Ccla019186.1
Basic Information
- Insect
- Caradrina clavipalpis
- Gene Symbol
- -
- Assembly
- GCA_932526535.1
- Location
- OW052117.1:1052641-1086159[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00066 0.042 14.5 2.8 1 23 516 538 516 538 0.99 2 12 0.083 5.3 7.9 1.1 1 23 556 579 556 579 0.91 3 12 0.009 0.57 11.0 0.4 2 23 586 607 585 607 0.95 4 12 0.00033 0.021 15.5 0.1 2 20 615 633 615 634 0.95 5 12 0.00019 0.012 16.2 7.8 1 23 648 670 648 670 0.95 6 12 0.00019 0.012 16.2 7.8 1 23 706 728 706 728 0.95 7 12 0.00019 0.012 16.2 7.8 1 23 764 786 764 786 0.95 8 12 0.00019 0.012 16.2 7.8 1 23 822 844 822 844 0.95 9 12 0.00019 0.012 16.2 7.8 1 23 880 902 880 902 0.95 10 12 0.00019 0.012 16.2 7.8 1 23 938 960 938 960 0.95 11 12 0.0049 0.31 11.8 9.0 1 23 996 1018 996 1018 0.95 12 12 4.2e-05 0.0027 18.3 0.1 1 23 1023 1045 1023 1045 0.98
Sequence Information
- Coding Sequence
- ATGGCGTTATGTGAAAGCCAGTTGGACTCTGCGCTTCCGCAGCTGAAGAGGGAAGAGTCTCCGAGCAGTGAGGGGAGCCAGAAGCAGACTCCCGAGAAGAAGACCAAGATAGAGCATAATGGAGAAATATATGGATTGAACCAAGTGCCTGGAGGTCTACCGCTGACGGTAGACTATCGGTCTCCCGTCTCACACTTCGTGCCGCCCGAGTTGTACGCTGCCAGGCAAAAACAGGAGCCGATCAGTgccgCTGAGACCAGCGACCCACCGACTCCTGTGAAGCGGAAGCGAGGCAGACCCAGGGTGGATAAGACCAGTCCAGAATATCTGGCTAACTTGGCAGCCAGAAAACAGGCCAAGGAGATGGCGGCAATGATGAATAACAGGACCCCAGTAAGTGGGGAAAAACGTAAACGCGGCCGCCCACGCGTGGACAAAACTAGCCCAGAGTATCTGGCTCGTAAAAGGGCTCGCGAGTTAGAAGCGCTAGAGAGAAAAGCTAAAAGGGATTATAAGCGGCGTACTACTGGAGCGAAACCCATCACCAAAACATCATTACAAATGACTTCGCGCGTCAAAAAACGACAGTTGCCAGGCAATAAAAAAAAAATGGTGGTTGCCATGAGGAAGTTACCGCAGAAAATTGGCAACACTGTGCGGAAAGTCGGCGATAGGAAGGTCGTTATGAGGCGCGCTGGCAAGTTTTTAAAAAGAAAAGATTCGGCAGCGTCATCGTCAGCCGGGGAGACCACACCAAGGGCTAAGAGGAAATATACTAAGAGGACGCCAAGCGCCAAGAAGGATGCTACGTCGACGTCGACGGAGCGTGTGAAGGGCAAGCGTGGTCGTCCGCGGAAGGTGGACCAACTAGCAGCCAACAATAAGCTGCAGCAGCAACCGAAAATTCGCGTAAGAAATAATTTGATGCCAGTCAACTCCGAAACTATCACGTTGGATAGTGATGATGAGCCAGATCTGGGATCGCCGAGTCAAGCATCCGACTCGCTGAGTTTGGATGAAAACTTGCGAGCTTTGAGGCATATTCACGAGAAATATGCCAACATTGATAAGGATGATCTATACGACACTCACCTGCTTCCTGTGAACTTCAAGAAGCCTGGAGACCAGCGGAGAGATGATGACGAGGTGCTCTCCATCAGGAGTTCTGAAGGGTGTGCTTCTGTTAAAGAAATGGATACGAGGGTCGAGAAGCTGGAAGATAGTTCCAATTCTGATTCTGATTCCAGTACTTCTGGATCTGGCAGTTCCAGCTCAGCATCCAGCACATCATCCAGCTCCGACTCGTCGAGCTCATCCGACAGTTCCGACACAGAGTCGGAGTCGGGCGACGACAAACCTAAGACTGAAACCCCAACGCCAGCTGTCAACCACACCACCAACGAGGATGATAGGTCGTTCGGCGCGTGGTCCTACAGCGGGCCGGCGTCCGATAGCGACTCCGACCCGGAGCGGTCGGCCGACCCGGTCGCGCCGGGCTCCCACGACGAGATCAGCGAGTCGGACAACGAGTCGGCCGACAAGAGCTTCCAATGTCACATCTGTTCCAAGTGGTACTCTACGAGGGTGACACTCAAAATCCACCGCCGCATTCACCAGAACCGCGGCGGCGGTAACTCGCGGTCGCGCGCGCGTTCTTCCGACCGCTACGAGTGCGACTGTTGCAGTGAAACGTTCAACAGACGCGAGAAGCTATGGGAACACAAAGCGGAAGCACACCGCGGCGCCATGACAGTTCGATGTGAGGTCTGCCGGAAGTGCTTTGAAGACGATGCTGAGCTGGCCGCGCACGACCGTACACACACTGCTGACGAGCGGGCTGGCCGCTGCCCCACATGCGGGCTGACGTTCCCGCGCTTCGAGCAGCTGCGCCGGCACGTGGCGTGCGCGCACGGGCCCCCGCCGGCCGGCGCGCGCCTGCCGCACGCCTGCGCGCAGTGCGGCAAGCGCTTCTCGCACGCGCACTCGCTCACGCGCCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTGTGCAAGGTGAGTGACATGCTACTGACACACACACTACCCCGACACTCTCACCACACTGACACAGGCGCGCGCCTGCCGCACGCCTGCGCGCAGTGCGGCAAGCGCTTCTCGCACGCGCACTCGCTCACGCGCCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTGTGCAAGGTGAGTGACATGCTACTGACACACACACTACCCCGACACTCTCACCACACTGACACAGGCGCGCGCCTGCCGCACGCCTGCGCGCAGTGCGGCAAGCGCTTCTCGCACGCGCACTCGCTCACGCGCCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTGTGCAAGGTGAGTGACATGCTACTGACACACACACTACCCCGACACTCTCACCACACTGACACAGGCGCGCGCCTGCCGCACGCCTGCGCGCAGTGCGGCAAGCGCTTCTCGCACGCGCACTCGCTCACGCGCCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTGTGCAAGGTGAGTGACATGCTACTGACACACACACTACCCCGACACTCTCACCACACTGACACAGGCGCGCGCCTGCCGCACGCCTGCGCGCAGTGCGGCAAGCGCTTCTCGCACGCGCACTCGCTCACGCGCCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTGTGCAAGGTGAGTGACATGCTACTGACACACACACTACCCCGACACTCTCACCACACTGACACAGGCGCGCGCCTGCCGCACGCCTGCGCGCAGTGCGGCAAGCGCTTCTCGCACGCGCACTCGCTCACGCGCCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTGTGCAAGGTGAGTGACATGCTACTGACACACACACTACCCCGACACTCTCACCACACTGACACAGGCGCGCGCCTGCCGCACGCCTGCGCGCAGTGCCGCAAGCGCTTCTCGCACGCGCACTCGCTCACGCGCCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTGTGCAAGGCGTCGTTCGCGCGGGCAGACCAACTAGCACAGCACCTAAACAGCCACCTCGCGAACTACAAGCGTCTGAAGCCGTGA
- Protein Sequence
- MALCESQLDSALPQLKREESPSSEGSQKQTPEKKTKIEHNGEIYGLNQVPGGLPLTVDYRSPVSHFVPPELYAARQKQEPISAAETSDPPTPVKRKRGRPRVDKTSPEYLANLAARKQAKEMAAMMNNRTPVSGEKRKRGRPRVDKTSPEYLARKRARELEALERKAKRDYKRRTTGAKPITKTSLQMTSRVKKRQLPGNKKKMVVAMRKLPQKIGNTVRKVGDRKVVMRRAGKFLKRKDSAASSSAGETTPRAKRKYTKRTPSAKKDATSTSTERVKGKRGRPRKVDQLAANNKLQQQPKIRVRNNLMPVNSETITLDSDDEPDLGSPSQASDSLSLDENLRALRHIHEKYANIDKDDLYDTHLLPVNFKKPGDQRRDDDEVLSIRSSEGCASVKEMDTRVEKLEDSSNSDSDSSTSGSGSSSSASSTSSSSDSSSSSDSSDTESESGDDKPKTETPTPAVNHTTNEDDRSFGAWSYSGPASDSDSDPERSADPVAPGSHDEISESDNESADKSFQCHICSKWYSTRVTLKIHRRIHQNRGGGNSRSRARSSDRYECDCCSETFNRREKLWEHKAEAHRGAMTVRCEVCRKCFEDDAELAAHDRTHTADERAGRCPTCGLTFPRFEQLRRHVACAHGPPPAGARLPHACAQCGKRFSHAHSLTRHMHNHAKQLYRCVVCKVSDMLLTHTLPRHSHHTDTGARLPHACAQCGKRFSHAHSLTRHMHNHAKQLYRCVVCKVSDMLLTHTLPRHSHHTDTGARLPHACAQCGKRFSHAHSLTRHMHNHAKQLYRCVVCKVSDMLLTHTLPRHSHHTDTGARLPHACAQCGKRFSHAHSLTRHMHNHAKQLYRCVVCKVSDMLLTHTLPRHSHHTDTGARLPHACAQCGKRFSHAHSLTRHMHNHAKQLYRCVVCKVSDMLLTHTLPRHSHHTDTGARLPHACAQCGKRFSHAHSLTRHMHNHAKQLYRCVVCKVSDMLLTHTLPRHSHHTDTGARLPHACAQCRKRFSHAHSLTRHMHNHAKQLYRCVVCKASFARADQLAQHLNSHLANYKRLKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -