Ckad007815.2
Basic Information
- Insect
- Caradrina kadenii
- Gene Symbol
- -
- Assembly
- GCA_947462355.1
- Location
- OX381683.1:12727546-12732852[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.4e-09 9.2e-06 25.3 0.0 2 42 81 122 80 123 0.93 2 2 2.7 3.3e+03 -2.1 0.0 21 29 143 151 141 153 0.81
Sequence Information
- Coding Sequence
- ATGTATAAGAAGGCTTATGGCAGTCAACTGTGGTACTGTTGGTACTTCTTCAGCAGGTGTTGTCCTGCGAAGCTACGGATCAACAATGCTGGGAAGGTGACGGAAAGTATCGGCAGACACAACCACGATCCTCCGACCTGCTGGATGACCCCAGACGGTATATTTAAGACGCATCCAAAAAGTCGCGTCAAACAAAGAAATAGAAGACGTTTGGGAGCGCGAAGTTACAGAAATTACTCTGAAGAGATGCTGTTATTAGCTGTGGACTTAGTTAGAAACAAAACTACAACTTCTTATGAAGCTGAGAAGCAGTTTGGCATACCTCGACGGACCATAGAAAACAGAGTGAAAAACCGGCATACTGACAAACCAGGCGCGCGATTCCGTTTATCTAAAGAAGAAGAAGAAACATTTGTCAAAATACTCAAAGCAGCGGTTGACTTTGGATGTCCACTGTCACAGAAGGATTTTAAACTTGCGGTATATGACTACCTTAAAAAAAATAACAAGACTCACATATTTAATGACCAAGTTCCCGGTAATGGGTGGGTAAAACATTTTTTAGAGCGGCACAAAGAACAACTGACGCTCAGCTCTACACAAAATATTGATCAAACACAGCAGAAATAA
- Protein Sequence
- MYKKAYGSQLWYCWYFFSRCCPAKLRINNAGKVTESIGRHNHDPPTCWMTPDGIFKTHPKSRVKQRNRRRLGARSYRNYSEEMLLLAVDLVRNKTTTSYEAEKQFGIPRRTIENRVKNRHTDKPGARFRLSKEEEETFVKILKAAVDFGCPLSQKDFKLAVYDYLKKNNKTHIFNDQVPGNGWVKHFLERHKEQLTLSSTQNIDQTQQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -