Basic Information

Insect: Caradrina clavipalpis
Gene Symbol: -
Assembly: GCA_932526535.1
Location: OW052117.1:3822682-3842943[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.021 1.4 9.8 0.2 1 23 977 1000 977 1000 0.96

2 13 0.98 63 4.5 0.3 2 23 1008 1029 1007 1029 0.93

3 13 1.2 76 4.3 0.1 3 23 1064 1085 1063 1085 0.94

4 13 0.36 23 5.9 2.5 2 23 1285 1307 1284 1307 0.94

5 13 0.22 14 6.6 0.6 3 20 1316 1333 1315 1335 0.93

6 13 0.36 23 5.9 2.5 2 23 1357 1379 1356 1379 0.94

7 13 0.27 17 6.3 0.6 3 20 1388 1405 1387 1407 0.93

8 13 0.35 22 6.0 2.4 2 23 1429 1451 1428 1451 0.94

9 13 0.27 17 6.3 0.6 3 20 1460 1477 1459 1479 0.93

10 13 0.012 0.74 10.6 0.5 1 23 1491 1514 1491 1514 0.96

11 13 0.00051 0.032 14.9 1.2 1 23 1519 1542 1519 1542 0.96

12 13 0.00015 0.0094 16.6 0.6 2 23 1553 1574 1552 1574 0.97

13 13 3.5e-05 0.0023 18.5 0.8 1 23 1580 1603 1580 1603 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.021	1.4	9.8	0.2	1	23	977	1000	977	1000	0.96
2	13	0.98	63	4.5	0.3	2	23	1008	1029	1007	1029	0.93
3	13	1.2	76	4.3	0.1	3	23	1064	1085	1063	1085	0.94
4	13	0.36	23	5.9	2.5	2	23	1285	1307	1284	1307	0.94
5	13	0.22	14	6.6	0.6	3	20	1316	1333	1315	1335	0.93
6	13	0.36	23	5.9	2.5	2	23	1357	1379	1356	1379	0.94
7	13	0.27	17	6.3	0.6	3	20	1388	1405	1387	1407	0.93
8	13	0.35	22	6.0	2.4	2	23	1429	1451	1428	1451	0.94
9	13	0.27	17	6.3	0.6	3	20	1460	1477	1459	1479	0.93
10	13	0.012	0.74	10.6	0.5	1	23	1491	1514	1491	1514	0.96
11	13	0.00051	0.032	14.9	1.2	1	23	1519	1542	1519	1542	0.96
12	13	0.00015	0.0094	16.6	0.6	2	23	1553	1574	1552	1574	0.97
13	13	3.5e-05	0.0023	18.5	0.8	1	23	1580	1603	1580	1603	0.96

Sequence Information

Coding Sequence: ATGTCTCAACGTTATTATAATTTATCTAAACTGAGTTTTTACTCCAAAAATACATACGACCGAACATACCAACATCATGAAAGTACCAACGGCTTGCATTTATTTGAAGATAAAGACGATCCGGAAACGGAAATCGATGAGGACGACGATGTACTTGTTTCCACAAAGACAATGGCACCAAAAAACGGTAAACATAAAATGTCAGAAGCAACTTTGCCACAGATATGCAAAAATAAAGATACGAGAAGAGAATCTCGCGGCTCCATTGATAAGAAAAAGAAAAAGGACAGTGATATGACTAGAGATGAAAGTTTAGAAGAGGAATTATTAAAAGAAATTAAAGCTATCAGCTCTATTCATACCAAAAAGAGAAAGAACAGTGATATATTTGGCGACGAAAGTTTAAAAAGGAAATTGACTGAAGATGAAAGCACACCTATAGATTCCTTTCATAACAAAAAGAAAAAATATAATGATAAAATTAGCGACAAATATTTCAAAAAGAAATCAATTGCAGATGAACTGATAAAAGATAGCTCAACTGTTAGCTCTATTGATAACAGAAAGAAAAAGAGCGATGATAGAGCTAGAGACGAAAGTTTAAAAAAGAAAGTTACTGATGATGATTCTATAAAAGATAGCTTAACTATTATCTCTATTGATAACAAAAAGAAAAATAACAATGAGACATCTAGCGATAAAAGTTTAAAAAGGAAATTGTCTGTAGACGAATCAATAAAAGATAACATAGCTATTAGACATAATCATAACAAAAAGAAAAAGAGCGATGATAAAGCTAGAGACGAGAGTTTGAAAAATAAAGTGAGTGATGATGAATCTAGTCATAACAAAAAGAAAAAAAGCGATGATAATGCTAGAGACGAGTATTTAAGAAAGAAAGTGAGTGATGATGAATCTGGTCATACCAAAAAGAAACAAAGCGATGATAAACCTAGCGACGAGTATTTAAGAAAGAAAGTGAGTGATGATGAATCGATAAAAGATAGCAGAACTATCGATTCCGTTCATAATAAAAAGAAAAAACACAGTGAGACATCCAGCAATAAAAGCTCAAAAAAGAAATTGACTGAAGAAGCGCCATTTTTTATTAATTCATCGATAAAAATTAGCACACCTATCAGCCCTAGTCGTCACAAAAAGAAAAAAAATAGTGAGACATCTAGCGATGAGATATTAAAAAAGAAAACAATTGAAGATGAAAGCACAGATGGCGGCTCTATTCATTCCAAAAAGAAAAAAAGCGGTGATACAGCTAAAGACGAGTATTTAAGAAAGAAAGTGAGTGATGATGAATCGATAAAAGATTGCATAAGTATCGGCTCTATTTATGCCAAAAAGAAAAGAAGCGGTGATACTAGGGACAAGTATGTAAAAAATAAATCAACTGATGATGAATCCATAAAAGATAGTTTAACTATTAACTCTATAGACAACAAAAAGAAAAGAAGCGGTGATACTAGGGACAAGTATGTAAAAAATAAATCAACTGATGATGAATCCATAAAAGATAGTTTAACTATTAGCTCTATTGATAACAAAAAGAAAAGAAGCGGTGATACTAGGGACAAGTATGTAAAAAATAAATCAACTGATGATGAATCCATAAAAGATAGTTTAACTATTAGCTCTTTTGATAACAAAAAGAAAAAATCCGGAGATACCACTAAAGACGAGTATTTAAGAAATAAAGTGAGTGATGATGAATCGATAAAAGATTGCATAAGTATCGGCTCTATTTATGCCAAAAAGAAAAGAAGCGGTGATACAATCAGGGACAAGTATTTAAAAAATAAATCAACTGATGATGAATCCATAAAAGATAGTTTAACTATTAGCTCTCTTGATAACAAAAAGAAAAGAAGCGGTGATACTAGGGACAAGTATGTAAAAAATAAAGCAACTGATGATGAATCCATAAAAGATAGTTTAACTATTAGCTCTATTGATAACAAAAAGAAAAAAGCCGGTGATAAAACTAGCCACGACAGCTTAAAAAAGAAAATAACTCAAGATGAAAGCACAGATTTCGAGTCTCTTTATAACAAAAAAAGCGGTGATACAACTAAAGACGAGTGTTTAAAAAATAAAATGACTGATGATGAAAGCGAAGCTCTCGTCTCTATCTATAAGAAAAAAAAGAAAGCCATTGATAAAACTAGGGACGAAAGTTCAAAAAAGAATATAATTCAAGATGAAAGTACAGATGTCGACTTTAATCATGCCAAAAAGAAAAGAAACAGTGAGACTTCTAGCCATAAAAGTTTAAAAAAGAATTTGTTTGGAGACGAATCAATAAAAGATATTATAGCTATCAGTCCTATATATAATAAAAAGAAAAGAAATAGTGAAACATCTTGCGATGAGAGCTTAAAAAGGAAAATTGAAAATGAAAGCGAAGCTATCAGCTACTTTCTTAACAAAAAGAAGAAAAACAGTCATACAAGGGACGAGCGTTTAAAAAATATATTCACTGATGATGAATCTATAAATGATAGCTCAACTATTAGCTCTATTGATAACAAAAAGAAAAAACACAGCGAGACACAAACATCTGAAGATGAACCGATAATCGTTACCACAGCTAAAGACACAAATGGTGCCAGAAATGGCAAACATTTACTAAATGGGGCTGACAAAGAAAAACACAAACATGAAAAGAAAAGCTCAAAAGATTCCCAAAGTAAACGTAAAAAAAGGAAAATTGAGAAGGAACCATTTAATGAACTTGAGTGCATTATGAAAATTGCTAGACGGGAAAACGAAAGGGCCGGAAACAAGGCCCCATTACCAATAGAACCGGAAGTACCACTGCCATTAGTCAAATTCACTATTGTGAATTTGAATGAAGAACAAATTTTGGAAACTAGGGAATTGGATAGGGAAGCAGAGGTTTATAAGAATCGAGCTTTTAAGTGCGAAGATTGCATCGTTGGGTTTGCTGAAAAGAAACAATTAGCAAAACATATTAAAGAAAAGCATAGCCAATCAGCCGGCAAACTTAAATGTCCTGTTTGCAAAGTCCGATTAAATAGAAGAGGATTTTGGAAGCTCCATGTTGATAATCACTATAGGAGTTATAAGTGCCGGCAATGTGATTTCCAGCATCATCGAAGATACCAAATAGATGCTCATGTTGTTAAGGAACATGATTTGAAGCCATCACCTGTATGCTTAGCTTGTGACATTGAGTTTGACTCAACACTGCTTCTTATAAATCATTACCAAACGACGCACATTGAAGTCTTGAAATTTACCCCTGAGGAACAAAGTAATGTTGACACTGAAATATCGGAAATTGAGAAGGACTCAAAACTGCCTGAGAATGTTGAGGAGACAGTGCAGGAAGAGGCACTGGAATGCAGTCCTGAAGAAACTGTTATCATTGAAACCGAAGTCAAAGAAAATGATGAAGGCTCCATCAACGATGACGACATGGTGCAAGAAGAGGCACTGGGACACTGCCCTATAATCATTGATTCTGAACAAACGGACATTGATGACGGCTCAAAAATATTTCTCGCAGATGTTGATGATGCTGTGAATGAGGAGATCGTGGAGACTGACATTATTCAGACCGAGGGAACGGACATTGAGGAAGGGTCAAATAATCATGACGAAATAGTGGATGCAGAGAACTGCGGTCCTGTAGAAACTATTTACATGAATACAGTAGGATCGCAAATTGAGGATGGCTCTACCCTAATTTTTATAAGCGATGATCAGATTGTGCACGGTGATGCACCGGAATGCGAGCCTGCAGAGGTTGTCATTGAAAACGAAATATCGGAGCATGACGCAAGTTCCCAAGCCGAAGAAGATCCAAACATAATGAAATGCGTAGAATGCAACACCACATTCGACGGTAACGCTCACTGCCGCGCGCACATGCAGTTCGCTCACACGCACCTGGCGGAGTTCGCGTACTGTCGCGACTGTGACGTGCAGTTCTCGAGCGTCGATAAGTACCACCGGCATCTGGAGAACAGCGAGAAACATAAGGAGACTGGGGAGACTATCTCCCAAACCGAAGAAGATCCAAACATAATGAAATGCGTAGAATGCAACACCACATTCGACGGTAACGCTCACTGCCGCGCGCACATGCAGTTCGCTCACACGCACCTGGCGGAGTTCGCGTACTGTCGCGACTGTGACGTGCAGTTCTCGAGCGTCGATAAGTACCACCGGCATCTGGATAACAGCGAGAAACATAAGGAGACTGAGGAGACTATTTCCCAAGCCGAAGAAGATCCAAACATTATGAAATGCGTAGAATGCAACACCACATTCGAGGGTAACGCTCACTGCCGCGCGCACATGCAGTTCGCTCACACGCACCTGGCGGAGTTCGCGTACTGTCGCGACTGTGACGTGCAGTTCTCGAGCGTCGATAAGTACCACCGGCATCTGGATAACAGCGAGAAACATAAGGAGACTGAGGAGACTATGTTTGATTGTGGCTTCTGCAATTCAAAATTCGCTACTAAAGATTATCTTCTGGGTCATATAATGCGCTCCCATCGACTGTTGAGTCATACATGTGCGATTTGTAATAAGGGATTTTCTGATGCAAATCGTCTGAAGGATCATATTCAGTACAAACACCCGGATGCGATCAACGCGCCTGACAGTAAAAGGTGTCAAATCTGCAGTGAAAAATTTGTTGTTCGCAGTGACTTACTGCAACATATACGTTCGCACACAGTCGAAAAACCTTTCGCATGCGAAAAATGTGACAAGCGTTTCGCTGTCAAAGCATTGCTTAACAAACATACGAAAAAGGAGCATCTTAAATATGATCGCAAAGACTAA
Protein Sequence: MSQRYYNLSKLSFYSKNTYDRTYQHHESTNGLHLFEDKDDPETEIDEDDDVLVSTKTMAPKNGKHKMSEATLPQICKNKDTRRESRGSIDKKKKKDSDMTRDESLEEELLKEIKAISSIHTKKRKNSDIFGDESLKRKLTEDESTPIDSFHNKKKKYNDKISDKYFKKKSIADELIKDSSTVSSIDNRKKKSDDRARDESLKKKVTDDDSIKDSLTIISIDNKKKNNNETSSDKSLKRKLSVDESIKDNIAIRHNHNKKKKSDDKARDESLKNKVSDDESSHNKKKKSDDNARDEYLRKKVSDDESGHTKKKQSDDKPSDEYLRKKVSDDESIKDSRTIDSVHNKKKKHSETSSNKSSKKKLTEEAPFFINSSIKISTPISPSRHKKKKNSETSSDEILKKKTIEDESTDGGSIHSKKKKSGDTAKDEYLRKKVSDDESIKDCISIGSIYAKKKRSGDTRDKYVKNKSTDDESIKDSLTINSIDNKKKRSGDTRDKYVKNKSTDDESIKDSLTISSIDNKKKRSGDTRDKYVKNKSTDDESIKDSLTISSFDNKKKKSGDTTKDEYLRNKVSDDESIKDCISIGSIYAKKKRSGDTIRDKYLKNKSTDDESIKDSLTISSLDNKKKRSGDTRDKYVKNKATDDESIKDSLTISSIDNKKKKAGDKTSHDSLKKKITQDESTDFESLYNKKSGDTTKDECLKNKMTDDESEALVSIYKKKKKAIDKTRDESSKKNIIQDESTDVDFNHAKKKRNSETSSHKSLKKNLFGDESIKDIIAISPIYNKKKRNSETSCDESLKRKIENESEAISYFLNKKKKNSHTRDERLKNIFTDDESINDSSTISSIDNKKKKHSETQTSEDEPIIVTTAKDTNGARNGKHLLNGADKEKHKHEKKSSKDSQSKRKKRKIEKEPFNELECIMKIARRENERAGNKAPLPIEPEVPLPLVKFTIVNLNEEQILETRELDREAEVYKNRAFKCEDCIVGFAEKKQLAKHIKEKHSQSAGKLKCPVCKVRLNRRGFWKLHVDNHYRSYKCRQCDFQHHRRYQIDAHVVKEHDLKPSPVCLACDIEFDSTLLLINHYQTTHIEVLKFTPEEQSNVDTEISEIEKDSKLPENVEETVQEEALECSPEETVIIETEVKENDEGSINDDDMVQEEALGHCPIIIDSEQTDIDDGSKIFLADVDDAVNEEIVETDIIQTEGTDIEEGSNNHDEIVDAENCGPVETIYMNTVGSQIEDGSTLIFISDDQIVHGDAPECEPAEVVIENEISEHDASSQAEEDPNIMKCVECNTTFDGNAHCRAHMQFAHTHLAEFAYCRDCDVQFSSVDKYHRHLENSEKHKETGETISQTEEDPNIMKCVECNTTFDGNAHCRAHMQFAHTHLAEFAYCRDCDVQFSSVDKYHRHLDNSEKHKETEETISQAEEDPNIMKCVECNTTFEGNAHCRAHMQFAHTHLAEFAYCRDCDVQFSSVDKYHRHLDNSEKHKETEETMFDCGFCNSKFATKDYLLGHIMRSHRLLSHTCAICNKGFSDANRLKDHIQYKHPDAINAPDSKRCQICSEKFVVRSDLLQHIRSHTVEKPFACEKCDKRFAVKALLNKHTKKEHLKYDRKD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -