014 15.9 0.3 2 23 1153 1174 1152 1174 0.96 31 31 3.2e-05 0.0018 18.6 0.5 1 23 1180 1202 1180 1202 0.98
Sequence Information
- Coding Sequence
- ATGAAGATACCAGATTTGGAAACCGAGGTGGCAAAGCACAGTGCTAGTTTTCTAAGGAGGAGAAATCTGCAAATATTACTCAACAATACATCAGTAATACCTTTTAAATGGCGCGGGAAATACTTGTGCTTTTATTGTGGGGATGATTCGGAGACGCCCGAAAGTCTCCGGAAACACACGAAGGCCCACGGACCTTGTAGTGACAGAGACAGAGCTATACGACTAGTCAAATCAGCTGATGTAGACATTAAAATAGATGTTTCTGATATTACATGCGAGATTTGTTCACAAACTTTTACGTTTTTAGACGAAATTATAAACCATTTGGTTTTTAAACACCAGCTGCCTTACGATAATAATGTAGACATTCTTATATCACCGTACAGACTGTTAGATCTTCATTGTCTTCTATGCGATAAGAGCTTCAATTATTTGAGTAAATTAATCTCTCATATGAATAGCGTTCATCCTGACAACTGTTTTGTATGTCCCGAATGTAGGCAGGAGTTTAATAAGAAGAGAGACTTGCATTCTCACATCAGATTCCATCATAAAAAATACCATTCGTGTACTAAATGCAACGAAACGTTTCCTACAAATTCCGCGTTACATATTCATAGGTCTAACGCTCATTCATCAACTTGCAACATTTGTTTTAAAATATTTCCCTCTGATAGCAAGAGATTAGCACATCTTAAGGCTGAACATGACACTGGGCAGAGCCAGTGCGGGTTCTGCAAGAAATCACTGACAACAAAACAGGCATTTATACGCCATGCTGCAAATTGCACACATAAACCAAAAGAAGAAGCCATTTTAATCGACGATGAAAACAAAAAGGTTTCCATAAAAGAAACAAGAAAAAGTCTAGCATGTATATTTAATATGACGACTGCTTTACCCTTTAAATTCTTCATGAATAGGTTTCGCTGTTTCTATTGCACGAAAGACTTCACCACATGCGAGAATTTGAAAGAGCACACGTCTATTGAGCACCCTTACTGCGATATAACCTTCAAATCTATGAGGTTAAAGAACAGATACGATGGTATCCAAATCAAAATTGACACTTCTTCTTTGTCTTGCAAAGTTTGCCTCGTCACCTTGGAAGGTTTGAAAGATCTGATTGAACATTTGACCAAGGAGCATAAAGTACAATTTGACGTTTCTGCAGAGAGCAATTTACAGCCGTTCAAGCTTATCAAAGATAGCTACCCTTGTCCTATGTGTGGGGTAGTGTACAGATACTTTGGAGTCTTACTGAAACACGTTAGCTCCTTACATAGTGAAAATAAATATATCTGCATGTATTGCGGAAAAGCATTCAGGACTGACCCCAATCTTAGAGCCCACGTGTCCAGGCGTCATAAAATCTCTGAAAATTTCAAGTGCAACACTTGTGAACTACAATTCGGTACTAAAAGCGCTTTAAGAAATCATCAAGGTGCAGTCCACGGTACCAAACTGGTTCAATGCTTTAAGTGTTCTGAGAAATTTGCGTCTAAATACACGATGCAACGGCATTTGATCACGTCTCACGGCACTGGCCATAAGTGCACTTACTGCGGTAAATTGTTCACTAAGAACTCCTTCATGGTGAACCATGTTAGAAGGTCGCATTTGAAAGAAAAAAATGTAGAATGTTCTGTGTGTTTGGAGAAGTTTTTTGACAGTCAAAGGCTTAAAATGCATATGGTAAAACACGTGGGAGAGAGGAACTTCCATTGTGATATTTGTGGGAAGAAGTTTTTGTGGAAAAGGAATCTTAGGGGACATATGACGTCACATATTCGGAACGCGAACTTACATGGTCTTCCAGGCCCGTACGAAGGCTGTACGTCTGAGCGACGAAGGAAAAATCTGAAAATACTTTTCAACCACACCACAATAATGCCATTCAAATGGCGAGGCAAATATCTCTGCTTCTATTGTGGAAAAAACTACACAGAATACACAGAATTTAGAAAACACACAAAGTCTCACGGACTATGCACAACTAAAGATTACTCCTTAAAACTAATAAAAGGAAATAATGTCGAAATAAAAATCGACGTCTCAGAAATAGGTTGCGATATCTGCAATGAACCTTTCAGTAGATTCGACGAAATAATCGATCATTTGATCTCTAAACACAATTTGGAATACAACAAAAATATCGATATACCCTTCCAAGAATATCGGTTGGTCGATTTTCGGTGCCTACACTGCGAGGAGCAATTCTCTTACTTCGGTTATTTGATTAAACATGTGAACAATGTCCATCCACAGAATTGTTTCATTTGCAATGATTGCGGTGGTACTTTCAATAAAAAGAGAGACTTGTCTATACATTTGAGGAATTATCATAGACTGGGAGGATATCCCTGCGATTTGTGCTTGAAAAACTTCGAAACTCACCTCATGTTGCGAAGGCATCAGAATAATATGCACTTTAGACATTGCAAGAGCTGTGGATTGCCTTTTGCGTCCCTATCTCTCTTGCAAAAACATGTTCAGGTTGACCACCCACAAAATGAGAGTAACATGAAGTGTAGTTACTGCTCTAAAGAGTTCCACACTTCATTAGGCTTACGACAACACGTGACGAAATGTAAAGTCAAAATGATCTCTCAGGTCGAACCACAGACTTCATTTTTAAACGACAACAACATTGAACCGAAGAAAAAACAAAATATCCTGCAAATAAGACAAAATATTCAGTGTGTACTCAACATGTCTACTGCTGTGCCCTTCAAATTCTTTTCCAAATACTCTTGCTTCTATTGCTCGAAGAAATTCGTAGAATTCGACGAGTTACGTCATCATACTAGTATCGAGCACCCTGTGTGTGATCTGAAGTCTAAATGCATGAAGAAATGTAAAGGAGAACGGATAGCGGTTAAAATTGACATATCTACTTTAGCTTGTAAAATATGTTGCGTCCCTATGCCTAATTTAGAAGATTTAATCAACCATCTGATAACAGAACATAAAGCGAATTATGACACGTCAATTTCTGGTTGTCTAGAACCCTTTCGTGTCATAAAAGACAATATGCCGTGTCCAATATGTCCGGATACCGTCTTCCGGTACTTCGGAATTTTACTGCGACATATGAACTCCGAACACAGCAACAATAATCGAATTTGCGACTTTTGCGGCCGAAGTTTCCGGAACGCAGCTAATCTCAACGTGCATATAACGTACGCACACACGGGGTCATGCGAATGCGACATTTGTGGTGTCAAGTACAAGAACCAATGGTGTTTAGCTCGACACCGCGCGAGGACACACGATGCGAAAGACCATAAATGTCCAAGGTGTCCGGAACAGTTCCAATCCCAATACCACAAGCAAAAACATTTGATTAAAATGCATAATGTCGGCCATAAGTGTAGTTATTGCGGGAAAATGTTCACAAGAAACTCTTTCATGAAAGACCACGTCAGACGAACACATTTGAAGGAAAAGAATATTCCTTGCTCAATATGCAACGAGAAATTCTTTGATAATTATCTTTTGAGAATGCATATGGTGAAACATGAAGGCGATAGGAAGTTCAGTTGCACGGTCTGTGGAAAAGCGTTTTTAAGACGAAGTAATTTGAGCTCGCATTTGGAGATGCATAAAAAATATGGACACGTACAATTGCAGATTTAA
- Protein Sequence
- MKIPDLETEVAKHSASFLRRRNLQILLNNTSVIPFKWRGKYLCFYCGDDSETPESLRKHTKAHGPCSDRDRAIRLVKSADVDIKIDVSDITCEICSQTFTFLDEIINHLVFKHQLPYDNNVDILISPYRLLDLHCLLCDKSFNYLSKLISHMNSVHPDNCFVCPECRQEFNKKRDLHSHIRFHHKKYHSCTKCNETFPTNSALHIHRSNAHSSTCNICFKIFPSDSKRLAHLKAEHDTGQSQCGFCKKSLTTKQAFIRHAANCTHKPKEEAILIDDENKKVSIKETRKSLACIFNMTTALPFKFFMNRFRCFYCTKDFTTCENLKEHTSIEHPYCDITFKSMRLKNRYDGIQIKIDTSSLSCKVCLVTLEGLKDLIEHLTKEHKVQFDVSAESNLQPFKLIKDSYPCPMCGVVYRYFGVLLKHVSSLHSENKYICMYCGKAFRTDPNLRAHVSRRHKISENFKCNTCELQFGTKSALRNHQGAVHGTKLVQCFKCSEKFASKYTMQRHLITSHGTGHKCTYCGKLFTKNSFMVNHVRRSHLKEKNVECSVCLEKFFDSQRLKMHMVKHVGERNFHCDICGKKFLWKRNLRGHMTSHIRNANLHGLPGPYEGCTSERRRKNLKILFNHTTIMPFKWRGKYLCFYCGKNYTEYTEFRKHTKSHGLCTTKDYSLKLIKGNNVEIKIDVSEIGCDICNEPFSRFDEIIDHLISKHNLEYNKNIDIPFQEYRLVDFRCLHCEEQFSYFGYLIKHVNNVHPQNCFICNDCGGTFNKKRDLSIHLRNYHRLGGYPCDLCLKNFETHLMLRRHQNNMHFRHCKSCGLPFASLSLLQKHVQVDHPQNESNMKCSYCSKEFHTSLGLRQHVTKCKVKMISQVEPQTSFLNDNNIEPKKKQNILQIRQNIQCVLNMSTAVPFKFFSKYSCFYCSKKFVEFDELRHHTSIEHPVCDLKSKCMKKCKGERIAVKIDISTLACKICCVPMPNLEDLINHLITEHKANYDTSISGCLEPFRVIKDNMPCPICPDTVFRYFGILLRHMNSEHSNNNRICDFCGRSFRNAANLNVHITYAHTGSCECDICGVKYKNQWCLARHRARTHDAKDHKCPRCPEQFQSQYHKQKHLIKMHNVGHKCSYCGKMFTRNSFMKDHVRRTHLKEKNIPCSICNEKFFDNYLLRMHMVKHEGDRKFSCTVCGKAFLRRSNLSSHLEMHKKYGHVQLQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01527571;
- 90% Identity
- -
- 80% Identity
- -