Ccla018234.1
Basic Information
- Insect
- Caradrina clavipalpis
- Gene Symbol
- -
- Assembly
- GCA_932526535.1
- Location
- OW052114.1:8844498-8851545[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.8 1.8e+02 3.1 3.6 2 23 70 92 69 92 0.90 2 12 0.88 56 4.7 1.0 1 23 98 120 98 121 0.93 3 12 0.33 21 6.0 0.2 2 19 127 144 127 144 0.93 4 12 0.0057 0.36 11.6 0.6 3 23 188 209 188 209 0.96 5 12 0.081 5.2 8.0 0.2 1 23 215 237 215 237 0.93 6 12 0.29 19 6.2 0.1 3 23 245 265 244 265 0.96 7 12 0.11 7.1 7.5 0.2 1 13 269 281 269 290 0.84 8 12 0.00019 0.012 16.2 0.3 2 23 311 332 310 332 0.96 9 12 4.1e-07 2.6e-05 24.6 0.3 1 23 339 362 339 362 0.96 10 12 5.4e-05 0.0034 18.0 0.4 1 23 367 389 367 389 0.96 11 12 3.9e-05 0.0025 18.4 2.3 1 20 395 414 395 417 0.95 12 12 6.8e-06 0.00043 20.8 0.4 1 23 423 445 423 445 0.99
Sequence Information
- Coding Sequence
- ATGTTTGTCGTGCTGTCAGTGTTGTTTCGCACTCATGATAGTTTGGATGAAAGAAAATTTGGCGAGTCAGAAATAGTGCGTAAAAGGGATGACGACACTTCTTCGGAAGAAGAAGCAGAGGTGGACGTTGAGGGGTCTCCTACAGTTGCCCTCCCGGATCTGGTTCCAGAACCAGAAAGACCAGCGAGCTGGCACTCGTACCCAATCAAGTGTGAGCAATGCGGTCATATTTGCACATACATTCTGGACTTGAAGGAGCATTGCATGACTATTCATGGACAATTCCATGGTTTCCGCTGCTCAGATTGTCAGGTCTTACTGATAACGTTCAATGAGTATGTAAACCATGCACGGCTGCATCATCCTGAGTTGAATGAATACTGTCCAGTTTGCAACTTAAAAACCACAGATCCCGATCACATCAACTTGCATCCAGAATCATTCTTGGAGCACACAATGTACGTCCCACCCACTCAACCCGTCAGGGACCTCTCCAGATTCTTTGGGCCCAGGGTACGGGAGAAAGTTGTGGTCAACAGCTGGAAAGAGTACCGCTGGGGCTGTGTGCATTGCAGCCTGGAGTACACCAGCCAAGACCTTCTGAGGGTCCACCTCAAAGAAGTTCATAGCACATGCTTTGGATTTAAATGTATGGAATGCAGCGTTCCCACCAAGAACTATGAAGAGTTTATAAAGCATGTTGTCGGTCATCAGCCTGCGTTAGAAAAAATCTGCGAGTACTGCGACGTTGCAGTGGAAAATCGTACCCAATACGATCTCCACGTTAAACAACATATACTCGAGTTCCAATGCCAAATCTGTGGCGAAAATTTCCATGATAGAGTGGTCTCATGGACACACACGCGAATGTACAAAGCTGTCAAATCCAAGCCAAAAGTGACCAAAAAACGAGCAAAACCGAAAGGATTGATTTGCGAGGTGTGCGGGATCTCGTGCTCCGGTCCCGCCACGCTTCGTCGCCACAAGCTAACCCATGCGAAAAATGGGAAAGCATTTACTTGCAAGATTTGTAATAAGACGTACATCCAACCGAGCTCGTTGAAGGCCCATATTTTGAACGTGCACAAAATGGAGACGTTTGATTGTGACACTTGTAATAAGACGTTTGACACAGCGGCTGAGTTGCATGCTCACGTTGACAGCCATGGCAATGCCATGCCGTTTAAGTGCCCTCTATGCTCGCGACGATTCCGGCAGAATAATCATCTGCAGAACCATTTGCCACTACACTCTGACAAGAGGCTCTACACCTGCCAGGTCTGCGAAAAAGGTTTTAAATACAAATATGCGTTGGCGGCCCACGAACGGTCGCATTTGCCACCGTTCGATCCCCCTCAAGCCTCATTGCCACGTTTGGAGGCCCCTTTGGAGAACCCTTGGGACACCCGTTTCGAGAGTCTTTTGAGAAACCGTTTGGAGAGCCGTTTGGAGAACCGTTTGGAGAACCGTTTGGAGAACCGTTTAGAGAACCGTTTAGAGAACCGTTTCGAGAACACGGCAGAAGTACCGCCACCAGCTCCGGCGAGCAGTGAGGCGCAAGCGCAACTCTATGTGACCGTCACTGACGGTTCAGAGGTGTTGAAGGGGTGGGCAGACATCTTTTTGCAGAACGCAGAAAGACACATCTTCGGTCCAAATTCCGGATAG
- Protein Sequence
- MFVVLSVLFRTHDSLDERKFGESEIVRKRDDDTSSEEEAEVDVEGSPTVALPDLVPEPERPASWHSYPIKCEQCGHICTYILDLKEHCMTIHGQFHGFRCSDCQVLLITFNEYVNHARLHHPELNEYCPVCNLKTTDPDHINLHPESFLEHTMYVPPTQPVRDLSRFFGPRVREKVVVNSWKEYRWGCVHCSLEYTSQDLLRVHLKEVHSTCFGFKCMECSVPTKNYEEFIKHVVGHQPALEKICEYCDVAVENRTQYDLHVKQHILEFQCQICGENFHDRVVSWTHTRMYKAVKSKPKVTKKRAKPKGLICEVCGISCSGPATLRRHKLTHAKNGKAFTCKICNKTYIQPSSLKAHILNVHKMETFDCDTCNKTFDTAAELHAHVDSHGNAMPFKCPLCSRRFRQNNHLQNHLPLHSDKRLYTCQVCEKGFKYKYALAAHERSHLPPFDPPQASLPRLEAPLENPWDTRFESLLRNRLESRLENRLENRLENRLENRLENRFENTAEVPPPAPASSEAQAQLYVTVTDGSEVLKGWADIFLQNAERHIFGPNSG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -