Ccla017274.1
Basic Information
- Insect
- Caradrina clavipalpis
- Gene Symbol
- -
- Assembly
- GCA_932526535.1
- Location
- OW052112.1:1165360-1194876[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.1 6.7 7.6 1.1 1 23 415 437 415 437 0.97 2 11 1 64 4.5 1.4 1 15 470 484 470 493 0.82 3 11 3.8e-05 0.0024 18.4 0.7 1 23 498 521 498 521 0.92 4 11 0.0011 0.069 13.9 0.7 2 23 528 549 527 549 0.97 5 11 2.8e-05 0.0018 18.9 1.1 2 23 563 584 563 584 0.98 6 11 1.3 86 4.1 2.9 3 23 590 611 588 611 0.95 7 11 9.7e-05 0.0062 17.1 3.1 2 23 622 644 621 644 0.96 8 11 0.035 2.2 9.1 1.2 1 23 651 674 651 674 0.94 9 11 0.0066 0.42 11.4 0.7 5 23 686 705 685 705 0.93 10 11 0.00015 0.0096 16.5 2.6 1 23 714 736 714 736 0.98 11 11 0.002 0.13 13.0 0.5 1 23 741 764 741 764 0.95
Sequence Information
- Coding Sequence
- ATGGAGACGACGTTGTCAATGGTGGAAATAACTGTTAAACCAGAACCAATAGATTGTGATAATGCAGAGGAGAATGAGCAGAATGGGATCAAACAGGAAATTGAAGAAGAGAAAGAAGAATTGTGGATTAAACCAGAGCCCTACGAAGAGGAATCTCAGGATTCCATCAAGGATGAGGACCAGGGAACCCTATCAGAGAATGAAGCCAAGTTGGATGAAGAAGCCTTAAATGATGAAAGCAATAGGAACAGGCAATCTAATGCCCCATCAAGGAAACAGATCCTAGTGTTTCTAGATTTTCTGAATGAACACAGGGATCTTGCTAACTGTATGTTGAGAGGACCGACTGGAAGGGCTAGGGCGCACCAGCTTTGGGAAGACATTGCTGAGAGACTGAATACCATCAGTGGTTGTACGAAAACCACACAGCAATGGCAACGGGTGTGGTCCGACAAAAAGTATTTAACACGCAAAGCTGCGGCCGCCAGGTATGCGTCCTTGTCAGCCGGTGCACCTTTAGCACCAGAACTGACGCTCCAGGATGAGAAGATCCTGGCTATTATTGGAGAACCAGTTCCACCAAGAAGGGTCATCCAGAAGCCGGGTACTCCTGAGCCAAAACCAAACCAACAAACTCCGAAACAGCAAGATGTCTTAGCAGTATCCCTGCCCATACGAGGGCCTGCAAAGCCAGAATCAGAGCCGCAACCAGTAGTGTCCACAGTGGTCCCACAAACGGAACTACCACGGACACCTTTAATACGAAAGCCATATACTCCAAGAAAGACTGAACCTTCACGGAAAACGGAAGTTCCGCAACAGATGGATATTCCATTGCCACCAGTCATTTCGAATGAGCTAAGTCAGCCAGACGTCTCCAAACCATCTGACGACCTTTCTCAGCCTGGCCAGAAAGAGGATGATCCGTCATTAGCACCTTCAATATCAGACTCTTCTTCACTTCCTCGTAAACAACCGGAAACCATAGATCTGAAATCGACATTGCCGCTAAAGAAGAGAATAAAGCAAGAAGATGAAGAGTGCTTCACACAGAAAGAAGAGCCGCAGGAAAAGAATGCTGCTGAAGAAAATGAACAGCCAGAGGTTAAACCTCGACCTAAGATGGAAACCCCCCTGATGTACTCTTACGAAATAACGAAGAACATAGAGATAGTGACCATCAACGAGGAGGAGCGCCTGAAGGAGTACCAGGAGACGCTGAAGGCGCGTCAGCACATGCGCCATGTGTGTGAACACTGCGCGCTTGGGTTCGTCCTGAAACAGGCTTTCGATATGCACATGAAGGTTCATGCTCCTGAATCAGGAACACACGAATGCTTACTCTGCCATTCTCGTCTCAAAACCGCTGACATACTATACCGGCACCGGTTACGGCACTACCGCCGGTACCGGTGCCTGCTCTGCCGGACGCGGTTCAAAGACAAAGACACCGCCGCCTGCCACGTCATGAACGACCACGCGGGTCAGACGTTTGCTTGTGATCGTTGTGGCAGAGGATTCAAAAGACCGCAGTACCTGAAGAGGCACGTGGAACAGTACCACACGAAGCCCCACCACCTGGAGTGTGGCGTCTGCTCCCGGGTCTTCCACGAGAGGGGCTGGTATAGGTCCCACATCAGAACTCATAATGAGGAGGTACGGGCTAAGACGGTGCGGCTGCCAGCCACCTGCGAGATCTGCTCCCGCGACTACAAGAACAAGGCGAGCCTGAAGCGACATCTGCTCACGCATGACGAAGCTGTCCACTGCGAGATCTGTTACTTGAAGTGTAAGAACAGGATCACGCTGGGAAATCACTATTTGAAAGTTCATAATGAAAAATATCTGGGTGCGCCTGAGCAGACGTGCCCGCACTGCGACCGTATCTGCGCGACGCGCGCCATGCTCAAGCGGCACATACAGAGGATGCACAGCGACAGAACTAAGAAATACCAATGCGACCACTGCCAGCGCTTCTACCTGACCAAAGGCGAGGTCCGGGCACACATCACGTGGTCGCACATGCCGGCTGAAGCCCGAGGGGGCCACGCGTGCACCTGTGGGCGCATCTTCCGGAGCCCCTCGTTGCTACGCGACCACAAGGCGAGGTTCCATGCTGCACAGCCACCGCCGAGGGTACACCAGTGTGAGCAGTGTGAGAAGGCTTTTGCGAACAAGCAAGTACTAAACCGCCACAAGAAAAGTCACTCCAACGAGATGTACCCGTGCAAAGAATGCGGGCTGCTCTTCAAAACTCAACCTTACGTCAAGGTACACTACCAACTCAAACATTTGAACATGACTCGAGCAGAGATCAAAGCTCAAAGGAAACTAAACAAAAACACGATGATACAGAACAATATACATAAGAGTACGAATTGGGAACCACCCATTGCGACTAAGAAGAAGAGTTCTGTGTTAGTTGGAGAGGATCCCCTGCTGGTTCAGGAGAGTGATATACAGATCAAAGTGGAGAGGATGGATGATGAGCTGCAGATCCCGACCTTCCAGACTTTTAGTGATATTATTATGGAATAA
- Protein Sequence
- METTLSMVEITVKPEPIDCDNAEENEQNGIKQEIEEEKEELWIKPEPYEEESQDSIKDEDQGTLSENEAKLDEEALNDESNRNRQSNAPSRKQILVFLDFLNEHRDLANCMLRGPTGRARAHQLWEDIAERLNTISGCTKTTQQWQRVWSDKKYLTRKAAAARYASLSAGAPLAPELTLQDEKILAIIGEPVPPRRVIQKPGTPEPKPNQQTPKQQDVLAVSLPIRGPAKPESEPQPVVSTVVPQTELPRTPLIRKPYTPRKTEPSRKTEVPQQMDIPLPPVISNELSQPDVSKPSDDLSQPGQKEDDPSLAPSISDSSSLPRKQPETIDLKSTLPLKKRIKQEDEECFTQKEEPQEKNAAEENEQPEVKPRPKMETPLMYSYEITKNIEIVTINEEERLKEYQETLKARQHMRHVCEHCALGFVLKQAFDMHMKVHAPESGTHECLLCHSRLKTADILYRHRLRHYRRYRCLLCRTRFKDKDTAACHVMNDHAGQTFACDRCGRGFKRPQYLKRHVEQYHTKPHHLECGVCSRVFHERGWYRSHIRTHNEEVRAKTVRLPATCEICSRDYKNKASLKRHLLTHDEAVHCEICYLKCKNRITLGNHYLKVHNEKYLGAPEQTCPHCDRICATRAMLKRHIQRMHSDRTKKYQCDHCQRFYLTKGEVRAHITWSHMPAEARGGHACTCGRIFRSPSLLRDHKARFHAAQPPPRVHQCEQCEKAFANKQVLNRHKKSHSNEMYPCKECGLLFKTQPYVKVHYQLKHLNMTRAEIKAQRKLNKNTMIQNNIHKSTNWEPPIATKKKSSVLVGEDPLLVQESDIQIKVERMDDELQIPTFQTFSDIIME
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -